Wall clock time and date at job start Tue Mar 31 2020 02:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38246 * 119.83969 * 2 1 4 4 C 1.38240 * 120.15240 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.08797 * 180.02562 * 4 3 2 6 6 C 1.39915 * 119.82810 * 0.30428 * 4 3 2 7 7 C 1.47581 * 120.16582 * 179.69979 * 6 4 3 8 8 O 1.21614 * 119.99634 * 304.49368 * 7 6 4 9 9 N 1.34773 * 120.00702 * 124.49684 * 7 6 4 10 10 C 1.36888 * 120.00103 * 184.68678 * 9 7 6 11 11 H 1.08002 * 120.00128 * 319.16992 * 10 9 7 12 12 C 1.39041 * 119.99699 * 139.17419 * 10 9 7 13 13 N 1.31370 * 119.99873 * 161.18404 * 12 10 9 14 14 Si 1.86798 * 120.00083 * 341.17456 * 12 10 9 15 15 H 1.48500 * 109.47184 * 92.01546 * 14 12 10 16 16 H 1.48504 * 109.47097 * 212.01838 * 14 12 10 17 17 H 1.48500 * 109.46973 * 332.01785 * 14 12 10 18 18 C 1.46502 * 119.99770 * 4.68602 * 9 7 6 19 19 C 1.47198 * 109.47297 * 94.20905 * 18 9 7 20 20 N 5.79829 * 134.92096 * 164.15444 * 2 1 3 21 21 C 1.39684 * 119.67673 * 359.44246 * 6 4 3 22 22 C 1.38094 * 119.84168 * 0.53297 * 21 6 4 23 23 F 1.35102 * 119.91510 * 179.71836 * 22 21 6 24 24 H 1.09004 * 109.46959 * 89.99417 * 1 2 3 25 25 H 1.08994 * 109.47792 * 209.99805 * 1 2 3 26 26 H 1.08997 * 109.46821 * 330.00619 * 1 2 3 27 27 H 1.07995 * 119.92507 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00351 * 180.02562 * 13 12 10 29 29 H 1.09003 * 109.47140 * 214.21150 * 18 9 7 30 30 H 1.09007 * 109.46785 * 334.20881 * 18 9 7 31 31 H 1.08002 * 120.08313 * 180.25613 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1992 0.0000 4 6 3.5773 1.2067 0.0005 5 9 4.2482 2.3793 0.0011 6 6 4.2798 -0.0032 -0.0054 7 6 5.7556 -0.0039 -0.0115 8 8 6.3603 0.5945 -0.8807 9 7 6.4334 -0.6675 0.9459 10 6 7.7991 -0.5894 0.9968 11 1 8.3761 -0.6202 0.0843 12 6 8.4433 -0.4706 2.2231 13 7 9.7202 -0.7622 2.3253 14 14 7.4934 0.1040 3.7254 15 1 6.9552 -1.0744 4.4513 16 1 8.3991 0.8665 4.6220 17 1 6.3708 0.9767 3.2973 18 6 5.7084 -1.4724 1.9322 19 6 5.6478 -2.8705 1.4755 20 7 5.6014 -3.9497 1.1210 21 6 3.5776 -1.2107 0.0000 22 6 2.1967 -1.2026 0.0000 23 9 1.5160 -2.3696 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5137 26 1 -0.3633 0.8900 0.5137 27 1 1.6511 2.1322 0.0004 28 1 10.1696 -0.6797 3.1809 29 1 6.2256 -1.4253 2.8905 30 1 4.6966 -1.0831 2.0458 31 1 4.1133 -2.1485 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135221168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:58 Heat of formation + Delta-G solvation = -49.000986 kcal Electronic energy + Delta-G solvation = -21686.560891 eV Core-core repulsion = 17991.326613 eV Total energy + Delta-G solvation = -3695.234278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.99674 -48.75909 -39.90404 -38.19085 -36.41098 -34.83791 -33.19162 -32.18288 -30.27602 -28.01682 -27.88926 -25.12366 -23.20714 -22.22378 -19.99697 -18.76391 -17.61661 -17.27901 -17.12868 -16.66239 -16.25556 -15.75235 -15.57300 -15.23851 -14.55276 -14.39029 -14.19644 -13.78937 -13.53645 -13.43033 -13.30213 -12.98982 -12.75013 -12.59138 -12.37438 -12.13122 -12.05483 -11.74876 -11.54958 -11.28047 -11.05705 -10.57150 -10.15042 -9.46447 -9.13220 -8.98227 -8.53111 -8.20850 -6.62143 -4.28007 0.68969 0.89533 2.79734 2.84064 2.97339 3.05419 3.12617 3.14915 3.42759 3.88339 3.93566 4.08309 4.21026 4.30580 4.50330 4.55753 4.74138 4.94810 5.05224 5.22815 5.29763 5.32712 5.44891 5.56635 5.69489 5.74811 5.92918 5.93539 6.02793 6.65871 7.21913 7.83600 7.94934 8.15242 8.61464 8.96982 9.31920 10.48254 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.007077 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.492491 B = 3955.564775 C = 4581.830704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.131 4.131 4 C 0.137 3.863 5 F -0.118 7.118 6 C -0.121 4.121 7 C 0.513 3.487 8 O -0.525 6.525 9 N -0.449 5.449 10 C -0.324 4.324 11 H 0.114 0.886 12 C 0.067 3.933 13 N -0.846 5.846 14 Si 0.860 3.140 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.253 1.253 18 C 0.172 3.828 19 C 0.205 3.795 20 N -0.430 5.430 21 C -0.109 4.109 22 C 0.086 3.914 23 F -0.132 7.132 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.150 0.850 28 H 0.280 0.720 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.584 2.925 1.462 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.150 4.150 4 C 0.116 3.884 5 F -0.096 7.096 6 C -0.125 4.125 7 C 0.301 3.699 8 O -0.403 6.403 9 N -0.171 5.171 10 C -0.451 4.451 11 H 0.131 0.869 12 C -0.142 4.142 13 N -0.480 5.480 14 Si 0.686 3.314 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.177 1.177 18 C 0.046 3.954 19 C -0.114 4.114 20 N -0.109 5.109 21 C -0.129 4.129 22 C 0.066 3.934 23 F -0.111 7.111 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.088 1.640 0.596 17.177 hybrid contribution -0.145 0.549 1.076 1.217 sum -17.233 2.189 1.672 17.452 Atomic orbital electron populations 1.20765 0.89307 1.03732 1.03224 1.19783 0.97292 0.90862 1.00812 1.20793 0.91568 0.98889 1.03702 1.17544 0.89482 0.80819 1.00566 1.91579 1.80478 1.44426 1.93123 1.20269 0.96314 0.92000 1.03946 1.17876 0.84659 0.81716 0.85628 1.90742 1.68701 1.44677 1.36155 1.43482 1.07122 1.39356 1.27122 1.19083 0.77585 1.52099 0.96338 0.86857 1.25424 0.95550 0.94963 0.98240 1.69674 1.10167 1.41386 1.26798 0.87190 0.81355 0.79993 0.82823 1.19280 1.20157 1.17701 1.19652 1.00049 0.80493 0.95254 1.29822 0.92596 0.95224 0.93766 1.81133 1.09097 1.12486 1.08169 1.21306 0.92378 0.98701 1.00513 1.17286 0.89329 0.81340 1.05430 1.91504 1.79708 1.45887 1.93999 0.90321 0.90723 0.90538 0.83256 0.90946 0.87030 0.87072 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.82 36.01 0.35 -0.52 16 2 C -0.09 -0.96 5.89 -104.47 -0.62 -1.58 16 3 C -0.13 -1.52 9.66 -39.58 -0.38 -1.90 16 4 C 0.14 2.16 7.28 -38.95 -0.28 1.87 16 5 F -0.12 -2.09 16.70 2.25 0.04 -2.05 16 6 C -0.12 -2.14 4.68 -104.92 -0.49 -2.64 16 7 C 0.51 11.58 6.82 -12.45 -0.08 11.49 16 8 O -0.52 -13.82 16.81 5.27 0.09 -13.73 16 9 N -0.45 -10.21 2.09 -119.10 -0.25 -10.46 16 10 C -0.32 -8.59 9.31 -15.00 -0.14 -8.73 16 11 H 0.11 3.40 7.93 -52.49 -0.42 2.99 16 12 C 0.07 1.72 5.36 -17.45 -0.09 1.63 16 13 N -0.85 -22.98 13.95 55.50 0.77 -22.20 16 14 Si 0.86 18.12 25.08 -169.99 -4.26 13.86 16 15 H -0.27 -5.04 6.58 56.52 0.37 -4.67 16 16 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.25 -5.15 7.11 56.52 0.40 -4.75 16 18 C 0.17 3.21 4.36 -6.83 -0.03 3.18 16 19 C 0.20 3.93 13.25 -20.73 -0.27 3.66 16 20 N -0.43 -8.72 18.54 42.19 0.78 -7.94 16 21 C -0.11 -1.70 7.70 -39.09 -0.30 -2.01 16 22 C 0.09 1.14 7.23 -39.49 -0.29 0.86 16 23 F -0.13 -1.77 16.45 2.25 0.04 -1.73 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.57 7.62 -51.93 -0.40 0.17 16 26 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.11 2.09 3.15 -51.93 -0.16 1.93 16 30 H 0.11 1.67 5.82 -51.92 -0.30 1.37 16 31 H 0.14 2.38 5.44 -52.49 -0.29 2.09 16 LS Contribution 284.33 15.07 4.28 4.28 Total: -1.00 -30.24 284.33 -3.13 -33.37 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -1.99 Total: 1.29 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.63 Total: 5.31 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 1.31 Total: -40.60 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.07 Total: -3.78 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.26 Total: 13.86 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.24 -3.13 -33.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135221168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.633 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds