Wall clock time and date at job start Tue Mar 31 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38246 * 119.83969 * 2 1 4 4 C 1.38240 * 120.15240 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.08797 * 180.02562 * 4 3 2 6 6 C 1.39915 * 119.82810 * 0.30428 * 4 3 2 7 7 C 1.47581 * 120.16582 * 179.69979 * 6 4 3 8 8 O 1.21614 * 119.99634 * 304.49368 * 7 6 4 9 9 N 1.34773 * 120.00702 * 124.49684 * 7 6 4 10 10 C 1.36888 * 120.00103 * 184.68678 * 9 7 6 11 11 H 1.08002 * 120.00128 * 319.16992 * 10 9 7 12 12 C 1.39041 * 119.99699 * 139.17419 * 10 9 7 13 13 N 1.31370 * 119.99873 * 161.18404 * 12 10 9 14 14 Si 1.86798 * 120.00083 * 341.17456 * 12 10 9 15 15 H 1.48500 * 109.47184 * 92.01546 * 14 12 10 16 16 H 1.48504 * 109.47097 * 212.01838 * 14 12 10 17 17 H 1.48500 * 109.46973 * 332.01785 * 14 12 10 18 18 C 1.46502 * 119.99770 * 4.68602 * 9 7 6 19 19 C 1.47198 * 109.47297 * 94.20905 * 18 9 7 20 20 N 5.79829 * 134.92096 * 164.15444 * 2 1 3 21 21 C 1.39684 * 119.67673 * 359.44246 * 6 4 3 22 22 C 1.38094 * 119.84168 * 0.53297 * 21 6 4 23 23 F 1.35102 * 119.91510 * 179.71836 * 22 21 6 24 24 H 1.09004 * 109.46959 * 89.99417 * 1 2 3 25 25 H 1.08994 * 109.47792 * 209.99805 * 1 2 3 26 26 H 1.08997 * 109.46821 * 330.00619 * 1 2 3 27 27 H 1.07995 * 119.92507 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00351 * 180.02562 * 13 12 10 29 29 H 1.09003 * 109.47140 * 214.21150 * 18 9 7 30 30 H 1.09007 * 109.46785 * 334.20881 * 18 9 7 31 31 H 1.08002 * 120.08313 * 180.25613 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1992 0.0000 4 6 3.5773 1.2067 0.0005 5 9 4.2482 2.3793 0.0011 6 6 4.2798 -0.0032 -0.0054 7 6 5.7556 -0.0039 -0.0115 8 8 6.3603 0.5945 -0.8807 9 7 6.4334 -0.6675 0.9459 10 6 7.7991 -0.5894 0.9968 11 1 8.3761 -0.6202 0.0843 12 6 8.4433 -0.4706 2.2231 13 7 9.7202 -0.7622 2.3253 14 14 7.4934 0.1040 3.7254 15 1 6.9552 -1.0744 4.4513 16 1 8.3991 0.8665 4.6220 17 1 6.3708 0.9767 3.2973 18 6 5.7084 -1.4724 1.9322 19 6 5.6478 -2.8705 1.4755 20 7 5.6014 -3.9497 1.1210 21 6 3.5776 -1.2107 0.0000 22 6 2.1967 -1.2026 0.0000 23 9 1.5160 -2.3696 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5137 26 1 -0.3633 0.8900 0.5137 27 1 1.6511 2.1322 0.0004 28 1 10.1696 -0.6797 3.1809 29 1 6.2256 -1.4253 2.8905 30 1 4.6966 -1.0831 2.0458 31 1 4.1133 -2.1485 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135221168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:57 Heat of formation + Delta-G solvation = -68.589992 kcal Electronic energy + Delta-G solvation = -21687.410334 eV Core-core repulsion = 17991.326613 eV Total energy + Delta-G solvation = -3696.083721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.05124 -50.03285 -41.44219 -39.49212 -38.10154 -36.61407 -34.57830 -33.79937 -31.37029 -29.60881 -29.09383 -26.78183 -24.29461 -23.46909 -21.51068 -20.51330 -19.02505 -18.63105 -18.32198 -18.19396 -17.76056 -17.14064 -16.92615 -16.45440 -15.95982 -15.89210 -15.57811 -15.32050 -14.90099 -14.61783 -14.48149 -14.21499 -14.17414 -14.08495 -13.72861 -13.66191 -13.31608 -12.87114 -12.85332 -12.68902 -12.44194 -12.23738 -11.85070 -11.24586 -10.80438 -10.19444 -10.13408 -9.67229 -8.58328 -6.33862 -0.45976 -0.20022 1.15663 1.26958 1.29508 1.43476 1.56941 1.60139 2.12077 2.13706 2.43726 2.68637 2.93807 2.99893 3.03577 3.31947 3.53747 3.66355 3.87683 3.92307 4.05546 4.38998 4.49049 4.59955 4.77356 4.83622 4.87724 5.13518 5.21347 5.35437 5.62231 5.91047 6.24108 6.32045 6.68045 6.99273 7.47261 8.57313 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.007077 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.492491 B = 3955.564775 C = 4581.830704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.106 4.106 4 C 0.124 3.876 5 F -0.135 7.135 6 C -0.146 4.146 7 C 0.513 3.487 8 O -0.580 6.580 9 N -0.458 5.458 10 C -0.347 4.347 11 H 0.051 0.949 12 C 0.021 3.979 13 N -0.897 5.897 14 Si 0.923 3.077 15 H -0.221 1.221 16 H -0.276 1.276 17 H -0.239 1.239 18 C 0.174 3.826 19 C 0.216 3.784 20 N -0.450 5.450 21 C -0.111 4.111 22 C 0.088 3.912 23 F -0.130 7.130 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.193 0.807 28 H 0.286 0.714 29 H 0.119 0.881 30 H 0.155 0.845 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.407 3.685 3.353 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.124 4.124 4 C 0.103 3.897 5 F -0.113 7.113 6 C -0.151 4.151 7 C 0.303 3.697 8 O -0.461 6.461 9 N -0.179 5.179 10 C -0.475 4.475 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.532 5.532 14 Si 0.743 3.257 15 H -0.146 1.146 16 H -0.202 1.202 17 H -0.161 1.161 18 C 0.049 3.951 19 C -0.102 4.102 20 N -0.129 5.129 21 C -0.131 4.131 22 C 0.068 3.932 23 F -0.108 7.108 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.210 0.790 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.940 2.361 2.492 22.207 hybrid contribution 1.259 0.289 0.322 1.332 sum -20.681 2.651 2.814 21.039 Atomic orbital electron populations 1.20960 0.85954 1.05516 1.04746 1.20245 0.99350 0.89398 0.96972 1.21178 0.89410 1.00852 1.00989 1.17886 0.90992 0.79430 1.01349 1.91540 1.81204 1.45172 1.93392 1.19767 0.92925 0.93984 1.08382 1.18621 0.86930 0.80100 0.84044 1.90690 1.70691 1.46685 1.38055 1.43461 1.06028 1.40319 1.28115 1.18600 0.79511 1.54499 0.94860 0.93122 1.26261 0.96522 0.93962 1.01664 1.69796 1.12416 1.42745 1.28291 0.86212 0.80249 0.81117 0.78153 1.14557 1.20163 1.16148 1.19900 1.01827 0.79489 0.93925 1.29894 0.91883 0.95209 0.93231 1.81133 1.09970 1.13249 1.08590 1.21068 0.93513 0.97149 1.01337 1.17314 0.88380 0.82319 1.05176 1.91519 1.79357 1.46037 1.93933 0.88665 0.90239 0.87602 0.79014 0.90386 0.86416 0.82772 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.82 71.24 0.70 -0.34 16 2 C -0.06 -0.99 5.89 -19.77 -0.12 -1.11 16 3 C -0.11 -1.94 9.66 22.27 0.22 -1.73 16 4 C 0.12 3.64 7.28 22.68 0.16 3.80 16 5 F -0.13 -4.64 16.70 44.97 0.75 -3.89 16 6 C -0.15 -5.09 4.68 -20.06 -0.09 -5.18 16 7 C 0.51 24.02 6.82 86.71 0.59 24.61 16 8 O -0.58 -32.62 16.81 -4.07 -0.07 -32.69 16 9 N -0.46 -21.47 2.09 -648.96 -1.36 -22.83 16 10 C -0.35 -19.63 9.31 84.10 0.78 -18.85 16 11 H 0.05 3.40 7.93 -2.91 -0.02 3.37 16 12 C 0.02 1.10 5.36 84.95 0.46 1.55 16 13 N -0.90 -51.08 13.95 21.68 0.30 -50.78 16 14 Si 0.92 36.45 25.08 68.60 1.72 38.17 16 15 H -0.22 -7.20 6.58 99.48 0.65 -6.55 16 16 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 17 H -0.24 -8.84 7.11 99.48 0.71 -8.13 16 18 C 0.17 6.28 4.36 84.57 0.37 6.65 16 19 C 0.22 8.22 13.25 89.43 1.19 9.41 16 20 N -0.45 -18.22 18.54 20.02 0.37 -17.85 16 21 C -0.11 -3.28 7.70 22.58 0.17 -3.11 16 22 C 0.09 2.03 7.23 22.33 0.16 2.19 16 23 F -0.13 -3.01 16.45 44.97 0.74 -2.27 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.73 7.62 -2.39 -0.02 0.71 16 26 H 0.11 0.44 8.08 -2.39 -0.02 0.42 16 27 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 28 H 0.29 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.12 4.11 3.15 -2.39 -0.01 4.11 16 30 H 0.15 4.21 5.82 -2.38 -0.01 4.19 16 31 H 0.13 4.19 5.44 -2.91 -0.02 4.18 16 Total: -1.00 -73.74 284.33 8.21 -65.53 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.16 Total: 8.71 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 4.59 Total: 17.89 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -0.68 Total: -91.46 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.07 Total: -32.69 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 1.49 Total: -6.16 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 1.72 Total: 38.17 kcal Total: -73.74 8.21 -65.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135221168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.057 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds