Wall clock time and date at job start Tue Mar 31 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 7 12 12 C 1.35896 * 119.69320 * 269.72677 * 11 10 9 13 13 N 1.29821 * 123.34351 * 179.68355 * 12 11 10 14 14 C 1.35711 * 121.61068 * 0.59679 * 13 12 11 15 15 C 1.39540 * 121.58937 * 179.71204 * 14 13 12 16 16 C 1.37897 * 119.70932 * 180.02562 * 15 14 13 17 17 F 1.35101 * 119.63307 * 179.97438 * 16 15 14 18 18 C 1.39356 * 120.73860 * 359.95982 * 16 15 14 19 19 F 1.35096 * 119.75746 * 179.97438 * 18 16 15 20 20 C 1.37840 * 120.48966 * 0.02562 * 18 16 15 21 21 C 1.39422 * 119.53319 * 359.97438 * 20 18 16 22 22 C 1.35335 * 119.69006 * 90.00359 * 11 10 9 23 23 O 1.21737 * 121.28696 * 0.02562 * 22 11 10 24 24 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 26 26 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 27 27 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 28 28 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 29 29 H 1.07998 * 118.32692 * 359.97438 * 12 11 10 30 30 H 1.08005 * 120.14721 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.23731 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 7 5.4864 -2.6367 -0.0022 12 6 6.1586 -2.6428 -1.1832 13 7 7.4541 -2.6373 -1.2670 14 6 8.2385 -2.6369 -0.1595 15 6 9.6309 -2.6369 -0.2500 16 6 10.3906 -2.6370 0.9008 17 9 11.7387 -2.6375 0.8114 18 6 9.7834 -2.6362 2.1551 19 9 10.5468 -2.6368 3.2697 20 6 8.4095 -2.6359 2.2670 21 6 7.6261 -2.6358 1.1138 22 6 6.1576 -2.6364 1.1730 23 8 5.5679 -2.6365 2.2379 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 -0.8911 26 1 3.8751 -0.6805 0.8889 27 1 3.6583 -3.1503 0.8892 28 1 3.6577 -3.1507 -0.8908 29 1 5.5859 -2.6479 -2.0988 30 1 10.1116 -2.6368 -1.2172 31 1 7.9432 -2.6348 3.2412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128985610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:45 Heat of formation + Delta-G solvation = -94.506590 kcal Electronic energy + Delta-G solvation = -20813.478909 eV Core-core repulsion = 17116.271360 eV Total energy + Delta-G solvation = -3697.207549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.69815 -49.76256 -42.77292 -39.64112 -38.64803 -36.14751 -34.78474 -32.85878 -31.84950 -30.94223 -27.56872 -25.98982 -25.12712 -23.67299 -22.79581 -20.56034 -20.19858 -19.32043 -18.77191 -17.93859 -17.63961 -17.48786 -17.18782 -16.93574 -16.25452 -16.17180 -15.82495 -15.39247 -15.33436 -15.08290 -14.82814 -14.67744 -14.38816 -14.34908 -13.90042 -13.21673 -13.03291 -12.92462 -12.31681 -12.09540 -11.88159 -11.63316 -11.45336 -11.15375 -10.98879 -10.79662 -10.31909 -9.26454 -8.32465 -6.37303 -0.89528 -0.67646 0.88816 1.26023 1.31927 1.34848 1.36991 1.45188 2.31986 2.39489 2.58488 2.74886 2.97004 3.03571 3.14158 3.33099 3.75868 3.84753 3.98943 4.04655 4.34864 4.36577 4.43896 4.60545 4.67449 4.69999 5.04574 5.13624 5.25917 5.40483 5.53156 5.57310 6.18943 6.46901 6.68782 6.71025 7.27880 8.83331 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.004136 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.085855 B = 6768.338220 C = 6921.245382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.255 1.255 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.050 0.950 9 C -0.019 4.019 10 C 0.115 3.885 11 N -0.539 5.539 12 C 0.404 3.596 13 N -0.537 5.537 14 C 0.179 3.821 15 C -0.111 4.111 16 C 0.124 3.876 17 F -0.118 7.118 18 C 0.038 3.962 19 F -0.129 7.129 20 C -0.045 4.045 21 C -0.203 4.203 22 C 0.537 3.463 23 O -0.539 6.539 24 H 0.267 0.733 25 H 0.039 0.961 26 H 0.001 0.999 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.252 0.748 30 H 0.189 0.811 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.755 -5.942 -3.774 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.179 1.179 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.068 0.932 9 C -0.057 4.057 10 C -0.005 4.005 11 N -0.258 5.258 12 C 0.120 3.880 13 N -0.258 5.258 14 C 0.068 3.932 15 C -0.131 4.131 16 C 0.102 3.898 17 F -0.097 7.097 18 C 0.018 3.982 19 F -0.107 7.107 20 C -0.065 4.065 21 C -0.209 4.209 22 C 0.330 3.670 23 O -0.415 6.415 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.019 0.981 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.267 0.733 30 H 0.206 0.794 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 20.838 -5.838 -3.708 21.956 hybrid contribution -0.312 0.865 1.487 1.748 sum 20.527 -4.973 -2.221 21.237 Atomic orbital electron populations 1.70024 1.08030 1.28195 1.52023 1.25801 0.95418 1.02893 0.94135 0.85826 0.78918 0.79315 0.79559 1.17890 1.21377 1.18874 1.21175 0.90771 0.93812 1.50865 0.93164 1.19795 0.95086 0.93842 0.97011 1.22047 0.73469 0.99318 1.05695 1.47030 1.11153 1.60500 1.07159 1.25885 0.89160 0.82804 0.90184 1.68824 1.03136 1.25947 1.27919 1.18696 0.93982 0.93187 0.87329 1.20760 0.90519 1.02812 0.99010 1.17608 0.77807 1.01898 0.92485 1.91575 1.27827 1.93392 1.96880 1.17398 0.88660 1.10273 0.81907 1.91537 1.74949 1.94348 1.49903 1.20816 0.90610 0.95132 0.99963 1.20423 0.92316 1.12722 0.95445 1.18563 0.87857 0.76694 0.83878 1.90884 1.71246 1.49602 1.29739 0.92348 0.94232 0.98096 0.90537 0.84996 0.73273 0.79419 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.26 13.96 21.45 0.30 -55.96 16 2 C 0.02 0.87 5.47 84.66 0.46 1.33 16 3 Si 0.94 42.51 27.47 68.60 1.88 44.39 16 4 H -0.25 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.72 6.54 99.48 0.65 -11.07 16 7 C -0.53 -27.70 9.66 25.60 0.25 -27.45 16 8 H 0.05 2.84 7.99 -2.91 -0.02 2.81 16 9 C -0.02 -0.80 4.37 29.85 0.13 -0.67 16 10 C 0.12 3.69 5.30 86.38 0.46 4.14 16 11 N -0.54 -15.00 2.61 -647.91 -1.69 -16.68 16 12 C 0.40 8.05 11.41 180.18 2.06 10.11 16 13 N -0.54 -11.39 10.37 -191.91 -1.99 -13.38 16 14 C 0.18 4.11 6.63 39.61 0.26 4.37 16 15 C -0.11 -2.05 9.99 22.50 0.22 -1.82 16 16 C 0.12 2.48 7.29 22.46 0.16 2.65 16 17 F -0.12 -2.35 17.16 44.97 0.77 -1.58 16 18 C 0.04 0.87 7.29 22.44 0.16 1.03 16 19 F -0.13 -3.05 17.16 44.97 0.77 -2.28 16 20 C -0.04 -1.12 9.64 22.46 0.22 -0.91 16 21 C -0.20 -5.48 5.90 -19.96 -0.12 -5.60 16 22 C 0.54 17.49 7.66 86.44 0.66 18.16 16 23 O -0.54 -21.65 16.31 -4.47 -0.07 -21.72 16 24 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 25 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 26 H 0.00 0.03 7.20 -2.39 -0.02 0.01 16 27 H 0.08 2.79 7.46 -2.39 -0.02 2.78 16 28 H 0.13 3.22 7.99 -2.39 -0.02 3.20 16 29 H 0.25 2.59 7.98 -2.91 -0.02 2.57 16 30 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.16 3.92 7.83 -2.91 -0.02 3.90 16 Total: -1.00 -67.90 286.77 6.03 -61.86 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 1.13 Total: 0.01 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 4.93 Total: 5.35 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -3.38 Total: -86.02 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.54 Total: -3.86 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Total: -67.90 6.03 -61.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128985610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.643 kcal (2) G-P(sol) polarization free energy of solvation -67.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds