Wall clock time and date at job start Tue Mar 31 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.47210 * 109.47030 * 240.00606 * 2 1 3 5 5 N 2.60808 * 109.47023 * 240.00581 * 2 1 3 6 6 S 1.81399 * 109.47339 * 120.00434 * 2 1 3 7 7 O 1.42103 * 110.54227 * 56.30864 * 6 2 1 8 8 O 1.42092 * 110.54437 * 193.05862 * 6 2 1 9 9 N 1.65601 * 104.44731 * 304.68659 * 6 2 1 10 10 C 1.38857 * 119.99930 * 298.95692 * 9 6 2 11 11 C 1.39557 * 119.84314 * 313.52713 * 10 9 6 12 12 C 1.36340 * 120.16033 * 179.71663 * 11 10 9 13 13 C 1.40886 * 119.83463 * 0.55240 * 12 11 10 14 14 C 1.41139 * 120.15544 * 179.69933 * 13 12 11 15 15 H 1.07997 * 120.00196 * 207.64355 * 14 13 12 16 16 C 1.39873 * 119.99881 * 27.63919 * 14 13 12 17 17 N 1.30898 * 119.99723 * 11.95690 * 16 14 13 18 18 Si 1.86796 * 119.99842 * 191.95109 * 16 14 13 19 19 H 1.48505 * 109.47179 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46723 * 120.00146 * 18 16 14 21 21 H 1.48497 * 109.47571 * 240.00141 * 18 16 14 22 22 C 1.40879 * 119.69026 * 359.71897 * 13 12 11 23 23 C 1.36341 * 119.83560 * 0.02562 * 22 13 12 24 24 H 1.08997 * 109.47234 * 295.36567 * 1 2 3 25 25 H 1.08999 * 109.47469 * 55.37023 * 1 2 3 26 26 H 1.09002 * 109.46989 * 175.36917 * 1 2 3 27 27 H 0.97004 * 119.99968 * 118.96511 * 9 6 2 28 28 H 1.08005 * 119.92418 * 359.97438 * 11 10 9 29 29 H 1.08005 * 120.08302 * 180.27360 * 12 11 10 30 30 H 0.97008 * 119.99360 * 179.97438 * 17 16 14 31 31 H 1.07999 * 120.08346 * 179.97438 * 22 13 12 32 32 H 1.07999 * 119.91786 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1296 6 16 2.1347 -0.8552 1.4810 7 8 1.6050 -2.1722 1.5476 8 8 3.5230 -0.6139 1.6643 9 7 1.4120 -0.0602 2.7412 10 6 1.6589 1.2913 2.9425 11 6 2.9681 1.7724 2.8973 12 6 3.2174 3.0992 3.0883 13 6 2.1504 3.9832 3.3433 14 6 2.4013 5.3569 3.5483 15 1 1.7287 5.9438 4.1561 16 6 3.5211 5.9580 2.9642 17 7 4.2029 5.3197 2.0470 18 14 4.0435 7.6717 3.4931 19 1 3.1141 8.1723 4.5375 20 1 5.4228 7.6215 4.0413 21 1 4.0094 8.5833 2.3214 22 6 0.8319 3.4895 3.3931 23 6 0.5970 2.1611 3.1950 24 1 -0.3633 0.4402 0.9286 25 1 -0.3634 0.5840 -0.8456 26 1 -0.3633 -1.0243 -0.0830 27 1 0.8164 -0.5387 3.3389 28 1 3.7856 1.0928 2.7065 29 1 4.2307 3.4709 3.0487 30 1 4.9793 5.7368 1.6418 31 1 0.0092 4.1614 3.5885 32 1 -0.4132 1.7811 3.2333 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088473476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:18 Heat of formation + Delta-G solvation = -42.814604 kcal Electronic energy + Delta-G solvation = -19373.503148 eV Core-core repulsion = 16232.377519 eV Total energy + Delta-G solvation = -3141.125630 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.80209 -38.44648 -38.24541 -37.22089 -36.52373 -34.62990 -34.18605 -31.33247 -30.46404 -26.54473 -26.01659 -23.00506 -22.64352 -21.03202 -19.43472 -19.17671 -18.71258 -18.18603 -17.57061 -16.97007 -16.34881 -15.75854 -15.61267 -15.22746 -14.73370 -14.52904 -14.48980 -14.12310 -13.96175 -13.81174 -13.46850 -13.34874 -13.27777 -13.08688 -13.02244 -12.78116 -12.72741 -12.36962 -12.25447 -11.96892 -11.64798 -11.46447 -11.07731 -10.62583 -9.40755 -8.92509 -8.57751 -6.25821 -1.11561 0.92518 1.24776 1.29892 1.36223 1.44689 1.52098 1.57182 1.57832 2.18562 2.24605 2.70762 2.77672 3.09255 3.63796 3.76089 3.96386 4.52070 4.64108 4.65077 4.65787 4.71252 5.13734 5.18131 5.21011 5.38630 5.42710 5.78814 5.87655 6.02278 6.09445 6.17269 6.38754 6.47207 6.76650 6.98715 7.09108 8.36953 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026259 B = 0.004953 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.064408 B = 5652.012020 C = 5950.678887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.490 4.490 3 H 0.191 0.809 4 C 0.230 3.770 5 N -0.432 5.432 6 S 2.622 3.378 7 O -0.968 6.968 8 O -0.973 6.973 9 N -1.010 6.010 10 C 0.003 3.997 11 C -0.132 4.132 12 C -0.173 4.173 13 C 0.080 3.920 14 C -0.485 4.485 15 H 0.081 0.919 16 C 0.033 3.967 17 N -0.825 5.825 18 Si 0.978 3.022 19 H -0.255 1.255 20 H -0.271 1.271 21 H -0.269 1.269 22 C -0.220 4.220 23 C -0.072 4.072 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.432 0.568 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.286 0.714 31 H 0.111 0.889 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -4.418 -0.018 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.600 4.600 3 H 0.208 0.792 4 C -0.088 4.088 5 N -0.109 5.109 6 S 2.714 3.286 7 O -0.957 6.957 8 O -0.962 6.962 9 N -0.765 5.765 10 C -0.093 4.093 11 C -0.153 4.153 12 C -0.193 4.193 13 C 0.077 3.923 14 C -0.515 4.515 15 H 0.099 0.901 16 C -0.182 4.182 17 N -0.452 5.452 18 Si 0.800 3.200 19 H -0.179 1.179 20 H -0.196 1.196 21 H -0.194 1.194 22 C -0.240 4.240 23 C -0.094 4.094 24 H 0.131 0.869 25 H 0.120 0.880 26 H 0.108 0.892 27 H 0.272 0.728 28 H 0.138 0.862 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.732 -5.945 -1.668 9.135 hybrid contribution 0.127 1.425 0.250 1.453 sum -6.605 -4.520 -1.417 8.128 Atomic orbital electron populations 1.21813 0.84160 1.06007 1.07797 1.28427 1.10648 1.13952 1.06967 0.79240 1.27869 0.93155 0.93346 0.94478 1.81243 1.09011 1.09982 1.10707 1.05208 0.74490 0.73481 0.75449 1.93555 1.80464 1.35799 1.85925 1.93567 1.33015 1.85598 1.84051 1.52086 1.65142 1.17478 1.41836 1.16738 0.92533 0.82120 1.17930 1.21308 0.95940 0.96430 1.01611 1.20968 0.99216 0.92249 1.06866 1.18086 0.91989 0.93574 0.88650 1.19910 1.08446 0.95131 1.28020 0.90071 1.26707 0.94912 1.03794 0.92796 1.69883 1.15847 1.39924 1.19508 0.85197 0.78757 0.76851 0.79187 1.17883 1.19606 1.19430 1.20927 0.95399 0.95862 1.11827 1.20659 0.97809 0.92068 0.98850 0.86873 0.88049 0.89219 0.72771 0.86247 0.88208 0.90314 0.87120 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.08 71.98 0.65 -1.57 16 2 C -0.49 -11.34 3.18 28.79 0.09 -11.25 16 3 H 0.19 4.19 8.14 -2.39 -0.02 4.17 16 4 C 0.23 6.45 14.65 89.44 1.31 7.76 16 5 N -0.43 -13.91 18.54 20.01 0.37 -13.54 16 6 S 2.62 73.97 4.75 -56.49 -0.27 73.70 16 7 O -0.97 -29.32 18.07 -127.65 -2.31 -31.62 16 8 O -0.97 -35.71 15.15 -127.65 -1.93 -37.64 16 9 N -1.01 -25.87 4.98 -51.07 -0.25 -26.12 16 10 C 0.00 0.11 6.01 38.67 0.23 0.34 16 11 C -0.13 -5.49 9.16 22.15 0.20 -5.29 16 12 C -0.17 -8.28 8.61 22.48 0.19 -8.08 16 13 C 0.08 3.78 5.56 -21.27 -0.12 3.67 16 14 C -0.49 -23.54 9.05 23.38 0.21 -23.33 16 15 H 0.08 3.76 7.87 -2.91 -0.02 3.73 16 16 C 0.03 1.52 5.23 85.23 0.45 1.97 16 17 N -0.83 -40.64 10.82 21.82 0.24 -40.40 16 18 Si 0.98 35.87 29.58 68.60 2.03 37.90 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 22 C -0.22 -8.61 9.74 22.47 0.22 -8.39 16 23 C -0.07 -2.29 9.90 22.15 0.22 -2.07 16 24 H 0.11 1.46 7.59 -2.39 -0.02 1.44 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.43 8.33 8.92 -96.74 -0.86 7.47 16 28 H 0.12 5.10 5.61 -2.91 -0.02 5.08 16 29 H 0.10 5.23 6.16 -2.91 -0.02 5.21 16 30 H 0.29 12.91 8.30 -92.70 -0.77 12.14 16 31 H 0.11 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -63.09 298.36 1.84 -61.25 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.31 Total: 22.71 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 3.66 Total: -46.23 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: 0.35 Total: -80.06 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: -4.24 Total: -69.26 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Atomic # 16 Polarization: 73.97 SS G_CDS: -0.27 Total: 73.70 kcal Total: -63.09 1.84 -61.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088473476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.435 kcal (2) G-P(sol) polarization free energy of solvation -63.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds