Wall clock time and date at job start Tue Mar 31 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37881 * 120.26834 * 2 1 4 4 C 1.39667 * 118.81489 * 179.97438 * 3 2 1 5 5 O 1.22117 * 120.22383 * 179.97438 * 4 3 2 6 6 N 1.36248 * 119.55125 * 0.02562 * 4 3 2 7 7 N 1.38918 * 127.79169 * 179.97438 * 6 4 3 8 8 C 1.27374 * 117.02924 * 180.02562 * 7 6 4 9 9 C 1.50700 * 124.89865 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47615 * 0.02562 * 9 8 7 11 11 C 1.46501 * 120.00134 * 89.99770 * 10 9 8 12 12 C 1.36937 * 119.99726 * 269.99779 * 10 9 8 13 13 H 1.08005 * 119.99811 * 142.04808 * 12 10 9 14 14 C 1.38809 * 119.99916 * 322.05013 * 12 10 9 15 15 N 1.31622 * 119.99709 * 157.00352 * 14 12 10 16 16 Si 1.86793 * 120.00318 * 337.00163 * 14 12 10 17 17 H 1.48501 * 109.46941 * 95.68223 * 16 14 12 18 18 H 1.48494 * 109.47439 * 215.68135 * 16 14 12 19 19 H 1.48501 * 109.47158 * 335.68351 * 16 14 12 20 20 S 1.75698 * 110.19042 * 0.02562 * 8 7 6 21 21 C 1.35227 * 118.90573 * 359.97438 * 6 4 3 22 22 N 1.32436 * 120.26171 * 179.97438 * 2 1 3 23 23 H 1.09006 * 109.47362 * 89.99516 * 1 2 3 24 24 H 1.09002 * 109.47267 * 210.00092 * 1 2 3 25 25 H 1.09001 * 109.47159 * 329.99859 * 1 2 3 26 26 H 1.08003 * 120.59125 * 359.95655 * 3 2 1 27 27 H 1.09002 * 109.46561 * 120.00590 * 9 8 7 28 28 H 1.08994 * 109.47152 * 239.99893 * 9 8 7 29 29 H 1.08995 * 109.47151 * 85.75399 * 11 10 9 30 30 H 1.08998 * 109.47032 * 205.75174 * 11 10 9 31 31 H 1.08999 * 109.47003 * 325.74750 * 11 10 9 32 32 H 0.97006 * 120.00036 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1908 0.0000 4 6 3.5982 1.1554 0.0005 5 8 4.2395 2.1947 0.0001 6 7 4.2399 -0.0465 0.0005 7 7 5.6093 -0.2804 0.0005 8 6 5.9888 -1.4963 0.0000 9 6 7.4255 -1.9510 0.0005 10 7 8.3080 -0.7817 0.0022 11 6 8.7484 -0.1982 1.2718 12 6 8.7212 -0.2340 -1.1829 13 1 8.8095 0.8380 -1.2807 14 6 9.0265 -1.0566 -2.2585 15 7 8.9805 -0.5806 -3.4848 16 14 9.5027 -2.8389 -1.9657 17 1 8.3047 -3.7029 -2.1193 18 1 10.5351 -3.2441 -2.9531 19 1 10.0467 -2.9867 -0.5918 20 16 4.5954 -2.5665 -0.0013 21 6 3.5035 -1.1806 0.0005 22 7 2.1744 -1.1439 0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6761 2.1342 -0.0007 27 1 7.6163 -2.5512 0.8902 28 1 7.6173 -2.5500 -0.8897 29 1 9.6359 -0.7234 1.6246 30 1 8.9844 0.8557 1.1248 31 1 7.9525 -0.2927 2.0106 32 1 9.1942 -1.1554 -4.2365 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170778300.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:56 Heat of formation + Delta-G solvation = 76.912628 kcal Electronic energy + Delta-G solvation = -19478.768244 eV Core-core repulsion = 16375.127127 eV Total energy + Delta-G solvation = -3103.641116 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.22845 -39.80117 -38.94027 -37.78262 -34.52561 -33.66711 -32.53815 -30.37710 -28.84726 -28.03706 -26.88184 -24.22618 -23.63683 -22.41163 -20.64233 -19.74078 -19.20166 -18.15844 -18.04996 -17.44389 -16.63247 -16.07993 -15.80923 -15.57416 -15.27886 -14.89118 -14.76030 -14.58649 -14.31637 -13.99587 -13.74928 -13.53189 -13.23126 -13.06087 -12.66854 -12.51689 -12.26999 -12.06013 -11.74532 -11.60559 -11.27466 -11.10887 -10.82987 -10.72926 -9.22561 -9.04147 -8.27958 -5.71806 -1.09037 -0.89721 -0.20315 0.03868 0.50959 0.57497 1.28146 1.46724 1.58286 2.20437 2.36162 2.64155 2.86637 3.02807 3.24189 3.38253 3.70810 4.08600 4.12580 4.18989 4.36733 4.58697 4.67309 4.77114 4.80957 4.97541 5.07458 5.14928 5.27809 5.68147 5.82989 6.09964 6.22445 6.55732 6.77609 7.42206 7.79957 8.91661 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.005847 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.950310 B = 4787.624687 C = 5120.384634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.218 3.782 3 C -0.315 4.315 4 C 0.516 3.484 5 O -0.573 6.573 6 N -0.375 5.375 7 N -0.249 5.249 8 C 0.082 3.918 9 C 0.192 3.808 10 N -0.591 5.591 11 C 0.124 3.876 12 C -0.271 4.271 13 H 0.022 0.978 14 C -0.021 4.021 15 N -0.943 5.943 16 Si 0.937 3.063 17 H -0.247 1.247 18 H -0.302 1.302 19 H -0.232 1.232 20 S 0.227 5.773 21 C 0.267 3.733 22 N -0.508 5.508 23 H 0.108 0.892 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.188 0.812 27 H 0.149 0.851 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.144 -9.991 10.272 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.088 3.912 3 C -0.345 4.345 4 C 0.321 3.679 5 O -0.452 6.452 6 N -0.182 5.182 7 N -0.060 5.060 8 C -0.221 4.221 9 C 0.059 3.941 10 N -0.311 5.311 11 C -0.019 4.019 12 C -0.401 4.401 13 H 0.040 0.960 14 C -0.219 4.219 15 N -0.585 5.585 16 Si 0.761 3.239 17 H -0.173 1.173 18 H -0.230 1.230 19 H -0.154 1.154 20 S 0.466 5.534 21 C -0.102 4.102 22 N -0.239 5.239 23 H 0.127 0.873 24 H 0.116 0.884 25 H 0.129 0.871 26 H 0.205 0.795 27 H 0.166 0.834 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.983 -10.232 10.153 20.791 hybrid contribution 0.841 1.587 -0.739 1.942 sum -14.143 -8.644 9.414 19.062 Atomic orbital electron populations 1.20995 0.82594 1.06189 1.05642 1.22285 0.99624 0.85550 0.83743 1.22764 0.88282 1.03161 1.20278 1.18154 0.90096 0.80306 0.79338 1.90950 1.68763 1.31547 1.53984 1.50148 1.03149 1.09969 1.54923 1.74544 0.91286 1.20841 1.19336 1.31999 1.04342 0.91125 0.94623 1.21151 0.77149 0.90969 1.04803 1.44043 1.49413 1.34237 1.03421 1.21255 0.98146 0.97143 0.85396 1.18528 1.41335 0.90749 0.89531 0.96049 1.26320 0.97425 1.04071 0.94080 1.70076 1.49422 1.39669 0.99332 0.85942 0.79079 0.79071 0.79852 1.17311 1.23033 1.15432 1.85498 0.90173 0.99597 1.78098 1.27535 0.95171 0.92062 0.95419 1.68181 0.99961 1.30107 1.25623 0.87333 0.88368 0.87097 0.79482 0.83359 0.89220 0.93312 0.95164 0.92984 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.21 71.24 0.73 -0.46 16 2 C 0.22 5.32 6.81 42.38 0.29 5.61 16 3 C -0.32 -9.58 9.72 22.53 0.22 -9.36 16 4 C 0.52 22.04 7.65 84.35 0.65 22.68 16 5 O -0.57 -29.94 17.82 -5.70 -0.10 -30.04 16 6 N -0.37 -15.50 3.68 -317.46 -1.17 -16.67 16 7 N -0.25 -11.16 11.25 -49.15 -0.55 -11.72 16 8 C 0.08 2.98 7.45 88.75 0.66 3.64 16 9 C 0.19 6.77 5.13 85.63 0.44 7.21 16 10 N -0.59 -26.32 2.13 -731.33 -1.56 -27.87 16 11 C 0.12 4.66 10.70 127.77 1.37 6.03 16 12 C -0.27 -15.27 9.88 84.03 0.83 -14.43 16 13 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 14 C -0.02 -1.19 5.29 84.86 0.45 -0.74 16 15 N -0.94 -58.09 13.97 21.65 0.30 -57.78 16 16 Si 0.94 39.44 25.10 68.60 1.72 41.16 16 17 H -0.25 -9.05 6.68 99.48 0.66 -8.39 16 18 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.23 -8.64 7.11 99.48 0.71 -7.94 16 20 S 0.23 6.05 23.35 -56.49 -1.32 4.73 16 21 C 0.27 8.81 8.39 179.47 1.51 10.32 16 22 N -0.51 -14.44 10.36 -182.59 -1.89 -16.33 16 23 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 0.86 8.09 -2.39 -0.02 0.84 16 26 H 0.19 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.15 3.57 8.07 -2.39 -0.02 3.55 16 28 H 0.09 3.31 3.38 -2.39 -0.01 3.30 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.24 8.01 -2.39 -0.02 1.22 16 31 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.27 15.38 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -81.93 294.27 3.69 -78.24 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.12 Total: 5.79 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 7.13 Total: 30.49 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -4.87 Total: -130.37 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.10 Total: -30.04 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.72 Total: 41.16 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.32 Total: 4.73 kcal Total: -81.93 3.69 -78.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778300.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.157 kcal (2) G-P(sol) polarization free energy of solvation -81.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds