Wall clock time and date at job start Tue Mar 31 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48501 * 109.47438 * 240.00428 * 3 2 1 5 5 H 1.48504 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46866 * 120.00308 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.09003 * 110.85450 * 62.34040 * 12 10 9 14 14 C 1.54627 * 110.96515 * 298.55065 * 12 10 9 15 15 C 1.51289 * 104.19431 * 217.07815 * 14 12 10 16 16 O 1.21277 * 124.94441 * 196.29358 * 15 14 12 17 17 N 1.34423 * 110.11174 * 16.25137 * 15 14 12 18 18 C 1.46499 * 124.34588 * 180.42420 * 17 15 14 19 19 C 1.53002 * 109.47058 * 90.03311 * 18 17 15 20 20 F 1.39898 * 109.47254 * 59.99473 * 19 18 17 21 21 F 1.39898 * 109.47159 * 180.02562 * 19 18 17 22 22 F 1.39902 * 109.46722 * 299.99584 * 19 18 17 23 23 C 1.46767 * 111.30192 * 0.41004 * 17 15 14 24 24 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 26 26 H 1.08996 * 110.49233 * 335.75799 * 14 12 10 27 27 H 1.09003 * 110.48380 * 98.40513 * 14 12 10 28 28 H 1.09002 * 109.47151 * 210.02611 * 18 17 15 29 29 H 1.08995 * 109.47679 * 330.02949 * 18 17 15 30 30 H 1.08994 * 110.24426 * 223.97905 * 23 17 15 31 31 H 1.09005 * 110.24382 * 101.97876 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.6396 -4.9581 -0.9154 14 6 0.3698 -5.0035 1.2550 15 6 0.4598 -6.4722 1.6067 16 8 -0.2924 -7.0535 2.3598 17 7 1.4942 -7.0392 0.9622 18 6 1.8607 -8.4535 1.0709 19 6 1.1256 -9.2549 -0.0054 20 9 1.4842 -8.7760 -1.2700 21 9 1.4751 -10.6055 0.0987 22 9 -0.2552 -9.1161 0.1715 23 6 2.2090 -6.0596 0.1356 24 1 -0.4850 0.8401 0.0004 25 1 0.3532 -2.3907 -0.0005 26 1 0.7700 -4.3923 2.0639 27 1 -0.6620 -4.7253 1.0400 28 1 2.9365 -8.5617 0.9330 29 1 1.5813 -8.8267 2.0561 30 1 2.4358 -6.4849 -0.8420 31 1 3.1265 -5.7445 0.6327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126766199.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:14 Heat of formation + Delta-G solvation = -247.227952 kcal Electronic energy + Delta-G solvation = -22228.203397 eV Core-core repulsion = 18093.604128 eV Total energy + Delta-G solvation = -4134.599269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.10812 -48.63321 -48.60993 -41.80674 -39.91636 -37.50660 -35.97985 -34.57026 -33.16597 -29.99695 -28.75646 -27.10309 -24.75335 -23.86922 -21.12737 -20.77009 -19.86592 -19.53917 -19.52273 -18.87350 -18.08354 -17.56873 -16.92654 -16.49836 -15.99077 -15.69586 -15.62524 -15.51553 -15.47579 -15.04333 -14.78911 -14.76220 -14.74376 -14.56181 -14.15022 -13.92045 -13.55716 -13.40847 -13.14271 -12.90473 -12.53346 -12.38455 -12.30470 -12.08672 -11.49484 -11.19963 -10.37008 -10.10348 -10.00734 -8.45804 -5.94553 1.18269 1.41466 1.45701 1.51770 1.56259 1.86011 1.99274 2.30910 2.78431 2.89894 3.04819 3.18588 3.22936 3.29639 3.52065 3.87603 4.01365 4.07463 4.23375 4.47767 4.52678 4.61144 4.81924 4.98997 5.17328 5.43746 5.71736 5.99384 6.56813 6.86335 7.11595 7.54464 8.06792 8.70663 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.039768 B = 0.003914 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.911411 B = 7151.742881 C = 7438.627815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.085 0.915 9 N -0.562 5.562 10 C 0.452 3.548 11 O -0.625 6.625 12 C -0.103 4.103 13 H 0.128 0.872 14 C -0.139 4.139 15 C 0.527 3.473 16 O -0.550 6.550 17 N -0.615 5.615 18 C 0.086 3.914 19 C 0.432 3.568 20 F -0.185 7.185 21 F -0.179 7.179 22 F -0.193 7.193 23 C 0.126 3.874 24 H 0.278 0.722 25 H 0.398 0.602 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -15.150 0.045 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.814 3.186 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.197 5.197 10 C 0.239 3.761 11 O -0.512 6.512 12 C -0.125 4.125 13 H 0.146 0.854 14 C -0.179 4.179 15 C 0.317 3.683 16 O -0.428 6.428 17 N -0.348 5.348 18 C -0.038 4.038 19 C 0.377 3.623 20 F -0.166 7.166 21 F -0.160 7.160 22 F -0.175 7.175 23 C 0.004 3.996 24 H 0.087 0.913 25 H 0.232 0.768 26 H 0.123 0.877 27 H 0.142 0.858 28 H 0.181 0.819 29 H 0.153 0.847 30 H 0.124 0.876 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.779 -15.357 0.425 15.466 hybrid contribution -0.409 0.751 -0.291 0.903 sum 1.370 -14.606 0.134 14.671 Atomic orbital electron populations 1.69662 1.06859 1.29458 1.49699 1.26010 0.96433 1.02397 0.96077 0.85023 0.77780 0.76781 0.79012 1.19597 1.19924 1.19666 1.19677 0.92906 0.83795 1.50089 0.89735 1.41896 1.09498 1.04600 1.63705 1.20103 0.87708 0.85361 0.82893 1.90513 1.15399 1.87720 1.57601 1.22005 0.97377 0.92535 1.00560 0.85381 1.22338 1.03756 0.93241 0.98583 1.21101 0.78974 0.89855 0.78409 1.90716 1.44815 1.69831 1.37400 1.48176 1.31065 1.08257 1.47329 1.22768 1.03422 0.79232 0.98374 1.21540 0.78112 0.78940 0.83751 1.93186 1.91460 1.87917 1.44051 1.93193 1.91749 1.34985 1.96112 1.93208 1.33370 1.95598 1.95311 1.22076 0.94734 0.86156 0.96653 0.91261 0.76767 0.87653 0.85808 0.81870 0.84660 0.87613 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.11 13.05 21.67 0.28 -46.83 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 0.99 40.73 29.55 68.60 2.03 42.75 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.34 -17.67 9.68 84.04 0.81 -16.86 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 9 N -0.56 -26.18 5.24 -306.98 -1.61 -27.78 16 10 C 0.45 18.81 7.02 87.66 0.62 19.42 16 11 O -0.62 -30.29 15.15 -3.07 -0.05 -30.33 16 12 C -0.10 -3.00 3.54 -10.48 -0.04 -3.04 16 13 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 14 C -0.14 -3.88 6.37 30.59 0.19 -3.68 16 15 C 0.53 15.05 7.72 87.90 0.68 15.73 16 16 O -0.55 -18.86 17.59 -3.02 -0.05 -18.91 16 17 N -0.62 -14.25 2.81 -817.98 -2.30 -16.54 16 18 C 0.09 1.45 5.91 86.38 0.51 1.96 16 19 C 0.43 8.70 3.29 71.98 0.24 8.93 16 20 F -0.18 -3.94 16.53 44.97 0.74 -3.19 16 21 F -0.18 -3.38 17.32 44.97 0.78 -2.60 16 22 F -0.19 -5.04 16.96 44.97 0.76 -4.28 16 23 C 0.13 3.10 6.58 86.83 0.57 3.67 16 24 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 25 H 0.40 17.73 7.90 -92.71 -0.73 17.00 16 26 H 0.11 3.17 7.89 -2.39 -0.02 3.15 16 27 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.16 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.14 2.11 7.92 -2.39 -0.02 2.09 16 30 H 0.11 2.24 7.52 -2.39 -0.02 2.22 16 31 H 0.09 2.48 7.06 -2.38 -0.02 2.46 16 Total: -1.00 -65.14 289.31 5.11 -60.03 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.47 Total: 21.52 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 4.05 Total: 26.17 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -3.62 Total: -91.16 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.10 Total: -49.24 kcal Atomic # 9 Polarization: -12.36 SS G_CDS: 2.28 Total: -10.07 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -65.14 5.11 -60.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126766199.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.197 kcal (2) G-P(sol) polarization free energy of solvation -65.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds