Wall clock time and date at job start Tue Mar 31 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47221 * 2 1 4 4 C 1.50702 * 109.47232 * 120.00237 * 2 1 3 5 5 H 1.07994 * 120.00033 * 120.00548 * 4 2 1 6 6 C 1.37872 * 119.99794 * 300.00044 * 4 2 1 7 7 N 1.31513 * 120.00158 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00026 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47171 * 59.99985 * 8 6 4 10 10 H 1.48497 * 109.47212 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46866 * 300.00115 * 8 6 4 12 12 N 1.46507 * 109.47312 * 240.00340 * 2 1 3 13 13 C 1.37784 * 119.99792 * 84.99995 * 12 2 1 14 14 N 1.29404 * 120.47850 * 359.97438 * 13 12 2 15 15 S 1.67224 * 106.21297 * 180.02562 * 14 13 12 16 16 O 1.42098 * 107.58618 * 112.01654 * 15 14 13 17 17 O 1.42103 * 107.58642 * 247.95084 * 15 14 13 18 18 C 1.77126 * 99.56305 * 0.02562 * 15 14 13 19 19 C 1.36529 * 134.75285 * 179.97438 * 18 15 14 20 20 C 1.38746 * 119.65392 * 180.02562 * 19 18 15 21 21 C 1.38367 * 119.52146 * 0.02562 * 20 19 18 22 22 C 1.37675 * 120.94456 * 359.97438 * 21 20 19 23 23 C 1.40104 * 103.14103 * 359.97438 * 18 15 14 24 24 H 1.09000 * 109.47531 * 299.99753 * 1 2 3 25 25 H 1.08997 * 109.47028 * 59.99938 * 1 2 3 26 26 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00329 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99974 * 265.00049 * 12 2 1 29 29 H 1.08003 * 120.17645 * 0.02562 * 19 18 15 30 30 H 1.07998 * 120.24119 * 180.02562 * 20 19 18 31 31 H 1.08002 * 119.52943 * 180.26209 * 21 20 19 32 32 H 1.07998 * 119.84691 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8257 -2.5203 4.0076 12 7 2.0183 -0.6906 -1.1962 13 6 2.1499 -0.0031 -2.3831 14 7 1.8444 1.2525 -2.4516 15 16 2.1346 1.7180 -4.0313 16 8 0.8791 2.0058 -4.6316 17 8 3.2375 2.6139 -4.0192 18 6 2.7025 0.1762 -4.6929 19 6 3.1286 -0.2447 -5.9198 20 6 3.5137 -1.5658 -6.0967 21 6 3.4604 -2.4407 -5.0261 22 6 3.0312 -2.0190 -3.7878 23 6 2.6389 -0.6861 -3.5905 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1613 3.4844 28 1 2.2490 -1.6317 -1.1527 29 1 3.1657 0.4471 -6.7484 30 1 3.8527 -1.9088 -7.0630 31 1 3.7642 -3.4681 -5.1626 32 1 2.9970 -2.7169 -2.9644 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156940875.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:06 Heat of formation + Delta-G solvation = -30.903856 kcal Electronic energy + Delta-G solvation = -19419.214393 eV Core-core repulsion = 16278.605252 eV Total energy + Delta-G solvation = -3140.609141 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35839 -38.97361 -38.25140 -36.94043 -36.44032 -34.21491 -32.30353 -31.93529 -30.64100 -27.35527 -25.12498 -24.33512 -23.00138 -22.24195 -20.30128 -19.39412 -18.45827 -18.08827 -17.25260 -17.00187 -16.87063 -16.48006 -15.84315 -15.53509 -15.23765 -15.00169 -14.50687 -14.09564 -13.88092 -13.55842 -13.47337 -13.27880 -13.18371 -12.98831 -12.78880 -12.69893 -12.61348 -12.25223 -12.14296 -11.68814 -11.14258 -11.07813 -10.59310 -10.52788 -10.19160 -9.83049 -8.18585 -6.37106 -0.89479 -0.59605 0.01087 1.01504 1.47150 1.48851 1.56635 1.73414 2.13839 2.36297 2.43769 2.45607 2.99375 3.13181 3.48797 3.77981 3.96005 4.14994 4.22572 4.40293 4.68740 4.74164 4.80830 4.90980 5.03989 5.08410 5.16522 5.21111 5.32230 5.55132 5.68823 5.74841 5.99968 6.09968 6.59463 6.85902 7.34558 8.87361 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.005318 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.086338 B = 5263.873939 C = 6025.066832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.267 3.733 3 H 0.023 0.977 4 C -0.552 4.552 5 H 0.080 0.920 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.290 1.290 11 H -0.262 1.262 12 N -0.628 5.628 13 C 0.490 3.510 14 N -0.931 5.931 15 S 2.577 3.423 16 O -0.993 6.993 17 O -0.995 6.995 18 C -0.632 4.632 19 C -0.012 4.012 20 C -0.085 4.085 21 C -0.074 4.074 22 C -0.051 4.051 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.019 0.981 26 H 0.043 0.957 27 H 0.266 0.734 28 H 0.421 0.579 29 H 0.160 0.840 30 H 0.189 0.811 31 H 0.189 0.811 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 -13.067 -15.542 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.164 3.836 3 H 0.041 0.959 4 C -0.590 4.590 5 H 0.098 0.902 6 C -0.183 4.183 7 N -0.552 5.552 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.216 1.216 11 H -0.186 1.186 12 N -0.254 5.254 13 C 0.214 3.786 14 N -0.789 5.789 15 S 2.668 3.332 16 O -0.982 6.982 17 O -0.984 6.984 18 C -0.723 4.723 19 C -0.031 4.031 20 C -0.105 4.105 21 C -0.091 4.091 22 C -0.072 4.072 23 C -0.134 4.134 24 H 0.089 0.911 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.260 0.740 29 H 0.177 0.823 30 H 0.206 0.794 31 H 0.207 0.793 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.678 -11.141 -15.105 19.609 hybrid contribution 0.330 -0.819 0.783 1.180 sum 6.007 -11.960 -14.322 19.602 Atomic orbital electron populations 1.21935 0.97561 0.99880 1.00328 1.18775 0.91647 0.92994 0.80148 0.95885 1.21471 1.33198 1.14015 0.90358 0.90158 1.25759 0.94753 0.95502 1.02281 1.70043 1.36599 1.23711 1.24841 0.85372 0.78579 0.78727 0.77496 1.19635 1.21564 1.18638 1.45600 1.60041 1.13347 1.06461 1.20629 0.82126 0.88067 0.87735 1.77640 1.49447 1.15892 1.35942 1.06137 0.73896 0.76492 0.76655 1.93531 1.42269 1.84803 1.77566 1.93532 1.53574 1.64072 1.87223 1.30813 1.15914 1.22888 1.02671 1.20568 0.91116 0.98115 0.93259 1.22335 0.94974 0.91479 1.01673 1.21900 0.94089 1.02566 0.90559 1.21577 0.93841 0.91333 1.00473 1.20015 1.05285 0.98492 0.89651 0.91130 0.96145 0.93756 0.92454 0.73955 0.82273 0.79381 0.79338 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.67 9.27 71.98 0.67 -6.00 16 2 C 0.27 12.93 2.57 44.24 0.11 13.05 16 3 H 0.02 1.33 7.56 -2.39 -0.02 1.31 16 4 C -0.55 -27.22 8.73 25.60 0.22 -27.00 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.91 -50.81 11.32 21.45 0.24 -50.56 16 8 Si 0.97 40.08 29.54 68.60 2.03 42.11 16 9 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 12 N -0.63 -23.52 5.18 -342.82 -1.78 -25.29 16 13 C 0.49 18.35 7.50 136.46 1.02 19.37 16 14 N -0.93 -41.64 10.86 -66.35 -0.72 -42.36 16 15 S 2.58 103.78 6.47 -56.49 -0.37 103.41 16 16 O -0.99 -44.42 18.09 -128.17 -2.32 -46.74 16 17 O -0.99 -45.04 18.09 -128.17 -2.32 -47.36 16 18 C -0.63 -18.43 6.56 22.32 0.15 -18.29 16 19 C -0.01 -0.23 10.02 21.99 0.22 -0.01 16 20 C -0.09 -0.92 10.10 22.42 0.23 -0.70 16 21 C -0.07 -0.73 9.97 22.17 0.22 -0.51 16 22 C -0.05 -0.86 9.84 22.65 0.22 -0.64 16 23 C -0.13 -3.57 6.10 -19.99 -0.12 -3.69 16 24 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.42 12.12 7.86 -92.71 -0.73 11.39 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 31 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.17 1.79 7.55 -2.91 -0.02 1.77 16 Total: -1.00 -78.69 292.38 -1.40 -80.10 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.44 Total: 9.73 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.39 Total: -23.04 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -2.25 Total: -118.21 kcal Atomic # 8 Polarization: -89.46 SS G_CDS: -4.64 Total: -94.10 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 103.78 SS G_CDS: -0.37 Total: 103.41 kcal Total: -78.69 -1.40 -80.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156940875.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.192 kcal (2) G-P(sol) polarization free energy of solvation -78.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds