Wall clock time and date at job start Tue Mar 31 2020 01:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47186 * 2 1 4 4 C 1.36935 * 119.99858 * 269.51103 * 3 2 1 5 5 H 1.07999 * 120.00504 * 326.09703 * 4 3 2 6 6 C 1.38815 * 119.99616 * 146.09451 * 4 3 2 7 7 N 1.31621 * 120.00086 * 336.59508 * 6 4 3 8 8 Si 1.86801 * 119.99870 * 156.59165 * 6 4 3 9 9 H 1.48497 * 109.47135 * 90.00077 * 8 6 4 10 10 H 1.48509 * 109.47111 * 210.00155 * 8 6 4 11 11 H 1.48500 * 109.47058 * 329.99977 * 8 6 4 12 12 C 1.46500 * 119.99944 * 89.51488 * 3 2 1 13 13 C 1.50701 * 109.47388 * 89.99953 * 12 3 2 14 14 N 1.29028 * 124.91621 * 89.99364 * 13 12 3 15 15 C 1.31787 * 117.12626 * 180.02562 * 14 13 12 16 16 C 1.50696 * 122.74806 * 179.97438 * 15 14 13 17 17 F 1.39895 * 109.47613 * 5.03046 * 16 15 14 18 18 F 1.39900 * 109.47069 * 245.02479 * 16 15 14 19 19 F 1.39909 * 109.46809 * 125.02979 * 16 15 14 20 20 C 1.33636 * 114.49807 * 0.24071 * 15 14 13 21 21 S 1.70974 * 124.91768 * 270.00032 * 13 12 3 22 22 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47271 * 299.99741 * 1 2 3 24 24 H 1.08997 * 109.47352 * 59.99824 * 1 2 3 25 25 H 1.08999 * 109.47271 * 240.00259 * 2 1 3 26 26 H 1.08997 * 109.47352 * 120.00176 * 2 1 3 27 27 H 0.97003 * 119.99657 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46986 * 330.00126 * 12 3 2 29 29 H 1.08997 * 109.47385 * 209.99965 * 12 3 2 30 30 H 1.07998 * 126.03698 * 179.76993 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2561 2.0233 -1.1859 5 1 2.6207 1.4678 -2.0372 6 6 2.0284 3.3884 -1.2937 7 7 1.1854 3.9817 -0.4753 8 14 2.9183 4.3834 -2.6005 9 1 2.1090 4.4017 -3.8454 10 1 3.1136 5.7737 -2.1165 11 1 4.2399 3.7657 -2.8782 12 6 2.2523 2.0754 1.2687 13 6 3.6721 1.8398 1.7158 14 7 4.6775 2.5867 1.4058 15 6 5.8554 2.2367 1.8821 16 6 7.1135 3.0167 1.5995 17 9 6.7933 4.1748 0.8831 18 9 7.9907 2.2296 0.8457 19 9 7.7246 3.3697 2.8076 20 6 5.8437 1.1304 2.6316 21 16 4.1838 0.5442 2.7071 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.0266 4.9357 -0.5505 28 1 1.5655 1.6934 2.0239 29 1 2.0865 3.1442 1.1341 30 1 6.6999 0.6771 3.1088 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152104993.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:08 Heat of formation + Delta-G solvation = -84.134258 kcal Electronic energy + Delta-G solvation = -20142.825721 eV Core-core repulsion = 16458.051596 eV Total energy + Delta-G solvation = -3684.774125 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.90618 -47.47401 -47.31900 -39.36943 -36.16549 -31.96936 -31.49372 -29.06827 -26.90518 -26.54349 -23.94028 -22.56146 -20.67670 -19.35765 -18.74900 -18.32277 -17.88488 -16.87514 -16.30036 -15.03036 -14.69983 -14.36522 -14.29642 -14.05487 -13.91904 -13.84498 -13.53200 -13.50110 -13.47816 -12.93180 -12.69336 -12.38679 -11.90628 -11.28808 -11.25101 -11.19713 -10.72914 -10.56697 -10.27646 -10.22753 -9.93574 -9.16605 -9.07883 -8.71511 -8.62810 -6.89663 -5.98271 -3.46902 0.90190 1.58173 2.02433 2.88359 2.91743 3.36413 3.45767 3.51706 3.87486 4.35147 4.42535 4.62578 4.97098 5.23826 5.34039 5.43675 5.58331 5.93074 6.13607 6.30974 6.37448 6.42974 6.51800 6.81873 7.10466 7.33218 7.69384 8.11315 8.31580 8.94635 9.60469 10.10964 11.04072 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.008090 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.505969 B = 3460.109661 C = 4743.975064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 N -0.562 5.562 4 C -0.261 4.261 5 H 0.065 0.935 6 C 0.025 3.975 7 N -0.876 5.876 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.199 3.801 13 C 0.093 3.907 14 N -0.448 5.448 15 C -0.012 4.012 16 C 0.543 3.457 17 F -0.161 7.161 18 F -0.176 7.176 19 F -0.177 7.177 20 C -0.238 4.238 21 S 0.108 5.892 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.056 0.944 29 H 0.135 0.865 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 -5.880 7.391 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 N -0.281 5.281 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.177 4.177 7 N -0.517 5.517 8 Si 0.729 3.271 9 H -0.213 1.213 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.067 3.933 13 C -0.189 4.189 14 N -0.161 5.161 15 C -0.148 4.148 16 C 0.486 3.514 17 F -0.142 7.142 18 F -0.157 7.157 19 F -0.159 7.159 20 C -0.381 4.381 21 S 0.366 5.634 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.702 -6.101 7.515 11.234 hybrid contribution 1.664 1.081 -0.874 2.168 sum 7.366 -5.020 6.641 11.116 Atomic orbital electron populations 1.22223 0.98718 0.98837 1.02281 1.20974 0.92622 0.86477 0.98685 1.43880 1.71852 1.10649 1.01697 1.19023 1.38625 0.91599 0.89784 0.91725 1.25035 0.96263 0.98249 0.98143 1.69887 1.31558 1.10782 1.39468 0.86345 0.80250 0.79723 0.80783 1.21309 1.21072 1.20083 1.20078 0.81604 1.04604 0.86992 1.29857 1.02858 0.91538 0.94618 1.65918 0.96763 1.30938 1.22530 1.19977 0.93763 0.97229 1.03861 1.17392 0.82328 0.77591 0.74074 1.93240 1.92608 1.50103 1.78283 1.93201 1.71169 1.74536 1.76796 1.93189 1.84621 1.92403 1.45664 1.26513 1.02555 1.00969 1.08017 1.83932 0.98689 1.32648 1.48177 0.94621 0.93564 0.92282 0.93375 0.94733 0.92995 0.92543 0.84802 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.24 37.16 0.38 -2.53 16 2 C 0.14 2.68 6.39 -4.04 -0.03 2.65 16 3 N -0.56 -13.06 2.44 -174.62 -0.43 -13.48 16 4 C -0.26 -6.84 9.48 -15.06 -0.14 -6.98 16 5 H 0.07 1.72 7.93 -52.49 -0.42 1.30 16 6 C 0.03 0.67 4.94 -17.43 -0.09 0.58 16 7 N -0.88 -23.92 11.34 55.49 0.63 -23.29 16 8 Si 0.90 21.94 29.61 -169.99 -5.03 16.91 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.20 4.37 5.87 -5.19 -0.03 4.34 16 13 C 0.09 1.90 6.97 -13.46 -0.09 1.80 16 14 N -0.45 -9.82 10.14 -8.06 -0.08 -9.90 16 15 C -0.01 -0.23 6.16 -84.23 -0.52 -0.75 16 16 C 0.54 9.45 3.39 36.00 0.12 9.57 16 17 F -0.16 -3.15 17.01 2.25 0.04 -3.11 16 18 F -0.18 -2.91 17.30 2.25 0.04 -2.87 16 19 F -0.18 -2.75 17.22 2.25 0.04 -2.71 16 20 C -0.24 -3.69 11.05 29.12 0.32 -3.37 16 21 S 0.11 1.69 23.18 -107.50 -2.49 -0.80 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 26 H 0.03 0.59 8.08 -51.93 -0.42 0.18 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.14 3.42 5.33 -51.93 -0.28 3.14 16 30 H 0.18 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 292.27 15.07 4.40 4.40 Total: -1.00 -27.95 292.27 -5.73 -33.68 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: -2.77 Total: -4.16 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.07 Total: 5.33 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.12 Total: -46.68 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 0.12 Total: -8.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.49 Total: -0.80 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.95 -5.73 -33.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152104993.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.454 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds