Wall clock time and date at job start Tue Mar 31 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99964 * 2 1 4 4 C 1.50692 * 109.47325 * 66.04734 * 3 2 1 5 5 H 1.08008 * 119.99579 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00363 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99936 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00098 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47487 * 59.99788 * 8 6 4 10 10 H 1.48506 * 109.47363 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47167 * 299.99767 * 8 6 4 12 12 C 1.46904 * 111.00096 * 236.04995 * 2 1 3 13 13 C 1.50706 * 109.47031 * 293.95120 * 12 2 1 14 14 N 1.29026 * 124.91150 * 89.99486 * 13 12 2 15 15 C 1.31787 * 117.11819 * 180.02562 * 14 13 12 16 16 C 1.50703 * 122.74684 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.47157 * 89.99994 * 16 15 14 18 18 F 1.39900 * 109.47159 * 330.00294 * 16 15 14 19 19 F 1.39897 * 109.47274 * 209.99985 * 16 15 14 20 20 C 1.33637 * 114.50489 * 0.23480 * 15 14 13 21 21 S 1.70978 * 124.91702 * 270.00175 * 13 12 2 22 22 H 1.08999 * 109.46988 * 183.95429 * 1 2 3 23 23 H 1.08997 * 109.46927 * 303.95189 * 1 2 3 24 24 H 1.09000 * 109.47069 * 63.95094 * 1 2 3 25 25 H 1.08997 * 109.47154 * 186.04896 * 3 2 1 26 26 H 1.09002 * 109.47311 * 306.04420 * 3 2 1 27 27 H 0.96999 * 120.00258 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47500 * 173.95077 * 12 2 1 29 29 H 1.09004 * 109.47325 * 53.95132 * 12 2 1 30 30 H 1.07997 * 126.03998 * 179.76897 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5111 2.0488 6 6 2.0268 3.3494 1.5284 7 7 2.7119 4.0019 0.6149 8 14 1.5830 4.1867 3.1382 9 1 2.1757 3.4296 4.2699 10 1 2.1140 5.5736 3.1377 11 1 0.1058 4.2229 3.2866 12 6 1.9955 -0.7659 -1.1377 13 6 1.6370 -2.2204 -0.9730 14 7 0.5586 -2.7703 -1.4195 15 6 0.4002 -4.0579 -1.1873 16 6 -0.8102 -4.8269 -1.6505 17 9 -0.5730 -5.3447 -2.9283 18 9 -1.9176 -3.9730 -1.6917 19 9 -1.0639 -5.8770 -0.7615 20 6 1.3983 -4.6245 -0.5028 21 16 2.6003 -3.3806 -0.1672 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3633 0.5739 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 2.9858 4.9182 0.7766 28 1 3.0797 -0.6610 -1.1758 29 1 1.5611 -0.3872 -2.0629 30 1 1.4587 -5.6621 -0.2092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174995269.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:07 Heat of formation + Delta-G solvation = -116.192754 kcal Electronic energy + Delta-G solvation = -19383.405888 eV Core-core repulsion = 15697.241602 eV Total energy + Delta-G solvation = -3686.164285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.24633 -48.77140 -48.72020 -41.12743 -38.30047 -34.78767 -32.79546 -29.70943 -28.81764 -28.00016 -26.31617 -24.06221 -22.33587 -21.14195 -20.19170 -19.63684 -19.26636 -18.50230 -17.77653 -16.99804 -16.42837 -16.26816 -15.82974 -15.66468 -15.51540 -15.16403 -14.98219 -14.94215 -14.87921 -14.82119 -14.19751 -13.96185 -13.62603 -13.35851 -12.89006 -12.70292 -12.60388 -12.55569 -12.35236 -11.93816 -11.40408 -10.87633 -10.65294 -10.57714 -10.23824 -9.18880 -8.19439 -6.28775 -0.60693 0.11268 0.45048 1.18966 1.44257 1.46164 1.50238 1.54195 2.40727 2.43989 2.93274 3.13659 3.18970 3.28967 3.48476 3.94398 4.06241 4.23524 4.43015 4.53761 4.62010 4.71579 5.04848 5.16983 5.23950 5.63642 5.99641 6.15527 6.38944 6.48353 6.85102 7.40494 8.91371 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.003956 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.439945 B = 7076.279757 C = 7348.553807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.537 5.537 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.007 3.993 7 N -0.932 5.932 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.123 3.877 13 C 0.046 3.954 14 N -0.475 5.475 15 C -0.049 4.049 16 C 0.552 3.448 17 F -0.173 7.173 18 F -0.177 7.177 19 F -0.163 7.163 20 C -0.202 4.202 21 S 0.269 5.731 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.011 0.989 25 H 0.019 0.981 26 H -0.032 1.032 27 H 0.265 0.735 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -19.945 -2.816 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.263 5.263 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.192 4.192 7 N -0.572 5.572 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.008 4.008 13 C -0.231 4.231 14 N -0.190 5.190 15 C -0.184 4.184 16 C 0.495 3.505 17 F -0.154 7.154 18 F -0.158 7.158 19 F -0.144 7.144 20 C -0.344 4.344 21 S 0.526 5.474 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.037 0.963 26 H -0.014 1.014 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.540 -19.627 -2.207 19.758 hybrid contribution -1.529 0.693 -0.657 1.803 sum -2.069 -18.933 -2.865 19.260 Atomic orbital electron populations 1.22112 0.87591 1.00487 0.99806 1.62100 1.08252 1.16029 1.39870 1.19443 0.94434 0.82524 0.95375 1.21386 1.35113 0.97530 1.02297 0.91961 1.25818 0.94969 0.97934 1.00459 1.70053 1.39157 1.11931 1.36059 0.85489 0.78659 0.77270 0.79520 1.19193 1.20892 1.19638 1.20679 1.01459 0.84791 0.93837 1.26836 0.93754 1.02138 1.00416 1.65802 1.21425 1.09197 1.22581 1.19979 0.98725 0.91479 1.08218 1.17183 0.81509 0.76847 0.74996 1.93224 1.94392 1.87415 1.40362 1.93212 1.55706 1.70718 1.96167 1.93213 1.94606 1.58407 1.68197 1.27447 0.96905 1.07524 1.02508 1.83976 1.19555 0.95887 1.47978 0.92036 0.92039 0.97048 0.96253 1.01391 0.92623 0.87343 0.92797 0.75867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.97 9.17 127.69 1.17 3.15 16 2 N -0.54 -22.49 4.74 -931.65 -4.42 -26.91 16 3 C 0.21 10.59 4.72 85.55 0.40 10.99 16 4 C -0.52 -28.84 8.46 25.60 0.22 -28.62 16 5 H 0.06 3.37 7.12 -2.91 -0.02 3.35 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -54.46 13.29 21.44 0.28 -54.17 16 8 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 C 0.12 4.19 5.54 85.56 0.47 4.66 16 13 C 0.05 1.37 6.04 88.52 0.53 1.90 16 14 N -0.48 -14.67 9.55 -179.39 -1.71 -16.38 16 15 C -0.05 -1.24 6.20 41.52 0.26 -0.99 16 16 C 0.55 13.32 3.49 71.24 0.25 13.57 16 17 F -0.17 -4.11 17.30 44.97 0.78 -3.33 16 18 F -0.18 -5.00 17.16 44.97 0.77 -4.23 16 19 F -0.16 -3.36 16.82 44.97 0.76 -2.61 16 20 C -0.20 -3.79 10.69 66.78 0.71 -3.08 16 21 S 0.27 5.62 23.18 -56.49 -1.31 4.31 16 22 H 0.06 2.32 6.70 -2.39 -0.02 2.30 16 23 H 0.06 2.64 6.76 -2.39 -0.02 2.63 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.02 1.03 7.93 -2.39 -0.02 1.01 16 26 H -0.03 -1.76 8.12 -2.39 -0.02 -1.78 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.11 3.32 7.93 -2.39 -0.02 3.30 16 29 H 0.05 1.90 8.12 -2.39 -0.02 1.88 16 30 H 0.22 2.37 8.00 -2.91 -0.02 2.35 16 Total: -1.00 -62.77 289.82 2.83 -59.94 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: 1.18 Total: -4.34 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 4.48 Total: 2.41 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -5.85 Total: -97.47 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 2.31 Total: -10.17 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.31 Total: 4.31 kcal Total: -62.77 2.83 -59.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174995269.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.256 kcal (2) G-P(sol) polarization free energy of solvation -62.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds