Wall clock time and date at job start Tue Mar 31 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37759 * 119.90313 * 2 1 4 4 C 1.39753 * 119.90018 * 179.74433 * 3 2 1 5 5 C 1.47471 * 120.14736 * 180.30193 * 4 3 2 6 6 O 1.21624 * 119.99847 * 124.71362 * 5 4 3 7 7 N 1.34775 * 119.99990 * 304.70618 * 5 4 3 8 8 C 1.36908 * 119.99994 * 184.68603 * 7 5 4 9 9 H 1.08001 * 119.99881 * 319.16415 * 8 7 5 10 10 C 1.39022 * 119.99846 * 139.16609 * 8 7 5 11 11 N 1.31384 * 119.99882 * 161.19827 * 10 8 7 12 12 Si 1.86797 * 120.00229 * 341.19777 * 10 8 7 13 13 H 1.48498 * 109.47162 * 92.00231 * 12 10 8 14 14 H 1.48499 * 109.46984 * 212.00689 * 12 10 8 15 15 H 1.48501 * 109.47017 * 332.00323 * 12 10 8 16 16 C 1.46502 * 120.00189 * 4.68906 * 7 5 4 17 17 C 1.47200 * 109.47072 * 94.20394 * 16 7 5 18 18 N 4.51176 * 81.54947 * 345.40144 * 2 1 3 19 19 C 1.40003 * 119.70348 * 0.55979 * 4 3 2 20 20 F 1.35100 * 120.09706 * 179.72055 * 19 4 3 21 21 C 1.38134 * 119.80346 * 359.44220 * 19 4 3 22 22 C 1.38551 * 120.09756 * 0.27698 * 21 19 4 23 23 F 1.35096 * 119.85082 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.46592 * 269.97462 * 1 2 3 25 25 H 1.08991 * 109.47109 * 29.97821 * 1 2 3 26 26 H 1.08997 * 109.46887 * 149.97518 * 1 2 3 27 27 H 1.08002 * 120.05135 * 0.04496 * 3 2 1 28 28 H 0.97003 * 120.00281 * 179.97438 * 11 10 8 29 29 H 1.08995 * 109.47199 * 214.20870 * 16 7 5 30 30 H 1.09007 * 109.46785 * 334.20896 * 16 7 5 31 31 H 1.08001 * 119.94996 * 180.25780 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1939 1.1942 0.0000 4 6 3.5914 1.1941 0.0054 5 6 4.3320 2.4693 0.0122 6 8 5.1528 2.6912 0.8818 7 7 4.0996 3.3887 -0.9455 8 6 4.8536 4.5304 -0.9959 9 1 5.1162 5.0447 -0.0833 10 6 5.2810 5.0275 -2.2218 11 7 5.6710 6.2780 -2.3237 12 14 5.3010 3.9176 -3.7241 13 1 4.0122 4.0448 -4.4507 14 1 6.4160 4.3172 -4.6199 15 1 5.4909 2.5084 -3.2959 16 6 3.0400 3.1666 -1.9325 17 6 1.8006 3.8168 -1.4766 18 7 0.8440 4.3187 -1.1248 19 6 4.2851 -0.0219 -0.0011 20 9 5.6360 -0.0312 -0.0016 21 6 3.5841 -1.2122 -0.0011 22 6 2.1986 -1.2026 -0.0005 23 9 1.5181 -2.3697 0.0000 24 1 -0.3632 -0.0005 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6531 2.1291 0.0007 28 1 5.9696 6.6248 -3.1789 29 1 3.3413 3.5900 -2.8906 30 1 2.8681 2.0962 -2.0463 31 1 4.1169 -2.1517 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176229324.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:47 Heat of formation + Delta-G solvation = -49.179366 kcal Electronic energy + Delta-G solvation = -21688.957877 eV Core-core repulsion = 17993.715864 eV Total energy + Delta-G solvation = -3695.242013 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.14708 -48.81693 -39.95105 -38.11200 -36.44616 -34.84787 -32.71186 -32.44955 -30.96663 -27.95856 -26.82398 -25.61504 -23.51738 -22.19070 -19.59072 -18.75469 -18.20475 -17.45035 -16.85013 -16.64475 -16.10316 -15.80321 -15.40642 -15.24267 -14.78759 -14.59501 -14.24618 -13.88917 -13.51411 -13.49887 -13.26083 -12.94998 -12.64509 -12.58105 -12.30532 -12.12342 -11.93883 -11.75519 -11.54115 -11.40206 -11.05754 -10.57641 -10.15155 -9.45225 -9.11663 -8.98694 -8.56892 -8.20492 -6.61959 -4.27982 0.67973 0.89960 2.79256 2.82920 2.96220 3.04699 3.11762 3.14057 3.44022 3.75911 3.91164 4.06361 4.29364 4.32259 4.48549 4.56014 4.73441 4.90623 5.05611 5.28509 5.33721 5.43405 5.53080 5.59561 5.67668 5.71672 5.94057 5.97172 6.06038 6.62739 7.22525 7.81035 7.95114 8.15721 8.62033 8.97359 9.32610 10.48537 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.019654 B = 0.007005 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.333026 B = 3996.325739 C = 4612.811480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.130 4.130 3 C -0.052 4.052 4 C -0.148 4.148 5 C 0.515 3.485 6 O -0.526 6.526 7 N -0.450 5.450 8 C -0.325 4.325 9 H 0.114 0.886 10 C 0.067 3.933 11 N -0.847 5.847 12 Si 0.860 3.140 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.254 1.254 16 C 0.171 3.829 17 C 0.207 3.793 18 N -0.432 5.432 19 C 0.165 3.835 20 F -0.115 7.115 21 C -0.189 4.189 22 C 0.132 3.868 23 F -0.130 7.130 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.280 0.720 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 -14.480 -1.423 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.131 4.131 3 C -0.071 4.071 4 C -0.153 4.153 5 C 0.303 3.697 6 O -0.404 6.404 7 N -0.172 5.172 8 C -0.451 4.451 9 H 0.131 0.869 10 C -0.142 4.142 11 N -0.481 5.481 12 Si 0.686 3.314 13 H -0.193 1.193 14 H -0.202 1.202 15 H -0.177 1.177 16 C 0.045 3.955 17 C -0.112 4.112 18 N -0.111 5.111 19 C 0.144 3.856 20 F -0.093 7.093 21 C -0.209 4.209 22 C 0.112 3.888 23 F -0.109 7.109 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.454 -13.454 -0.560 15.899 hybrid contribution 0.626 -0.757 -1.084 1.464 sum -7.827 -14.211 -1.644 16.307 Atomic orbital electron populations 1.20733 0.89383 1.03639 1.03181 1.19851 0.97543 0.91237 1.04447 1.21102 0.91829 0.98114 0.96033 1.20501 0.94361 0.94677 1.05780 1.17868 0.84070 0.82305 0.85489 1.90742 1.35535 1.77992 1.36132 1.43481 1.27781 1.18869 1.27084 1.19076 1.30604 0.99121 0.96319 0.86891 1.25418 0.95168 0.95364 0.98223 1.69681 1.39270 1.12384 1.26798 0.87195 0.78407 0.82928 0.82846 1.19302 1.20197 1.17726 1.19658 0.80825 0.99770 0.95272 1.29809 0.94261 0.93467 0.93688 1.81094 1.12829 1.08858 1.08298 1.17149 0.77537 0.92025 0.98852 1.91591 1.27600 1.97140 1.92939 1.20898 0.92954 0.98723 1.08318 1.17170 0.88821 0.81051 1.01782 1.91499 1.79746 1.45985 1.93621 0.90504 0.90627 0.90873 0.84040 0.90972 0.87078 0.87022 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.83 36.01 0.35 -0.74 16 2 C -0.13 -1.59 5.88 -104.61 -0.62 -2.20 16 3 C -0.05 -0.75 7.36 -39.19 -0.29 -1.04 16 4 C -0.15 -2.59 4.68 -104.91 -0.49 -3.08 16 5 C 0.51 11.44 6.81 -12.50 -0.09 11.35 16 6 O -0.53 -13.75 16.81 5.26 0.09 -13.66 16 7 N -0.45 -10.06 2.09 -119.14 -0.25 -10.31 16 8 C -0.32 -8.52 9.31 -14.99 -0.14 -8.66 16 9 H 0.11 3.37 7.93 -52.49 -0.42 2.95 16 10 C 0.07 1.70 5.36 -17.45 -0.09 1.61 16 11 N -0.85 -22.88 13.95 55.50 0.77 -22.11 16 12 Si 0.86 18.01 25.08 -169.99 -4.26 13.74 16 13 H -0.27 -4.99 6.58 56.52 0.37 -4.62 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.25 -5.14 7.11 56.52 0.40 -4.73 16 16 C 0.17 3.09 4.36 -6.83 -0.03 3.06 16 17 C 0.21 3.77 13.25 -20.76 -0.28 3.50 16 18 N -0.43 -8.26 18.54 42.15 0.78 -7.48 16 19 C 0.17 2.64 7.27 -38.96 -0.28 2.36 16 20 F -0.11 -2.05 16.70 2.25 0.04 -2.01 16 21 C -0.19 -2.38 9.99 -39.50 -0.39 -2.78 16 22 C 0.13 1.59 7.25 -39.28 -0.28 1.31 16 23 F -0.13 -1.48 16.46 2.25 0.04 -1.44 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 26 H 0.07 0.62 7.63 -51.93 -0.40 0.23 16 27 H 0.14 2.12 5.44 -52.49 -0.29 1.83 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.11 2.03 3.15 -51.93 -0.16 1.87 16 30 H 0.11 1.61 5.82 -51.92 -0.30 1.30 16 31 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 284.33 15.07 4.28 4.28 Total: -1.00 -29.54 284.33 -3.13 -32.67 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -1.99 Total: 1.63 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.63 Total: 4.69 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 1.31 Total: -39.90 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -4.26 Total: 13.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.54 -3.13 -32.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176229324.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.512 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds