Wall clock time and date at job start Tue Mar 31 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37966 * 119.92293 * 2 1 4 4 C 1.39618 * 119.84143 * 180.23663 * 3 2 1 5 5 C 1.43202 * 120.14768 * 179.74755 * 4 3 2 6 6 N 4.80120 * 134.70195 * 359.74875 * 2 1 3 7 7 C 1.39648 * 119.69976 * 359.46470 * 4 3 2 8 8 C 1.37922 * 119.84627 * 0.28191 * 7 4 3 9 9 C 1.38339 * 119.91971 * 179.72368 * 2 1 3 10 10 S 1.76198 * 119.85225 * 0.02562 * 9 2 1 11 11 O 1.42098 * 106.40212 * 48.55844 * 10 9 2 12 12 O 1.42099 * 106.40432 * 181.48212 * 10 9 2 13 13 N 1.65601 * 107.21479 * 295.01823 * 10 9 2 14 14 C 1.46499 * 120.00283 * 270.00088 * 13 10 9 15 15 C 1.36939 * 119.99711 * 90.00084 * 13 10 9 16 16 H 1.08006 * 119.99973 * 22.92479 * 15 13 10 17 17 C 1.38814 * 120.00025 * 202.92301 * 15 13 10 18 18 N 1.31617 * 119.99844 * 10.86683 * 17 15 13 19 19 Si 1.86796 * 119.99872 * 190.86861 * 17 15 13 20 20 H 1.48502 * 109.47122 * 90.00381 * 19 17 15 21 21 H 1.48498 * 109.47019 * 209.99830 * 19 17 15 22 22 H 1.48502 * 109.47571 * 329.99889 * 19 17 15 23 23 H 1.09004 * 109.46969 * 270.27417 * 1 2 3 24 24 H 1.08998 * 109.47098 * 30.27705 * 1 2 3 25 25 H 1.08997 * 109.47501 * 150.28071 * 1 2 3 26 26 H 1.07995 * 120.08141 * 359.97438 * 3 2 1 27 27 H 1.08006 * 120.07680 * 180.30119 * 7 4 3 28 28 H 1.08010 * 119.92540 * 180.02562 * 8 7 4 29 29 H 1.08995 * 109.47015 * 94.24709 * 14 13 10 30 30 H 1.09001 * 109.46925 * 214.25042 * 14 13 10 31 31 H 1.08997 * 109.47005 * 334.24633 * 14 13 10 32 32 H 0.96996 * 119.99880 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1957 0.0000 4 6 3.5914 1.1938 -0.0050 5 6 4.3124 2.4311 -0.0105 6 7 4.8843 3.4125 -0.0150 7 6 4.2816 -0.0202 0.0014 8 6 3.5809 -1.2082 0.0066 9 6 2.1970 -1.1990 0.0058 10 16 1.3100 -2.7214 0.0124 11 8 0.3288 -2.6186 -1.0103 12 8 2.2853 -3.7540 0.0528 13 7 0.4847 -2.8015 1.4459 14 6 1.1127 -3.4132 2.6196 15 6 -0.7849 -2.2959 1.5341 16 1 -1.3866 -2.1889 0.6437 17 6 -1.2984 -1.9209 2.7681 18 7 -0.5055 -1.8473 3.8160 19 14 -3.1149 -1.5210 2.9412 20 1 -3.8634 -2.7569 3.2838 21 1 -3.2998 -0.5157 4.0185 22 1 -3.6254 -0.9723 1.6592 23 1 -0.3633 0.0049 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5094 26 1 1.6553 2.1311 -0.0004 27 1 5.3616 -0.0288 0.0025 28 1 4.1134 -2.1478 0.0120 29 1 1.5877 -2.6392 3.2223 30 1 0.3538 -3.9220 3.2140 31 1 1.8639 -4.1336 2.2957 32 1 -0.8643 -1.5849 4.6781 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180676251.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:33 Heat of formation + Delta-G solvation = -7.297773 kcal Electronic energy + Delta-G solvation = -19981.345558 eV Core-core repulsion = 16841.760053 eV Total energy + Delta-G solvation = -3139.585504 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.20284 -36.46825 -36.11737 -35.82122 -34.56356 -32.48368 -31.63385 -31.10849 -27.01517 -26.14159 -24.02814 -23.59216 -21.63342 -18.67914 -18.13257 -17.53785 -16.88050 -16.37158 -15.53318 -14.71471 -14.34905 -14.19833 -14.02318 -13.79577 -13.38757 -13.12254 -12.92509 -12.79330 -12.69876 -12.12617 -12.02156 -11.86396 -11.60973 -11.33788 -11.13838 -11.07556 -10.86678 -10.75386 -10.54326 -10.36743 -10.16876 -9.79312 -9.34730 -8.89764 -8.46215 -8.23187 -6.70813 -4.17615 0.72017 1.59913 1.62348 2.65828 2.94834 3.02142 3.08203 3.10885 3.82239 3.91760 3.95579 4.35299 4.62863 4.91392 5.00968 5.04570 5.47034 5.54486 5.77813 5.85598 6.00057 6.16806 6.31084 6.33524 6.40942 6.48908 6.69671 6.77286 6.96494 7.01148 7.09256 7.15791 7.32808 7.46452 8.11619 8.48512 8.95831 10.23756 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018659 B = 0.007181 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.261211 B = 3898.184618 C = 4608.315552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.025 3.975 3 C -0.101 4.101 4 C -0.006 4.006 5 C 0.263 3.737 6 N -0.429 5.429 7 C -0.108 4.108 8 C -0.037 4.037 9 C -0.635 4.635 10 S 2.526 3.474 11 O -0.980 6.980 12 O -1.000 7.000 13 N -0.802 5.802 14 C 0.121 3.879 15 C -0.240 4.240 16 H 0.120 0.880 17 C 0.032 3.968 18 N -0.828 5.828 19 Si 0.923 3.077 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.260 1.260 23 H 0.104 0.896 24 H 0.062 0.938 25 H 0.115 0.885 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 1.471 -1.196 2.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 C -0.123 4.123 4 C -0.009 4.009 5 C -0.052 4.052 6 N -0.105 5.105 7 C -0.129 4.129 8 C -0.056 4.056 9 C -0.712 4.712 10 S 2.623 3.377 11 O -0.969 6.969 12 O -0.990 6.990 13 N -0.626 5.626 14 C -0.025 4.025 15 C -0.389 4.389 16 H 0.138 0.862 17 C -0.181 4.181 18 N -0.468 5.468 19 Si 0.748 3.252 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.184 1.184 23 H 0.122 0.878 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.160 0.840 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.154 2.426 -1.857 3.738 hybrid contribution -0.466 0.873 0.543 1.129 sum 1.688 3.299 -1.314 3.932 Atomic orbital electron populations 1.21940 0.89455 1.05594 1.05596 1.19523 0.96787 0.90829 0.90435 1.21139 0.91672 0.98804 1.00642 1.16100 0.92434 0.86768 1.05612 1.25858 0.93098 0.92892 0.93306 1.81196 1.09040 1.10970 1.09285 1.21153 0.99735 0.91085 1.00955 1.20876 0.92781 0.98234 0.93727 1.32682 1.06136 1.24363 1.08006 1.11972 0.72556 0.75659 0.77496 1.93305 1.58339 1.86829 1.58468 1.93323 1.61742 1.56237 1.87656 1.54103 1.18184 1.61545 1.28742 1.21347 0.97202 0.96494 0.87458 1.20089 0.85738 1.36864 0.96167 0.86233 1.25776 1.00888 0.95558 0.95882 1.70095 1.35799 1.39897 1.00967 0.85943 0.81290 0.78894 0.79086 1.19651 1.20482 1.18389 0.87757 0.91888 0.86688 0.85179 0.85277 0.83963 0.92730 0.90625 0.93607 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 8.15 36.01 0.29 -2.69 16 2 C 0.03 0.46 5.87 -104.68 -0.61 -0.16 16 3 C -0.10 -1.60 9.41 -39.17 -0.37 -1.96 16 4 C -0.01 -0.08 5.73 -106.93 -0.61 -0.70 16 5 C 0.26 3.99 15.33 -22.47 -0.34 3.64 16 6 N -0.43 -7.03 18.54 41.84 0.78 -6.26 16 7 C -0.11 -1.60 9.76 -39.17 -0.38 -1.98 16 8 C -0.04 -0.63 9.53 -39.64 -0.38 -1.01 16 9 C -0.63 -12.16 5.91 -39.49 -0.23 -12.39 16 10 S 2.53 54.20 5.16 -107.50 -0.55 53.65 16 11 O -0.98 -22.66 14.34 -57.17 -0.82 -23.48 16 12 O -1.00 -22.81 15.51 -57.17 -0.89 -23.70 16 13 N -0.80 -17.36 3.31 -66.69 -0.22 -17.58 16 14 C 0.12 2.49 8.92 59.85 0.53 3.02 16 15 C -0.24 -5.20 6.28 -15.06 -0.09 -5.29 16 16 H 0.12 2.55 6.30 -52.48 -0.33 2.22 16 17 C 0.03 0.68 4.97 -17.43 -0.09 0.59 16 18 N -0.83 -18.11 10.59 55.49 0.59 -17.52 16 19 Si 0.92 16.67 29.57 -169.99 -5.03 11.64 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 23 H 0.10 1.90 6.58 -51.93 -0.34 1.56 16 24 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 25 H 0.12 2.24 3.64 -51.93 -0.19 2.05 16 26 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.14 2.26 7.32 -52.48 -0.38 1.88 16 29 H 0.05 1.13 7.40 -51.93 -0.38 0.75 16 30 H 0.08 1.56 7.22 -51.93 -0.37 1.19 16 31 H 0.05 0.88 6.93 -51.93 -0.36 0.52 16 32 H 0.28 5.73 8.31 -40.82 -0.34 5.39 16 LS Contribution 286.09 15.07 4.31 4.31 Total: -1.00 -25.93 286.09 -6.88 -32.81 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -2.76 Total: 5.06 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.29 Total: -18.93 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 1.14 Total: -41.36 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -1.71 Total: -47.18 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.55 Total: 53.65 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.93 -6.88 -32.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180676251.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.515 kcal (2) G-P(sol) polarization free energy of solvation -25.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds