Wall clock time and date at job start Tue Mar 31 2020 01:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47186 * 2 1 4 4 C 1.36935 * 119.99858 * 269.51103 * 3 2 1 5 5 H 1.07999 * 120.00504 * 326.09703 * 4 3 2 6 6 C 1.38815 * 119.99616 * 146.09451 * 4 3 2 7 7 N 1.31621 * 120.00086 * 336.59508 * 6 4 3 8 8 Si 1.86801 * 119.99870 * 156.59165 * 6 4 3 9 9 H 1.48497 * 109.47135 * 90.00077 * 8 6 4 10 10 H 1.48509 * 109.47111 * 210.00155 * 8 6 4 11 11 H 1.48500 * 109.47058 * 329.99977 * 8 6 4 12 12 C 1.46500 * 119.99944 * 89.51488 * 3 2 1 13 13 C 1.50701 * 109.47388 * 89.99953 * 12 3 2 14 14 N 1.29028 * 124.91621 * 89.99364 * 13 12 3 15 15 C 1.31787 * 117.12626 * 180.02562 * 14 13 12 16 16 C 1.50696 * 122.74806 * 179.97438 * 15 14 13 17 17 F 1.39895 * 109.47613 * 5.03046 * 16 15 14 18 18 F 1.39900 * 109.47069 * 245.02479 * 16 15 14 19 19 F 1.39909 * 109.46809 * 125.02979 * 16 15 14 20 20 C 1.33636 * 114.49807 * 0.24071 * 15 14 13 21 21 S 1.70974 * 124.91768 * 270.00032 * 13 12 3 22 22 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47271 * 299.99741 * 1 2 3 24 24 H 1.08997 * 109.47352 * 59.99824 * 1 2 3 25 25 H 1.08999 * 109.47271 * 240.00259 * 2 1 3 26 26 H 1.08997 * 109.47352 * 120.00176 * 2 1 3 27 27 H 0.97003 * 119.99657 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46986 * 330.00126 * 12 3 2 29 29 H 1.08997 * 109.47385 * 209.99965 * 12 3 2 30 30 H 1.07998 * 126.03698 * 179.76993 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2561 2.0233 -1.1859 5 1 2.6207 1.4678 -2.0372 6 6 2.0284 3.3884 -1.2937 7 7 1.1854 3.9817 -0.4753 8 14 2.9183 4.3834 -2.6005 9 1 2.1090 4.4017 -3.8454 10 1 3.1136 5.7737 -2.1165 11 1 4.2399 3.7657 -2.8782 12 6 2.2523 2.0754 1.2687 13 6 3.6721 1.8398 1.7158 14 7 4.6775 2.5867 1.4058 15 6 5.8554 2.2367 1.8821 16 6 7.1135 3.0167 1.5995 17 9 6.7933 4.1748 0.8831 18 9 7.9907 2.2296 0.8457 19 9 7.7246 3.3697 2.8076 20 6 5.8437 1.1304 2.6316 21 16 4.1838 0.5442 2.7071 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.0266 4.9357 -0.5505 28 1 1.5655 1.6934 2.0239 29 1 2.0865 3.1442 1.1341 30 1 6.6999 0.6771 3.1088 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152104993.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:08 Heat of formation + Delta-G solvation = -100.215586 kcal Electronic energy + Delta-G solvation = -20143.523059 eV Core-core repulsion = 16458.051596 eV Total energy + Delta-G solvation = -3685.471463 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.25017 -48.76702 -48.73026 -40.83611 -37.85358 -33.82352 -32.96230 -30.65703 -28.59929 -27.90095 -25.69371 -24.04292 -22.26429 -20.86143 -20.15835 -19.65392 -19.29806 -18.64557 -17.68012 -16.84456 -16.24695 -15.86115 -15.73875 -15.67064 -15.46288 -15.17645 -14.95919 -14.89806 -14.88443 -14.50348 -14.11913 -13.98217 -13.40651 -13.17453 -12.90972 -12.55403 -12.51962 -12.38572 -12.12693 -11.97481 -11.55168 -10.63776 -10.58846 -10.43513 -10.07223 -8.73866 -7.93045 -5.45316 -0.44364 0.27298 0.58382 1.38032 1.44855 1.46965 1.52946 1.54842 2.47190 2.51787 3.00138 3.22439 3.29756 3.60178 3.73853 4.13083 4.23750 4.44010 4.59396 4.82399 4.86235 4.90323 5.09480 5.31263 5.50633 5.59928 5.72745 6.38037 6.73464 7.07129 7.76452 8.23223 9.05741 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.008090 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.505969 B = 3460.109661 C = 4743.975064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.580 5.580 4 C -0.263 4.263 5 H 0.053 0.947 6 C -0.014 4.014 7 N -0.901 5.901 8 Si 0.938 3.062 9 H -0.278 1.278 10 H -0.293 1.293 11 H -0.285 1.285 12 C 0.203 3.797 13 C 0.050 3.950 14 N -0.488 5.488 15 C -0.049 4.049 16 C 0.548 3.452 17 F -0.180 7.180 18 F -0.171 7.171 19 F -0.165 7.165 20 C -0.211 4.211 21 S 0.213 5.787 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.028 0.972 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.254 0.746 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -8.294 9.196 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 N -0.300 5.300 4 C -0.393 4.393 5 H 0.071 0.929 6 C -0.213 4.213 7 N -0.544 5.544 8 Si 0.768 3.232 9 H -0.204 1.204 10 H -0.219 1.219 11 H -0.211 1.211 12 C 0.073 3.927 13 C -0.231 4.231 14 N -0.203 5.203 15 C -0.184 4.184 16 C 0.491 3.509 17 F -0.161 7.161 18 F -0.152 7.152 19 F -0.146 7.146 20 C -0.353 4.353 21 S 0.470 5.530 22 H 0.089 0.911 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.853 -8.531 9.320 14.375 hybrid contribution 1.443 1.667 -1.219 2.520 sum 8.297 -6.864 8.101 13.476 Atomic orbital electron populations 1.22108 0.97884 1.00563 1.00510 1.21128 0.93273 0.84819 0.99825 1.43982 1.73312 1.11650 1.01088 1.19059 1.37611 0.91723 0.90900 0.92907 1.25427 0.97251 0.99078 0.99531 1.69980 1.33208 1.10297 1.40936 0.85745 0.79127 0.78386 0.79980 1.20445 1.21943 1.21133 1.19718 0.83429 1.02463 0.87126 1.29152 1.01900 0.94503 0.97529 1.65835 0.98163 1.32830 1.23424 1.20097 0.93234 0.99145 1.05966 1.17305 0.82359 0.77006 0.74258 1.93200 1.92830 1.51229 1.78859 1.93207 1.70957 1.74274 1.76794 1.93209 1.84361 1.92290 1.44763 1.27176 1.04234 0.99001 1.04865 1.83466 0.97240 1.27895 1.44395 0.91056 0.94022 0.95305 0.93614 0.92001 0.93687 0.90642 0.88821 0.76354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 10.24 71.98 0.74 -4.52 16 2 C 0.13 4.99 6.39 86.38 0.55 5.55 16 3 N -0.58 -26.92 2.44 -706.36 -1.72 -28.64 16 4 C -0.26 -14.07 9.48 84.03 0.80 -13.28 16 5 H 0.05 2.88 7.93 -2.91 -0.02 2.86 16 6 C -0.01 -0.77 4.94 84.86 0.42 -0.35 16 7 N -0.90 -51.14 11.34 21.65 0.25 -50.90 16 8 Si 0.94 46.52 29.61 68.60 2.03 48.55 16 9 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 10 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 11 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 12 C 0.20 8.94 5.87 85.63 0.50 9.45 16 13 C 0.05 1.97 6.97 88.52 0.62 2.59 16 14 N -0.49 -21.06 10.14 -179.41 -1.82 -22.88 16 15 C -0.05 -1.74 6.16 41.52 0.26 -1.48 16 16 C 0.55 18.21 3.39 71.23 0.24 18.45 16 17 F -0.18 -7.04 17.01 44.97 0.76 -6.28 16 18 F -0.17 -5.34 17.30 44.97 0.78 -4.56 16 19 F -0.16 -4.73 17.22 44.97 0.77 -3.96 16 20 C -0.21 -5.59 11.05 66.78 0.74 -4.85 16 21 S 0.21 5.73 23.18 -56.49 -1.31 4.42 16 22 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.70 8.04 -2.39 -0.02 1.68 16 26 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 29 H 0.09 4.95 5.33 -2.39 -0.01 4.94 16 30 H 0.22 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -62.84 292.27 5.78 -57.06 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: 1.17 Total: -4.37 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 4.86 Total: 11.56 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.29 Total: -102.43 kcal Atomic # 9 Polarization: -17.12 SS G_CDS: 2.32 Total: -14.80 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.31 Total: 4.42 kcal Total: -62.84 5.78 -57.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152104993.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.159 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds