Wall clock time and date at job start Tue Mar 31 2020 01:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21312 * 119.99962 * 2 1 4 4 C 1.46794 * 119.99751 * 180.02562 * 2 1 3 5 5 C 1.40251 * 120.42140 * 353.95055 * 4 2 1 6 6 C 1.39361 * 118.21450 * 180.02562 * 5 4 2 7 7 C 1.47501 * 120.51530 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00727 * 359.97438 * 7 6 5 9 9 O 1.21601 * 119.99838 * 179.97438 * 7 6 5 10 10 C 1.40943 * 118.96258 * 0.02562 * 6 5 4 11 11 S 1.76199 * 119.63843 * 179.97438 * 10 6 5 12 12 C 1.76202 * 99.99833 * 179.97438 * 11 10 6 13 13 H 1.08000 * 120.00128 * 0.02562 * 12 11 10 14 14 C 1.38957 * 119.99651 * 179.97438 * 12 11 10 15 15 N 1.31428 * 120.00113 * 359.72774 * 14 12 11 16 16 Si 1.86805 * 119.99553 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47227 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47109 * 120.00173 * 16 14 12 19 19 H 1.48501 * 109.46752 * 240.00051 * 16 14 12 20 20 N 1.32715 * 120.72423 * 0.25114 * 10 6 5 21 21 C 1.31397 * 121.96693 * 359.47307 * 20 10 6 22 22 C 1.50704 * 119.51221 * 180.27135 * 21 20 10 23 23 H 1.08997 * 109.47547 * 240.00140 * 1 2 3 24 24 H 1.09003 * 109.47159 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47462 * 119.99741 * 1 2 3 26 26 H 1.08002 * 120.88966 * 0.02562 * 5 4 2 27 27 H 0.97003 * 119.99396 * 359.97438 * 8 7 6 28 28 H 0.97003 * 120.00871 * 179.97438 * 8 7 6 29 29 H 0.96999 * 119.99959 * 180.02562 * 15 14 12 30 30 H 1.09003 * 109.46557 * 263.55571 * 22 21 20 31 31 H 1.08996 * 109.47092 * 23.55581 * 22 21 20 32 32 H 1.08999 * 109.47086 * 143.55808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2713 -0.0006 5 6 1.5544 -2.4877 0.1263 6 6 2.2969 -3.6670 0.1207 7 6 1.6267 -4.9746 0.2504 8 7 0.2863 -5.0355 0.3761 9 8 2.2838 -5.9978 0.2438 10 6 3.6981 -3.5907 -0.0108 11 16 4.6543 -5.0706 -0.0194 12 6 6.2693 -4.3903 -0.2032 13 1 6.4000 -3.3204 -0.2716 14 6 7.3748 -5.2303 -0.2589 15 7 7.2163 -6.5319 -0.1692 16 14 9.0870 -4.5089 -0.4530 17 1 8.9953 -3.0285 -0.5242 18 1 9.9230 -4.8982 0.7109 19 1 9.7037 -5.0267 -1.7008 20 7 4.3056 -2.4161 -0.1228 21 6 3.6373 -1.2848 -0.1265 22 6 4.3832 0.0176 -0.2629 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 0.4792 -2.5098 0.2258 27 1 -0.2378 -4.2192 0.3817 28 1 -0.1545 -5.8954 0.4610 29 1 7.9881 -7.1182 -0.2078 30 1 4.5518 0.4449 0.7256 31 1 5.3419 -0.1620 -0.7494 32 1 3.7953 0.7118 -0.8634 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095117486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:50 Heat of formation + Delta-G solvation = -47.167880 kcal Electronic energy + Delta-G solvation = -19117.823587 eV Core-core repulsion = 15976.509185 eV Total energy + Delta-G solvation = -3141.314402 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.15125 -38.92387 -37.71746 -33.75835 -32.92054 -32.37704 -31.86753 -29.80130 -27.28238 -25.87720 -24.11582 -22.77629 -20.86221 -19.51693 -18.14546 -17.54030 -16.90589 -16.05008 -15.53026 -15.20192 -15.09134 -15.03735 -14.33638 -14.13403 -13.87628 -13.43117 -13.41619 -12.67799 -12.37526 -12.33980 -12.05072 -11.86413 -11.57742 -11.28374 -11.26023 -11.02022 -10.19495 -10.10659 -9.80696 -9.47887 -9.42234 -9.30289 -8.73433 -8.60272 -8.37887 -6.96271 -6.63418 -4.28433 0.92151 1.35980 2.70495 2.94149 3.09416 3.16027 3.26949 3.40367 3.80265 3.92071 4.31397 4.39707 4.74968 4.83653 4.89137 5.11921 5.21721 5.29836 5.38620 5.56820 5.61566 5.85261 6.02506 6.11649 6.16201 6.23754 6.45613 6.58020 7.01263 7.10747 7.40865 7.58598 7.86867 8.28581 8.59098 8.63559 8.87691 10.39452 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.006503 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.143241 B = 4304.382796 C = 5903.515656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.403 3.597 3 O -0.477 6.477 4 C -0.314 4.314 5 C 0.036 3.964 6 C -0.248 4.248 7 C 0.562 3.438 8 N -0.861 5.861 9 O -0.516 6.516 10 C 0.120 3.880 11 S 0.295 5.705 12 C -0.578 4.578 13 H 0.113 0.887 14 C 0.079 3.921 15 N -0.856 5.856 16 Si 0.928 3.072 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.276 1.276 20 N -0.495 5.495 21 C 0.237 3.763 22 C -0.108 4.108 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.393 0.607 28 H 0.400 0.600 29 H 0.279 0.721 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 7.065 0.477 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.284 3.716 3 O -0.356 6.356 4 C -0.327 4.327 5 C 0.009 3.991 6 C -0.265 4.265 7 C 0.349 3.651 8 N -0.426 5.426 9 O -0.393 6.393 10 C -0.127 4.127 11 S 0.560 5.440 12 C -0.725 4.725 13 H 0.131 0.869 14 C -0.133 4.133 15 N -0.488 5.488 16 Si 0.752 3.248 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.201 1.201 20 N -0.209 5.209 21 C 0.081 3.919 22 C -0.165 4.165 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.147 0.853 27 H 0.222 0.778 28 H 0.231 0.769 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.682 5.202 0.469 12.796 hybrid contribution -0.180 1.557 -0.049 1.568 sum -11.862 6.759 0.420 13.659 Atomic orbital electron populations 1.22229 0.94987 1.04445 1.03912 1.21953 0.90822 0.87598 0.71204 1.90465 1.71466 1.34565 1.39120 1.20527 0.95311 0.94511 1.22301 1.21547 0.98278 0.90949 0.88287 1.19897 0.94059 0.93131 1.19372 1.18010 0.82021 0.88845 0.76198 1.43672 1.07597 1.11952 1.79379 1.90823 1.63539 1.35550 1.49376 1.24749 0.93504 0.99990 0.94446 1.84729 0.96451 0.96317 1.66486 1.24421 0.93690 0.99266 1.55118 0.86936 1.25281 1.00758 0.94465 0.92763 1.69905 1.32735 1.02965 1.43236 0.85947 0.80564 0.80046 0.78197 1.18633 1.20134 1.20135 1.68162 1.37741 0.96572 1.18427 1.21738 0.89617 0.94440 0.86112 1.21013 0.99970 0.92305 1.03233 0.89454 0.90228 0.89392 0.85334 0.77813 0.76926 0.91120 0.90394 0.91413 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 9.05 36.00 0.33 -1.42 16 2 C 0.40 5.56 7.15 -30.85 -0.22 5.34 16 3 O -0.48 -7.75 14.06 5.53 0.08 -7.67 16 4 C -0.31 -5.08 5.88 -104.94 -0.62 -5.69 16 5 C 0.04 0.53 9.03 -38.41 -0.35 0.18 16 6 C -0.25 -4.60 5.90 -104.68 -0.62 -5.22 16 7 C 0.56 9.81 8.03 -12.49 -0.10 9.71 16 8 N -0.86 -9.59 8.83 30.45 0.27 -9.32 16 9 O -0.52 -11.20 14.61 5.28 0.08 -11.12 16 10 C 0.12 2.75 7.02 -16.15 -0.11 2.64 16 11 S 0.29 7.63 18.54 -107.50 -1.99 5.64 16 12 C -0.58 -15.93 9.26 31.00 0.29 -15.65 16 13 H 0.11 3.13 6.53 -52.49 -0.34 2.79 16 14 C 0.08 2.12 5.50 -17.46 -0.10 2.03 16 15 N -0.86 -23.80 13.21 55.50 0.73 -23.07 16 16 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 17 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 N -0.49 -11.24 8.31 -7.44 -0.06 -11.30 16 21 C 0.24 4.57 6.83 -82.03 -0.56 4.01 16 22 C -0.11 -1.84 8.85 36.01 0.32 -1.52 16 23 H 0.09 0.59 7.94 -51.93 -0.41 0.18 16 24 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.13 1.18 5.54 -52.49 -0.29 0.89 16 27 H 0.39 3.00 6.92 -40.82 -0.28 2.72 16 28 H 0.40 3.78 8.93 -40.82 -0.36 3.41 16 29 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.52 5.84 -51.93 -0.30 1.21 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -32.93 293.46 -6.06 -38.99 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.82 Total: 3.36 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.74 Total: -5.59 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.94 Total: -43.69 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.15 Total: -18.80 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 7.63 SS G_CDS: -1.99 Total: 5.64 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.93 -6.06 -38.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095117486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.181 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds