Wall clock time and date at job start Tue Mar 31 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99864 * 2 1 4 4 O 1.20827 * 120.00297 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99696 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46760 * 179.97438 * 5 3 2 7 7 C 1.36937 * 120.00025 * 269.99809 * 6 5 3 8 8 H 1.08000 * 120.00208 * 187.79167 * 7 6 5 9 9 C 1.38812 * 119.99853 * 7.78674 * 7 6 5 10 10 N 1.31617 * 119.99942 * 25.79390 * 9 7 6 11 11 Si 1.86805 * 119.99951 * 205.78941 * 9 7 6 12 12 H 1.48501 * 109.46916 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47166 * 120.00233 * 11 9 7 14 14 H 1.48502 * 109.47019 * 240.00327 * 11 9 7 15 15 C 1.46500 * 119.99969 * 90.00485 * 6 5 3 16 16 C 1.50704 * 109.46632 * 271.70302 * 15 6 5 17 17 C 1.33717 * 124.51184 * 90.02625 * 16 15 6 18 18 C 1.37607 * 115.09414 * 179.97438 * 17 16 15 19 19 C 1.36628 * 113.27062 * 359.97438 * 18 17 16 20 20 C 1.43205 * 125.45466 * 179.97438 * 19 18 17 21 21 N 7.91599 * 72.11432 * 19.29633 * 2 1 3 22 22 S 1.70608 * 124.51054 * 270.02149 * 16 15 6 23 23 H 1.09004 * 109.47711 * 59.99406 * 1 2 3 24 24 H 1.09002 * 109.47512 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46986 * 299.99530 * 1 2 3 26 26 H 1.09003 * 109.46859 * 60.00148 * 5 3 2 27 27 H 1.09001 * 109.47321 * 299.99776 * 5 3 2 28 28 H 0.97003 * 119.99893 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47312 * 151.70573 * 15 6 5 30 30 H 1.08999 * 109.46937 * 31.69799 * 15 6 5 31 31 H 1.08000 * 122.44936 * 359.97438 * 17 16 15 32 32 H 1.08004 * 123.36088 * 180.27026 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.1753 3.3360 -1.1872 8 1 4.6010 4.3286 -1.1920 9 6 3.8247 2.7255 -2.3835 10 7 2.8864 1.8027 -2.4011 11 14 4.6844 3.2138 -3.9685 12 1 5.6930 4.2651 -3.6809 13 1 5.3598 2.0266 -4.5513 14 1 3.6841 3.7375 -4.9331 15 6 4.1899 3.3824 1.2674 16 6 2.8889 3.9909 1.7239 17 6 1.9964 3.3732 2.5048 18 6 0.8735 4.1102 2.8038 19 6 0.8787 5.3547 2.2399 20 6 -0.1565 6.3344 2.3796 21 7 -0.9792 7.1102 2.4894 22 16 2.3589 5.5597 1.3133 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.9556 0.7809 -0.8909 27 1 3.9564 0.7806 0.8892 28 1 2.6411 1.3763 -3.2372 29 1 4.9306 4.1701 1.1291 30 1 4.5449 2.6776 2.0192 31 1 2.1459 2.3692 2.8738 32 1 0.0706 3.7435 3.4262 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129160356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:05 Heat of formation + Delta-G solvation = -3.220399 kcal Electronic energy + Delta-G solvation = -19852.705394 eV Core-core repulsion = 16713.296698 eV Total energy + Delta-G solvation = -3139.408696 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64633 -39.10895 -37.87441 -37.12536 -36.23570 -33.65393 -31.41067 -29.69620 -27.80470 -27.55871 -25.11435 -23.21382 -21.72004 -21.39574 -19.25623 -18.57964 -17.86604 -17.25127 -17.07581 -16.76841 -16.43533 -15.65586 -15.53188 -15.17442 -14.93703 -14.54789 -14.12760 -13.90372 -13.79441 -13.60594 -13.34066 -13.24639 -12.88525 -12.72573 -12.57274 -12.37058 -12.08774 -11.96548 -11.85567 -11.59881 -11.21362 -10.89647 -10.43400 -9.49073 -9.25726 -9.02878 -7.95883 -5.19040 -0.29546 0.43005 1.20651 1.49506 1.55237 1.61958 1.65691 1.89588 2.20294 2.35004 2.44997 2.62772 3.01786 3.27979 3.65320 4.16303 4.47321 4.49451 4.53215 4.58367 4.61444 4.73410 4.76934 4.94164 5.07512 5.17162 5.28967 5.42943 5.64282 5.68552 6.12069 6.20653 6.38090 7.02701 7.63707 7.84493 8.13796 9.12086 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.007513 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.916230 B = 3726.030742 C = 4557.988195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.390 6.390 3 C 0.462 3.538 4 O -0.520 6.520 5 C 0.183 3.817 6 N -0.563 5.563 7 C -0.248 4.248 8 H 0.086 0.914 9 C -0.041 4.041 10 N -0.918 5.918 11 Si 0.958 3.042 12 H -0.265 1.265 13 H -0.289 1.289 14 H -0.310 1.310 15 C 0.194 3.806 16 C -0.167 4.167 17 C -0.156 4.156 18 C -0.036 4.036 19 C -0.223 4.223 20 C 0.311 3.689 21 N -0.466 5.466 22 S 0.233 5.767 23 H 0.028 0.972 24 H 0.118 0.882 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.248 0.752 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 -2.799 9.525 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.308 6.308 3 C 0.303 3.697 4 O -0.406 6.406 5 C 0.054 3.946 6 N -0.280 5.280 7 C -0.378 4.378 8 H 0.103 0.897 9 C -0.237 4.237 10 N -0.564 5.564 11 Si 0.788 3.212 12 H -0.189 1.189 13 H -0.216 1.216 14 H -0.239 1.239 15 C 0.066 3.934 16 C -0.292 4.292 17 C -0.186 4.186 18 C -0.073 4.073 19 C -0.344 4.344 20 C -0.002 4.002 21 N -0.146 5.146 22 S 0.501 5.499 23 H 0.047 0.953 24 H 0.136 0.864 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.163 0.837 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.747 -0.189 8.657 8.834 hybrid contribution -0.972 -1.182 -0.753 1.706 sum 0.775 -1.371 7.905 8.060 Atomic orbital electron populations 1.23034 0.78052 1.03552 1.00428 1.86502 1.22667 1.36095 1.85514 1.25530 0.93850 0.80308 0.70000 1.90498 1.67132 1.36959 1.46037 1.20606 0.85324 0.86219 1.02473 1.44731 1.74214 1.07311 1.01781 1.19573 1.33341 1.01310 0.83607 0.89670 1.25314 0.98028 1.00037 1.00292 1.70016 1.28748 1.31467 1.26129 0.85355 0.78154 0.77528 0.80180 1.18918 1.21569 1.23885 1.20098 0.89462 0.96369 0.87438 1.25710 1.05785 0.98495 0.99193 1.19719 0.93985 1.01674 1.03205 1.20769 0.98597 0.90385 0.97557 1.20315 1.00746 0.97733 1.15647 1.24576 0.91735 0.91876 0.92051 1.81215 1.11211 1.10823 1.11322 1.82972 1.08815 1.12304 1.45821 0.95301 0.86396 0.92848 0.88979 0.88845 0.94206 0.90135 0.87917 0.83698 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 10.56 113.37 1.20 2.61 16 2 O -0.39 -15.28 10.57 -51.39 -0.54 -15.82 16 3 C 0.46 19.80 5.92 71.24 0.42 20.22 16 4 O -0.52 -24.88 13.21 21.96 0.29 -24.59 16 5 C 0.18 7.26 5.59 85.63 0.48 7.73 16 6 N -0.56 -22.71 2.08 -710.67 -1.48 -24.19 16 7 C -0.25 -11.58 9.69 84.03 0.81 -10.77 16 8 H 0.09 3.89 7.92 -2.91 -0.02 3.87 16 9 C -0.04 -2.03 4.88 84.86 0.41 -1.61 16 10 N -0.92 -48.43 9.02 21.65 0.20 -48.23 16 11 Si 0.96 41.62 29.63 68.60 2.03 43.65 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 13 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 15 C 0.19 6.05 6.14 85.63 0.53 6.57 16 16 C -0.17 -5.37 4.80 24.66 0.12 -5.25 16 17 C -0.16 -4.64 8.33 21.09 0.18 -4.46 16 18 C -0.04 -1.03 10.24 21.74 0.22 -0.81 16 19 C -0.22 -7.16 6.32 23.14 0.15 -7.02 16 20 C 0.31 10.51 15.83 88.33 1.40 11.91 16 21 N -0.47 -16.88 18.54 19.01 0.35 -16.53 16 22 S 0.23 7.62 23.01 -56.49 -1.30 6.32 16 23 H 0.03 1.05 8.13 -2.38 -0.02 1.03 16 24 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.05 1.63 8.13 -2.38 -0.02 1.61 16 26 H 0.09 4.15 6.27 -2.39 -0.01 4.14 16 27 H 0.09 2.91 7.91 -2.39 -0.02 2.89 16 28 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 29 H 0.08 2.35 8.01 -2.39 -0.02 2.33 16 30 H 0.10 2.52 7.92 -2.39 -0.02 2.51 16 31 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -61.30 302.53 6.61 -54.69 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.15 Total: 5.56 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.91 Total: 19.15 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -0.93 Total: -88.95 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.25 Total: -40.41 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 7.62 SS G_CDS: -1.30 Total: 6.32 kcal Total: -61.30 6.61 -54.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129160356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.471 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds