Wall clock time and date at job start Tue Mar 31 2020 01:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00074 * 2 1 4 4 C 1.47203 * 109.46785 * 85.00180 * 3 2 1 5 5 N 3.39045 * 106.83090 * 49.01150 * 2 1 3 6 6 S 1.65597 * 120.00032 * 180.02562 * 2 1 3 7 7 O 1.42109 * 106.40218 * 203.53703 * 6 2 1 8 8 O 1.42097 * 106.40494 * 336.45629 * 6 2 1 9 9 C 1.76202 * 107.22217 * 89.99579 * 6 2 1 10 10 C 1.38626 * 119.74951 * 269.72829 * 9 6 2 11 11 C 1.37622 * 120.24632 * 179.71969 * 10 9 6 12 12 C 1.40710 * 119.74524 * 0.57012 * 11 10 9 13 13 C 1.41401 * 120.24655 * 179.68484 * 12 11 10 14 14 H 1.08003 * 119.99837 * 204.40832 * 13 12 11 15 15 C 1.39938 * 119.99804 * 24.39708 * 13 12 11 16 16 N 1.30822 * 120.00057 * 17.86493 * 15 13 12 17 17 Si 1.86802 * 119.99830 * 197.85974 * 15 13 12 18 18 H 1.48497 * 109.47321 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46955 * 120.00361 * 17 15 13 20 20 H 1.48498 * 109.47217 * 240.00007 * 17 15 13 21 21 C 1.40717 * 119.51298 * 359.70546 * 12 11 10 22 22 C 1.37619 * 119.74439 * 359.97438 * 21 12 11 23 23 H 1.09002 * 109.46858 * 269.99521 * 1 2 3 24 24 H 1.08997 * 109.46911 * 29.99858 * 1 2 3 25 25 H 1.08997 * 109.46881 * 149.99859 * 1 2 3 26 26 H 1.08998 * 109.47552 * 205.00505 * 3 2 1 27 27 H 1.08999 * 109.47311 * 325.00336 * 3 2 1 28 28 H 1.08004 * 119.87947 * 359.97438 * 10 9 6 29 29 H 1.07997 * 120.12786 * 180.28031 * 11 10 9 30 30 H 0.97005 * 119.99724 * 179.97438 * 16 15 13 31 31 H 1.08007 * 120.12950 * 179.97438 * 21 12 11 32 32 H 1.08000 * 119.87778 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3381 1.7541 1.3826 5 7 2.4467 2.1286 2.4496 6 16 2.2930 -1.4341 -0.0006 7 8 3.5760 -1.1570 0.5439 8 8 1.4114 -2.4067 0.5434 9 6 2.5537 -1.8852 -1.6839 10 6 1.6160 -2.6678 -2.3395 11 6 1.8065 -3.0214 -3.6558 12 6 2.9643 -2.5954 -4.3325 13 6 3.1740 -2.9580 -5.6830 14 1 4.1763 -2.9904 -6.0841 15 6 2.0829 -3.2753 -6.4998 16 7 0.8760 -2.9117 -6.1495 17 14 2.3497 -4.2177 -8.0904 18 1 3.7963 -4.5093 -8.2563 19 1 1.5904 -5.4930 -8.0435 20 1 1.8745 -3.4006 -9.2357 21 6 3.9122 -1.8061 -3.6553 22 6 3.6977 -1.4590 -2.3409 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 3.1857 1.1178 -0.4344 27 1 1.6502 2.0043 -0.5894 28 1 0.7305 -2.9979 -1.8165 29 1 1.0725 -3.6274 -4.1660 30 1 0.1197 -3.1313 -6.7159 31 1 4.8046 -1.4740 -4.1650 32 1 4.4237 -0.8530 -1.8192 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:29 Heat of formation + Delta-G solvation = -28.972173 kcal Electronic energy + Delta-G solvation = -19222.126169 eV Core-core repulsion = 16081.600792 eV Total energy + Delta-G solvation = -3140.525377 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -37.65119 -37.33449 -36.66023 -35.35676 -35.22590 -34.11649 -30.33698 -29.55521 -28.89713 -25.90913 -25.05330 -21.56928 -21.21451 -19.06658 -17.89658 -17.70846 -17.22043 -16.63470 -15.94021 -15.55619 -14.52981 -14.23462 -14.06119 -13.79719 -13.47547 -13.26174 -12.82685 -12.58861 -12.56204 -12.45314 -12.26667 -11.86983 -11.76024 -11.54763 -11.38568 -11.32101 -11.26825 -11.18199 -10.97742 -10.46427 -9.87607 -9.75487 -9.57489 -9.09959 -8.03850 -7.78433 -7.22061 -4.87419 0.96972 2.16289 2.63233 2.78559 2.83438 2.84473 2.87839 2.91575 3.57985 3.61410 3.95213 4.16872 4.45336 4.81907 4.83065 5.27366 5.30978 5.36400 5.58630 5.84585 5.91980 5.98680 6.04446 6.45875 6.61315 6.66866 6.87851 6.96827 7.26406 7.34611 7.52405 7.55532 7.70165 7.89259 8.24742 8.44038 8.57338 9.69133 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.004458 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.621398 B = 6279.531714 C = 6358.292020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.003 6.003 3 C 0.221 3.779 4 C 0.194 3.806 5 N -0.429 5.429 6 S 2.684 3.316 7 O -0.977 6.977 8 O -0.974 6.974 9 C -0.785 4.785 10 C -0.016 4.016 11 C -0.182 4.182 12 C 0.139 3.861 13 C -0.432 4.432 14 H 0.089 0.911 15 C 0.072 3.928 16 N -0.763 5.763 17 Si 0.917 3.083 18 H -0.256 1.256 19 H -0.267 1.267 20 H -0.270 1.270 21 C -0.237 4.237 22 C 0.000 4.000 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.289 0.711 31 H 0.101 0.899 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 4.795 0.767 5.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.838 5.838 3 C 0.091 3.909 4 C -0.126 4.126 5 N -0.107 5.107 6 S 2.785 3.215 7 O -0.968 6.968 8 O -0.964 6.964 9 C -0.882 4.882 10 C -0.036 4.036 11 C -0.202 4.202 12 C 0.135 3.865 13 C -0.459 4.459 14 H 0.107 0.893 15 C -0.150 4.150 16 N -0.386 5.386 17 Si 0.740 3.260 18 H -0.179 1.179 19 H -0.192 1.192 20 H -0.195 1.195 21 C -0.257 4.257 22 C -0.020 4.020 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.121 0.879 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.084 4.937 3.087 6.185 hybrid contribution -0.160 -0.414 -1.924 1.974 sum -2.243 4.523 1.163 5.181 Atomic orbital electron populations 1.21518 0.77941 1.03879 1.01857 1.57917 1.15586 1.20280 1.89984 1.18647 1.00281 0.87163 0.84764 1.30049 0.92990 0.93574 0.95984 1.81134 1.08749 1.08802 1.12045 1.01722 0.72437 0.71765 0.75607 1.93504 1.40009 1.84485 1.78764 1.93495 1.66610 1.57638 1.78684 1.29078 1.08557 1.26833 1.23766 1.20248 0.95171 0.93649 0.94531 1.21338 1.00738 1.05140 0.93001 1.17869 0.90481 0.85660 0.92513 1.20015 0.94774 1.36279 0.94816 0.89299 1.26141 0.94407 0.93582 1.00899 1.69814 1.00346 1.31467 1.36925 0.86103 0.80481 0.79693 0.79761 1.17934 1.19189 1.19482 1.21061 1.02484 1.06957 0.95215 1.20169 0.93109 0.94737 0.94024 0.92891 0.90715 0.90119 0.85483 0.85698 0.87866 0.85945 0.89948 0.88080 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.32 59.85 0.62 1.67 16 2 N -1.00 -13.64 3.14 -124.91 -0.39 -14.04 16 3 C 0.22 2.37 5.84 -6.83 -0.04 2.33 16 4 C 0.19 2.63 15.76 -20.76 -0.33 2.30 16 5 N -0.43 -6.90 18.54 42.16 0.78 -6.11 16 6 S 2.68 48.49 5.59 -107.50 -0.60 47.89 16 7 O -0.98 -19.32 16.23 -57.17 -0.93 -20.25 16 8 O -0.97 -19.87 16.32 -57.17 -0.93 -20.81 16 9 C -0.79 -15.89 6.00 -39.29 -0.24 -16.13 16 10 C -0.02 -0.34 9.49 -39.66 -0.38 -0.71 16 11 C -0.18 -4.28 8.70 -38.87 -0.34 -4.62 16 12 C 0.14 3.31 5.57 -106.82 -0.60 2.71 16 13 C -0.43 -10.04 9.05 -37.74 -0.34 -10.39 16 14 H 0.09 1.96 7.91 -52.48 -0.41 1.55 16 15 C 0.07 1.57 5.14 -17.35 -0.09 1.48 16 16 N -0.76 -17.12 10.95 55.55 0.61 -16.51 16 17 Si 0.92 16.19 29.60 -169.99 -5.03 11.16 16 18 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 19 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 20 H -0.27 -4.69 7.11 56.52 0.40 -4.28 16 21 C -0.24 -5.19 9.80 -38.87 -0.38 -5.57 16 22 C 0.00 0.00 9.49 -39.66 -0.38 -0.38 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 25 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 26 H 0.13 1.24 7.61 -51.93 -0.40 0.85 16 27 H 0.13 0.82 7.96 -51.93 -0.41 0.40 16 28 H 0.10 2.05 7.59 -52.48 -0.40 1.65 16 29 H 0.12 2.93 6.16 -52.49 -0.32 2.61 16 30 H 0.29 5.78 8.30 -40.82 -0.34 5.44 16 31 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 32 H 0.11 1.86 7.60 -52.49 -0.40 1.46 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -30.04 301.92 -7.57 -37.60 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.14 Total: 3.80 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -2.48 Total: -27.29 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 1.00 Total: -36.66 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -1.86 Total: -41.06 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Atomic # 16 Polarization: 48.49 SS G_CDS: -0.60 Total: 47.89 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.04 -7.57 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.633 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds