Wall clock time and date at job start Tue Mar 31 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99864 * 2 1 4 4 O 1.20827 * 120.00297 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99696 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46760 * 179.97438 * 5 3 2 7 7 C 1.36937 * 120.00025 * 269.99809 * 6 5 3 8 8 H 1.08000 * 120.00208 * 187.79167 * 7 6 5 9 9 C 1.38812 * 119.99853 * 7.78674 * 7 6 5 10 10 N 1.31617 * 119.99942 * 25.79390 * 9 7 6 11 11 Si 1.86805 * 119.99951 * 205.78941 * 9 7 6 12 12 H 1.48501 * 109.46916 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47166 * 120.00233 * 11 9 7 14 14 H 1.48502 * 109.47019 * 240.00327 * 11 9 7 15 15 C 1.46500 * 119.99969 * 90.00485 * 6 5 3 16 16 C 1.50704 * 109.46632 * 271.70302 * 15 6 5 17 17 C 1.33717 * 124.51184 * 90.02625 * 16 15 6 18 18 C 1.37607 * 115.09414 * 179.97438 * 17 16 15 19 19 C 1.36628 * 113.27062 * 359.97438 * 18 17 16 20 20 C 1.43205 * 125.45466 * 179.97438 * 19 18 17 21 21 N 7.91599 * 72.11432 * 19.29633 * 2 1 3 22 22 S 1.70608 * 124.51054 * 270.02149 * 16 15 6 23 23 H 1.09004 * 109.47711 * 59.99406 * 1 2 3 24 24 H 1.09002 * 109.47512 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46986 * 299.99530 * 1 2 3 26 26 H 1.09003 * 109.46859 * 60.00148 * 5 3 2 27 27 H 1.09001 * 109.47321 * 299.99776 * 5 3 2 28 28 H 0.97003 * 119.99893 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47312 * 151.70573 * 15 6 5 30 30 H 1.08999 * 109.46937 * 31.69799 * 15 6 5 31 31 H 1.08000 * 122.44936 * 359.97438 * 17 16 15 32 32 H 1.08004 * 123.36088 * 180.27026 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.1753 3.3360 -1.1872 8 1 4.6010 4.3286 -1.1920 9 6 3.8247 2.7255 -2.3835 10 7 2.8864 1.8027 -2.4011 11 14 4.6844 3.2138 -3.9685 12 1 5.6930 4.2651 -3.6809 13 1 5.3598 2.0266 -4.5513 14 1 3.6841 3.7375 -4.9331 15 6 4.1899 3.3824 1.2674 16 6 2.8889 3.9909 1.7239 17 6 1.9964 3.3732 2.5048 18 6 0.8735 4.1102 2.8038 19 6 0.8787 5.3547 2.2399 20 6 -0.1565 6.3344 2.3796 21 7 -0.9792 7.1102 2.4894 22 16 2.3589 5.5597 1.3133 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.9556 0.7809 -0.8909 27 1 3.9564 0.7806 0.8892 28 1 2.6411 1.3763 -3.2372 29 1 4.9306 4.1701 1.1291 30 1 4.5449 2.6776 2.0192 31 1 2.1459 2.3692 2.8738 32 1 0.0706 3.7435 3.4262 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129160356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:05 Heat of formation + Delta-G solvation = 11.431879 kcal Electronic energy + Delta-G solvation = -19852.070024 eV Core-core repulsion = 16713.296698 eV Total energy + Delta-G solvation = -3138.773326 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.03366 -37.74369 -36.37818 -35.64270 -34.57940 -32.01550 -29.91966 -28.16715 -26.40542 -25.98727 -23.63654 -21.71290 -20.35077 -19.79962 -17.81620 -16.96871 -16.24957 -15.72946 -15.63539 -15.17843 -14.82235 -14.28583 -13.91946 -13.67492 -13.44797 -13.14094 -12.70041 -12.48708 -12.26630 -12.19626 -11.85654 -11.67343 -11.44108 -11.10923 -11.02571 -10.86313 -10.57509 -10.29531 -10.27473 -10.12223 -9.62332 -9.20870 -8.68035 -8.09724 -7.92209 -7.36679 -6.15801 -3.37931 1.03610 1.78981 2.54237 2.96578 3.24857 3.28609 3.34203 3.35940 3.72640 3.83426 3.99886 4.32408 4.40366 5.07096 5.17712 5.47143 5.76571 5.79207 5.83794 5.87806 5.96142 6.06453 6.18851 6.22608 6.46939 6.55731 6.74394 6.91482 6.95104 7.48867 7.73109 7.78289 7.90854 8.77456 9.31702 9.49124 9.85445 10.93726 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.007513 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.916230 B = 3726.030742 C = 4557.988195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.384 6.384 3 C 0.461 3.539 4 O -0.491 6.491 5 C 0.183 3.817 6 N -0.549 5.549 7 C -0.255 4.255 8 H 0.086 0.914 9 C 0.007 3.993 10 N -0.889 5.889 11 Si 0.911 3.089 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.291 1.291 15 C 0.197 3.803 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.042 4.042 19 C -0.216 4.216 20 C 0.300 3.700 21 N -0.446 5.446 22 S 0.244 5.756 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.261 0.739 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 -2.280 7.764 8.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.302 6.302 3 C 0.300 3.700 4 O -0.374 6.374 5 C 0.054 3.946 6 N -0.266 5.266 7 C -0.384 4.384 8 H 0.104 0.896 9 C -0.193 4.193 10 N -0.532 5.532 11 Si 0.740 3.260 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.218 1.218 15 C 0.068 3.932 16 C -0.286 4.286 17 C -0.191 4.191 18 C -0.079 4.079 19 C -0.338 4.338 20 C -0.014 4.014 21 N -0.125 5.125 22 S 0.511 5.489 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.134 0.866 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.146 0.854 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.429 0.312 6.869 7.023 hybrid contribution -0.840 -1.380 -0.397 1.664 sum 0.589 -1.068 6.472 6.586 Atomic orbital electron populations 1.22819 0.79835 1.01149 1.01211 1.86530 1.20902 1.36866 1.85894 1.25302 0.93321 0.80408 0.70983 1.90525 1.66374 1.36023 1.44522 1.20634 0.85978 0.86124 1.01872 1.44828 1.73619 1.06880 1.01270 1.19424 1.34735 1.01805 0.82460 0.89578 1.24836 0.96999 0.99115 0.98324 1.69885 1.26929 1.29576 1.26812 0.86088 0.79275 0.77970 0.82672 1.19959 1.21194 1.21764 1.19899 0.89535 0.95440 0.88294 1.25699 1.05885 0.98322 0.98658 1.19465 0.94427 1.01147 1.04035 1.20428 0.98119 0.91161 0.98218 1.20219 1.01095 0.97335 1.15109 1.24532 0.92004 0.92192 0.92672 1.81203 1.10509 1.10262 1.10521 1.82916 1.08463 1.11765 1.45710 0.92989 0.90335 0.93640 0.86571 0.92687 0.92868 0.91088 0.91223 0.85367 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -7.81 10.57 -39.25 -0.41 -8.22 16 3 C 0.46 10.16 5.92 36.01 0.21 10.37 16 4 O -0.49 -12.00 13.21 -18.75 -0.25 -12.24 16 5 C 0.18 3.77 5.59 -5.19 -0.03 3.74 16 6 N -0.55 -11.53 2.08 -175.98 -0.37 -11.90 16 7 C -0.26 -6.03 9.69 -15.06 -0.15 -6.18 16 8 H 0.09 2.00 7.92 -52.49 -0.42 1.58 16 9 C 0.01 0.17 4.88 -17.43 -0.09 0.09 16 10 N -0.89 -23.08 9.02 55.49 0.50 -22.58 16 11 Si 0.91 19.94 29.63 -169.99 -5.04 14.90 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 13 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.20 3.35 6.14 -5.19 -0.03 3.31 16 16 C -0.16 -2.77 4.80 -35.89 -0.17 -2.94 16 17 C -0.16 -2.65 8.33 -41.40 -0.34 -2.99 16 18 C -0.04 -0.67 10.24 -40.39 -0.41 -1.08 16 19 C -0.22 -3.68 6.32 -38.24 -0.24 -3.92 16 20 C 0.30 5.29 15.83 -22.47 -0.36 4.93 16 21 N -0.45 -8.33 18.54 41.84 0.78 -7.56 16 22 S 0.24 4.17 23.01 -107.50 -2.47 1.70 16 23 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.12 2.63 6.27 -51.93 -0.33 2.31 16 27 H 0.06 0.94 7.91 -51.93 -0.41 0.53 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.07 1.12 8.01 -51.93 -0.42 0.71 16 30 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 31 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 302.53 15.07 4.56 4.56 Total: -1.00 -28.74 302.53 -6.47 -35.22 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -3.23 Total: -1.04 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.54 Total: 7.17 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.91 Total: -42.03 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.66 Total: -20.47 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.04 Total: 14.90 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -2.47 Total: 1.70 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.74 -6.47 -35.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129160356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.647 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds