Wall clock time and date at job start Tue Mar 31 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99964 * 2 1 4 4 C 1.50692 * 109.47325 * 66.04734 * 3 2 1 5 5 H 1.08008 * 119.99579 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00363 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99936 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00098 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47487 * 59.99788 * 8 6 4 10 10 H 1.48506 * 109.47363 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47167 * 299.99767 * 8 6 4 12 12 C 1.46904 * 111.00096 * 236.04995 * 2 1 3 13 13 C 1.50706 * 109.47031 * 293.95120 * 12 2 1 14 14 N 1.29026 * 124.91150 * 89.99486 * 13 12 2 15 15 C 1.31787 * 117.11819 * 180.02562 * 14 13 12 16 16 C 1.50703 * 122.74684 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.47157 * 89.99994 * 16 15 14 18 18 F 1.39900 * 109.47159 * 330.00294 * 16 15 14 19 19 F 1.39897 * 109.47274 * 209.99985 * 16 15 14 20 20 C 1.33637 * 114.50489 * 0.23480 * 15 14 13 21 21 S 1.70978 * 124.91702 * 270.00175 * 13 12 2 22 22 H 1.08999 * 109.46988 * 183.95429 * 1 2 3 23 23 H 1.08997 * 109.46927 * 303.95189 * 1 2 3 24 24 H 1.09000 * 109.47069 * 63.95094 * 1 2 3 25 25 H 1.08997 * 109.47154 * 186.04896 * 3 2 1 26 26 H 1.09002 * 109.47311 * 306.04420 * 3 2 1 27 27 H 0.96999 * 120.00258 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47500 * 173.95077 * 12 2 1 29 29 H 1.09004 * 109.47325 * 53.95132 * 12 2 1 30 30 H 1.07997 * 126.03998 * 179.76897 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5111 2.0488 6 6 2.0268 3.3494 1.5284 7 7 2.7119 4.0019 0.6149 8 14 1.5830 4.1867 3.1382 9 1 2.1757 3.4296 4.2699 10 1 2.1140 5.5736 3.1377 11 1 0.1058 4.2229 3.2866 12 6 1.9955 -0.7659 -1.1377 13 6 1.6370 -2.2204 -0.9730 14 7 0.5586 -2.7703 -1.4195 15 6 0.4002 -4.0579 -1.1873 16 6 -0.8102 -4.8269 -1.6505 17 9 -0.5730 -5.3447 -2.9283 18 9 -1.9176 -3.9730 -1.6917 19 9 -1.0639 -5.8770 -0.7615 20 6 1.3983 -4.6245 -0.5028 21 16 2.6003 -3.3806 -0.1672 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3633 0.5739 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 2.9858 4.9182 0.7766 28 1 3.0797 -0.6610 -1.1758 29 1 1.5611 -0.3872 -2.0629 30 1 1.4587 -5.6621 -0.2092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174995269.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:07 Heat of formation + Delta-G solvation = -97.083401 kcal Electronic energy + Delta-G solvation = -19382.577244 eV Core-core repulsion = 15697.241602 eV Total energy + Delta-G solvation = -3685.335642 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.25434 -47.81319 -47.68190 -40.04085 -36.67466 -32.82209 -31.51881 -28.16907 -27.11992 -26.96552 -24.62990 -22.65993 -20.71308 -20.01106 -19.13810 -18.64377 -18.25445 -16.81132 -16.42569 -15.45609 -15.03274 -14.79698 -14.57011 -14.53788 -14.18094 -14.14617 -13.88329 -13.85989 -13.61190 -13.47713 -13.04272 -12.34814 -11.97532 -11.66235 -11.57761 -11.18204 -10.93298 -10.77614 -10.55722 -10.02531 -9.80858 -9.60994 -9.37036 -9.17835 -8.49428 -7.46706 -6.08925 -4.10681 0.39694 1.07402 1.48793 2.28151 2.49300 3.30978 3.35099 3.37991 3.44292 3.92601 4.26313 4.34687 4.43208 4.87987 5.00272 5.03052 5.27694 5.42936 5.76365 5.89377 6.16544 6.33497 6.74932 7.10939 7.21460 7.41746 7.67755 7.91879 8.05086 8.39909 8.95815 9.53763 11.01931 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.003956 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.439945 B = 7076.279757 C = 7348.553807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.535 5.535 3 C 0.194 3.806 4 C -0.510 4.510 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.120 3.880 13 C 0.085 3.915 14 N -0.452 5.452 15 C -0.020 4.020 16 C 0.547 3.453 17 F -0.173 7.173 18 F -0.163 7.163 19 F -0.173 7.173 20 C -0.228 4.228 21 S 0.209 5.791 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.017 0.983 25 H 0.033 0.967 26 H -0.003 1.003 27 H 0.263 0.737 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -18.198 -4.033 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.260 5.260 3 C 0.069 3.931 4 C -0.548 4.548 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.011 4.011 13 C -0.194 4.194 14 N -0.166 5.166 15 C -0.156 4.156 16 C 0.490 3.510 17 F -0.154 7.154 18 F -0.145 7.145 19 F -0.154 7.154 20 C -0.370 4.370 21 S 0.467 5.533 22 H 0.066 0.934 23 H 0.095 0.905 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.824 -17.858 -3.418 18.201 hybrid contribution -1.472 0.291 -0.250 1.521 sum -2.297 -17.567 -3.668 18.093 Atomic orbital electron populations 1.22245 0.87862 1.00103 1.00887 1.62236 1.08040 1.18211 1.37539 1.19785 0.95481 0.80579 0.97213 1.21066 1.35241 0.96980 1.01543 0.91811 1.24966 0.95168 0.97245 0.97055 1.69935 1.38118 1.11563 1.34110 0.86537 0.78768 0.78335 0.83637 1.20117 1.21310 1.20240 1.20759 1.00955 0.83716 0.95673 1.27312 0.92158 1.02311 0.97640 1.65902 1.20716 1.07750 1.22262 1.19881 0.97512 0.91896 1.06333 1.17266 0.82028 0.76854 0.74869 1.93225 1.94445 1.87466 1.40287 1.93241 1.54992 1.70148 1.96083 1.93197 1.94687 1.58973 1.68570 1.26946 0.98596 1.06052 1.05411 1.84193 1.21196 0.97685 1.50248 0.93388 0.90513 0.96398 0.94905 0.98559 0.92756 0.88581 0.91954 0.79587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.17 60.06 0.55 1.31 16 2 N -0.53 -11.08 4.74 -245.82 -1.17 -12.25 16 3 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 4 C -0.51 -13.85 8.46 -34.45 -0.29 -14.14 16 5 H 0.06 1.72 7.12 -52.48 -0.37 1.35 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -25.91 13.29 55.43 0.74 -25.18 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.12 2.04 5.54 -4.97 -0.03 2.01 16 13 C 0.08 1.29 6.04 -13.45 -0.08 1.21 16 14 N -0.45 -7.21 9.55 -8.05 -0.08 -7.29 16 15 C -0.02 -0.28 6.20 -84.22 -0.52 -0.80 16 16 C 0.55 7.05 3.49 36.01 0.13 7.18 16 17 F -0.17 -2.19 17.30 2.25 0.04 -2.15 16 18 F -0.16 -2.37 17.16 2.25 0.04 -2.33 16 19 F -0.17 -2.00 16.82 2.25 0.04 -1.96 16 20 C -0.23 -2.54 10.69 29.12 0.31 -2.23 16 21 S 0.21 2.48 23.18 -107.50 -2.49 -0.01 16 22 H 0.05 0.91 6.70 -51.93 -0.35 0.56 16 23 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 26 H 0.00 -0.09 8.12 -51.93 -0.42 -0.51 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 28 H 0.10 1.47 7.93 -51.93 -0.41 1.06 16 29 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 30 H 0.19 1.46 8.00 -52.49 -0.42 1.04 16 LS Contribution 289.82 15.07 4.37 4.37 Total: -1.00 -29.22 289.82 -6.31 -35.53 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -2.72 Total: -5.70 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.06 Total: 0.81 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.51 Total: -44.72 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.12 Total: -6.44 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.49 Total: -0.01 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.22 -6.31 -35.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174995269.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.557 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds