Wall clock time and date at job start Tue Mar 31 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 7 12 12 C 1.35896 * 119.69320 * 269.72677 * 11 10 9 13 13 N 1.29821 * 123.34351 * 179.68355 * 12 11 10 14 14 C 1.35711 * 121.61068 * 0.59679 * 13 12 11 15 15 C 1.39540 * 121.58937 * 179.71204 * 14 13 12 16 16 C 1.37897 * 119.70932 * 180.02562 * 15 14 13 17 17 F 1.35101 * 119.63307 * 179.97438 * 16 15 14 18 18 C 1.39356 * 120.73860 * 359.95982 * 16 15 14 19 19 F 1.35096 * 119.75746 * 179.97438 * 18 16 15 20 20 C 1.37840 * 120.48966 * 0.02562 * 18 16 15 21 21 C 1.39422 * 119.53319 * 359.97438 * 20 18 16 22 22 C 1.35335 * 119.69006 * 90.00359 * 11 10 9 23 23 O 1.21737 * 121.28696 * 0.02562 * 22 11 10 24 24 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 26 26 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 27 27 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 28 28 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 29 29 H 1.07998 * 118.32692 * 359.97438 * 12 11 10 30 30 H 1.08005 * 120.14721 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.23731 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 7 5.4864 -2.6367 -0.0022 12 6 6.1586 -2.6428 -1.1832 13 7 7.4541 -2.6373 -1.2670 14 6 8.2385 -2.6369 -0.1595 15 6 9.6309 -2.6369 -0.2500 16 6 10.3906 -2.6370 0.9008 17 9 11.7387 -2.6375 0.8114 18 6 9.7834 -2.6362 2.1551 19 9 10.5468 -2.6368 3.2697 20 6 8.4095 -2.6359 2.2670 21 6 7.6261 -2.6358 1.1138 22 6 6.1576 -2.6364 1.1730 23 8 5.5679 -2.6365 2.2379 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 -0.8911 26 1 3.8751 -0.6805 0.8889 27 1 3.6583 -3.1503 0.8892 28 1 3.6577 -3.1507 -0.8908 29 1 5.5859 -2.6479 -2.0988 30 1 10.1116 -2.6368 -1.2172 31 1 7.9432 -2.6348 3.2412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128985610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:46 Heat of formation + Delta-G solvation = -76.907827 kcal Electronic energy + Delta-G solvation = -20812.715769 eV Core-core repulsion = 17116.271360 eV Total energy + Delta-G solvation = -3696.444409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75409 -48.80800 -41.66603 -38.54338 -37.48460 -34.80118 -33.02863 -31.65961 -30.34425 -29.92818 -26.04327 -24.97869 -23.84569 -22.63775 -21.15492 -19.53764 -19.14120 -17.97761 -17.30238 -16.84744 -16.64622 -16.42816 -15.90967 -15.70522 -15.22424 -14.73876 -14.43636 -14.39502 -14.32218 -13.73222 -13.54435 -13.31981 -13.27490 -12.97551 -12.36582 -12.05390 -11.67462 -11.23464 -10.85183 -10.47394 -10.33910 -10.13438 -9.95479 -9.75168 -9.48338 -9.33339 -8.72256 -8.20495 -6.22641 -4.24347 0.10153 0.29178 1.92436 2.32498 2.48812 3.18521 3.28193 3.31031 3.34305 3.62557 3.70414 4.00815 4.10133 4.26265 4.29388 4.67297 4.83797 4.99595 5.09589 5.15263 5.39598 5.49606 5.55221 5.66306 5.83118 6.12524 6.17749 6.32813 6.50237 6.88573 7.04502 7.48887 7.65883 7.72795 8.27404 8.78261 9.37559 10.89834 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.004136 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.085855 B = 6768.338220 C = 6921.245382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.101 3.899 11 N -0.539 5.539 12 C 0.404 3.596 13 N -0.543 5.543 14 C 0.185 3.815 15 C -0.128 4.128 16 C 0.116 3.884 17 F -0.122 7.122 18 C 0.037 3.963 19 F -0.126 7.126 20 C -0.041 4.041 21 C -0.189 4.189 22 C 0.546 3.454 23 O -0.492 6.492 24 H 0.266 0.734 25 H 0.018 0.982 26 H 0.025 0.975 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.208 0.792 30 H 0.161 0.839 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.356 -6.182 -1.860 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.096 0.904 9 C -0.062 4.062 10 C -0.018 4.018 11 N -0.258 5.258 12 C 0.117 3.883 13 N -0.266 5.266 14 C 0.074 3.926 15 C -0.148 4.148 16 C 0.095 3.905 17 F -0.100 7.100 18 C 0.016 3.984 19 F -0.105 7.105 20 C -0.061 4.061 21 C -0.196 4.196 22 C 0.337 3.663 23 O -0.365 6.365 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.225 0.775 30 H 0.179 0.821 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 18.387 -6.066 -1.751 19.441 hybrid contribution 0.360 1.020 0.886 1.398 sum 18.747 -5.046 -0.865 19.433 Atomic orbital electron populations 1.69884 1.06252 1.27275 1.49767 1.24935 0.94714 0.99098 0.94046 0.86820 0.80424 0.83699 0.78643 1.20009 1.21011 1.19194 1.20808 0.88155 0.94987 1.52625 0.90430 1.19922 0.98232 0.90619 0.97393 1.22389 0.72214 1.02393 1.04838 1.47134 1.11998 1.60174 1.06490 1.25016 0.89089 0.83963 0.90197 1.68759 1.02974 1.26331 1.28490 1.18504 0.93139 0.93135 0.87813 1.20558 0.91443 1.04654 0.98128 1.17621 0.77689 1.02487 0.92730 1.91559 1.28029 1.93505 1.96926 1.17376 0.88971 1.10451 0.81592 1.91542 1.74986 1.94340 1.49590 1.20843 0.90288 0.94826 1.00153 1.20493 0.93636 1.11137 0.94337 1.18124 0.86808 0.77372 0.83965 1.90915 1.70277 1.47199 1.28107 0.92364 0.96380 0.95693 0.88384 0.88690 0.77545 0.82098 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 20.77 27.47 -169.99 -4.67 16.11 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.53 -13.76 9.66 -34.44 -0.33 -14.10 16 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.02 -0.50 4.37 -27.88 -0.12 -0.63 16 10 C 0.10 1.69 5.30 -4.04 -0.02 1.66 16 11 N -0.54 -7.97 2.61 -118.88 -0.31 -8.28 16 12 C 0.40 4.73 11.41 -90.15 -1.03 3.70 16 13 N -0.54 -6.73 10.37 -12.01 -0.12 -6.85 16 14 C 0.19 2.37 6.63 -84.51 -0.56 1.81 16 15 C -0.13 -1.39 9.99 -39.22 -0.39 -1.78 16 16 C 0.12 1.32 7.29 -39.29 -0.29 1.03 16 17 F -0.12 -1.38 17.16 2.25 0.04 -1.34 16 18 C 0.04 0.44 7.29 -39.31 -0.29 0.16 16 19 F -0.13 -1.57 17.16 2.25 0.04 -1.53 16 20 C -0.04 -0.52 9.64 -39.29 -0.38 -0.90 16 21 C -0.19 -2.67 5.90 -104.76 -0.62 -3.28 16 22 C 0.55 8.99 7.66 -12.48 -0.10 8.90 16 23 O -0.49 -9.62 16.31 5.16 0.08 -9.53 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 26 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 27 H 0.10 1.77 7.46 -51.93 -0.39 1.38 16 28 H 0.09 1.30 7.99 -51.93 -0.41 0.88 16 29 H 0.21 1.61 7.98 -52.49 -0.42 1.19 16 30 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.16 1.94 7.83 -52.49 -0.41 1.53 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -30.75 286.77 -6.47 -37.22 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -2.41 Total: -3.26 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -4.22 Total: -1.45 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.34 Total: -40.53 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.75 -6.47 -37.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128985610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.686 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds