Wall clock time and date at job start Tue Mar 31 2020 01:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21312 * 119.99962 * 2 1 4 4 C 1.46794 * 119.99751 * 180.02562 * 2 1 3 5 5 C 1.40251 * 120.42140 * 353.95055 * 4 2 1 6 6 C 1.39361 * 118.21450 * 180.02562 * 5 4 2 7 7 C 1.47501 * 120.51530 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00727 * 359.97438 * 7 6 5 9 9 O 1.21601 * 119.99838 * 179.97438 * 7 6 5 10 10 C 1.40943 * 118.96258 * 0.02562 * 6 5 4 11 11 S 1.76199 * 119.63843 * 179.97438 * 10 6 5 12 12 C 1.76202 * 99.99833 * 179.97438 * 11 10 6 13 13 H 1.08000 * 120.00128 * 0.02562 * 12 11 10 14 14 C 1.38957 * 119.99651 * 179.97438 * 12 11 10 15 15 N 1.31428 * 120.00113 * 359.72774 * 14 12 11 16 16 Si 1.86805 * 119.99553 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47227 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47109 * 120.00173 * 16 14 12 19 19 H 1.48501 * 109.46752 * 240.00051 * 16 14 12 20 20 N 1.32715 * 120.72423 * 0.25114 * 10 6 5 21 21 C 1.31397 * 121.96693 * 359.47307 * 20 10 6 22 22 C 1.50704 * 119.51221 * 180.27135 * 21 20 10 23 23 H 1.08997 * 109.47547 * 240.00140 * 1 2 3 24 24 H 1.09003 * 109.47159 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47462 * 119.99741 * 1 2 3 26 26 H 1.08002 * 120.88966 * 0.02562 * 5 4 2 27 27 H 0.97003 * 119.99396 * 359.97438 * 8 7 6 28 28 H 0.97003 * 120.00871 * 179.97438 * 8 7 6 29 29 H 0.96999 * 119.99959 * 180.02562 * 15 14 12 30 30 H 1.09003 * 109.46557 * 263.55571 * 22 21 20 31 31 H 1.08996 * 109.47092 * 23.55581 * 22 21 20 32 32 H 1.08999 * 109.47086 * 143.55808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2713 -0.0006 5 6 1.5544 -2.4877 0.1263 6 6 2.2969 -3.6670 0.1207 7 6 1.6267 -4.9746 0.2504 8 7 0.2863 -5.0355 0.3761 9 8 2.2838 -5.9978 0.2438 10 6 3.6981 -3.5907 -0.0108 11 16 4.6543 -5.0706 -0.0194 12 6 6.2693 -4.3903 -0.2032 13 1 6.4000 -3.3204 -0.2716 14 6 7.3748 -5.2303 -0.2589 15 7 7.2163 -6.5319 -0.1692 16 14 9.0870 -4.5089 -0.4530 17 1 8.9953 -3.0285 -0.5242 18 1 9.9230 -4.8982 0.7109 19 1 9.7037 -5.0267 -1.7008 20 7 4.3056 -2.4161 -0.1228 21 6 3.6373 -1.2848 -0.1265 22 6 4.3832 0.0176 -0.2629 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 0.4792 -2.5098 0.2258 27 1 -0.2378 -4.2192 0.3817 28 1 -0.1545 -5.8954 0.4610 29 1 7.9881 -7.1182 -0.2078 30 1 4.5518 0.4449 0.7256 31 1 5.3419 -0.1620 -0.7494 32 1 3.7953 0.7118 -0.8634 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095117486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:50 Heat of formation + Delta-G solvation = -73.499762 kcal Electronic energy + Delta-G solvation = -19118.965423 eV Core-core repulsion = 15976.509185 eV Total energy + Delta-G solvation = -3142.456238 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62545 -40.26245 -39.16990 -35.12436 -34.82648 -33.69097 -33.38542 -30.87953 -28.61128 -27.83051 -25.60085 -24.18600 -22.25123 -20.81029 -19.87462 -18.88133 -18.35024 -17.53921 -17.01136 -16.82324 -16.52857 -16.33942 -15.65930 -15.48463 -15.27984 -15.01910 -14.81967 -14.12441 -13.92471 -13.47460 -13.27911 -13.17954 -13.02259 -12.85146 -12.77272 -12.72428 -11.95971 -11.67806 -11.49040 -10.96716 -10.88174 -10.58685 -10.35461 -10.16370 -10.05551 -8.79389 -8.53592 -6.30895 -0.54123 -0.03133 1.18489 1.30896 1.35376 1.42311 1.51102 2.01553 2.11200 2.59049 2.77769 2.91221 2.98689 3.26060 3.58726 3.74458 3.89183 4.05467 4.37670 4.52034 4.59562 4.71935 4.72894 4.80193 4.83473 5.02708 5.13011 5.34686 5.44350 5.61497 6.02014 6.24417 6.53734 6.70507 6.91233 6.98610 7.45509 8.52410 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.006503 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.143241 B = 4304.382796 C = 5903.515656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.407 3.593 3 O -0.497 6.497 4 C -0.291 4.291 5 C 0.059 3.941 6 C -0.246 4.246 7 C 0.560 3.440 8 N -0.823 5.823 9 O -0.561 6.561 10 C 0.129 3.871 11 S 0.178 5.822 12 C -0.597 4.597 13 H 0.095 0.905 14 C 0.029 3.971 15 N -0.901 5.901 16 Si 0.992 3.008 17 H -0.267 1.267 18 H -0.266 1.266 19 H -0.266 1.266 20 N -0.532 5.532 21 C 0.204 3.796 22 C -0.102 4.102 23 H 0.121 0.879 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.201 0.799 27 H 0.417 0.583 28 H 0.415 0.585 29 H 0.280 0.720 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.163 9.968 0.689 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.289 3.711 3 O -0.377 6.377 4 C -0.302 4.302 5 C 0.033 3.967 6 C -0.263 4.263 7 C 0.346 3.654 8 N -0.389 5.389 9 O -0.442 6.442 10 C -0.119 4.119 11 S 0.438 5.562 12 C -0.744 4.744 13 H 0.113 0.887 14 C -0.178 4.178 15 N -0.536 5.536 16 Si 0.814 3.186 17 H -0.191 1.191 18 H -0.191 1.191 19 H -0.191 1.191 20 N -0.246 5.246 21 C 0.054 3.946 22 C -0.159 4.159 23 H 0.139 0.861 24 H 0.107 0.893 25 H 0.136 0.864 26 H 0.218 0.782 27 H 0.249 0.751 28 H 0.248 0.752 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.371 8.249 0.683 18.345 hybrid contribution 0.677 1.150 -0.087 1.337 sum -15.694 9.399 0.596 18.303 Atomic orbital electron populations 1.22294 0.89400 1.06337 1.06806 1.22615 0.93416 0.85514 0.69600 1.90484 1.72740 1.35067 1.39412 1.21198 0.94205 0.97175 1.17603 1.22180 1.01280 0.88117 0.85129 1.20280 0.92597 0.95730 1.17657 1.17964 0.83781 0.87555 0.76138 1.43277 1.05129 1.14046 1.76491 1.90840 1.65133 1.36814 1.51402 1.24699 0.94955 0.98732 0.93548 1.84824 0.97510 0.99567 1.74263 1.24281 0.94742 0.98216 1.57162 0.88718 1.26123 1.04207 0.94799 0.92622 1.70005 1.33483 1.04002 1.46069 0.85007 0.76231 0.78713 0.78690 1.19124 1.19108 1.19059 1.68073 1.39700 0.97556 1.19300 1.22338 0.91805 0.94013 0.86434 1.21030 0.99603 0.91553 1.03726 0.86080 0.89275 0.86407 0.78191 0.75062 0.75241 0.91037 0.89693 0.92438 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 9.05 71.24 0.64 -1.14 16 2 C 0.41 8.87 7.15 27.92 0.20 9.07 16 3 O -0.50 -14.02 14.06 -3.13 -0.04 -14.06 16 4 C -0.29 -8.12 5.88 -20.07 -0.12 -8.24 16 5 C 0.06 1.39 9.03 23.03 0.21 1.59 16 6 C -0.25 -8.62 5.90 -19.90 -0.12 -8.74 16 7 C 0.56 18.43 8.03 86.69 0.70 19.13 16 8 N -0.82 -14.35 8.83 -175.84 -1.55 -15.91 16 9 O -0.56 -24.93 14.61 -4.03 -0.06 -24.99 16 10 C 0.13 6.05 7.02 85.22 0.60 6.65 16 11 S 0.18 10.01 18.54 -56.49 -1.05 8.96 16 12 C -0.60 -35.71 9.26 67.99 0.63 -35.08 16 13 H 0.09 5.73 6.53 -2.91 -0.02 5.71 16 14 C 0.03 1.65 5.50 84.93 0.47 2.12 16 15 N -0.90 -54.00 13.21 21.67 0.29 -53.71 16 16 Si 0.99 45.22 29.55 68.60 2.03 47.24 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 N -0.53 -24.82 8.31 -177.44 -1.47 -26.29 16 21 C 0.20 7.66 6.83 43.11 0.29 7.95 16 22 C -0.10 -3.40 8.85 71.24 0.63 -2.77 16 23 H 0.12 0.45 7.94 -2.39 -0.02 0.44 16 24 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 25 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.20 1.79 5.54 -2.91 -0.02 1.77 16 27 H 0.42 3.28 6.92 -92.71 -0.64 2.64 16 28 H 0.41 6.00 8.93 -92.71 -0.83 5.17 16 29 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 3.24 5.84 -2.39 -0.01 3.23 16 Total: -1.00 -83.62 293.46 2.00 -81.62 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.26 Total: 6.58 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.13 Total: -9.45 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -2.74 Total: -95.91 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.10 Total: -39.05 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 10.01 SS G_CDS: -1.05 Total: 8.96 kcal Total: -83.62 2.00 -81.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095117486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.118 kcal (2) G-P(sol) polarization free energy of solvation -83.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds