Wall clock time and date at job start Tue Mar 31 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48498 * 109.47286 * 269.99880 * 3 2 1 5 5 H 1.48501 * 109.46979 * 29.99915 * 3 2 1 6 6 H 1.48497 * 109.47111 * 149.99724 * 3 2 1 7 7 C 1.38807 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00112 * 162.06025 * 7 2 1 9 9 N 1.36935 * 120.00619 * 342.06107 * 7 2 1 10 10 C 1.47274 * 121.34901 * 330.84990 * 9 7 2 11 11 C 1.52988 * 108.18376 * 241.52274 * 10 9 7 12 12 N 1.45644 * 110.77385 * 313.27033 * 11 10 9 13 13 C 1.33376 * 124.58949 * 21.90676 * 12 11 10 14 14 O 1.21286 * 118.48714 * 175.65372 * 13 12 11 15 15 C 1.47045 * 121.35826 * 150.86821 * 9 7 2 16 16 H 1.08997 * 109.66911 * 17.36031 * 15 9 7 17 17 C 1.50703 * 109.56762 * 257.06314 * 15 9 7 18 18 C 1.38237 * 120.00987 * 258.03676 * 17 15 9 19 19 C 1.38216 * 120.01422 * 180.29964 * 18 17 15 20 20 C 1.38267 * 120.02293 * 359.44927 * 19 18 17 21 21 C 1.38184 * 120.01728 * 0.29650 * 20 19 18 22 22 C 1.38329 * 120.00616 * 77.80713 * 17 15 9 23 23 Cl 1.73603 * 120.01152 * 359.97438 * 22 17 15 24 24 H 0.96996 * 120.00328 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.72003 * 121.84893 * 10 9 7 26 26 H 1.09000 * 109.75396 * 1.21459 * 10 9 7 27 27 H 1.09009 * 109.21152 * 192.94278 * 11 10 9 28 28 H 1.08998 * 109.18111 * 73.59020 * 11 10 9 29 29 H 0.97004 * 117.70836 * 201.87672 * 12 11 10 30 30 H 1.08006 * 119.99229 * 0.04359 * 18 17 15 31 31 H 1.07997 * 119.98909 * 179.72233 * 19 18 17 32 32 H 1.08007 * 119.98853 * 180.27611 * 20 19 18 33 33 H 1.08002 * 120.00902 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0509 -1.2250 -0.2875 9 7 1.3757 -2.3591 0.3663 10 6 0.2558 -2.3493 1.3227 11 6 0.6612 -3.1810 2.5411 12 7 1.2525 -4.4466 2.1291 13 6 1.7986 -4.6736 0.9336 14 8 2.3312 -5.7450 0.7349 15 6 1.7848 -3.6617 -0.1795 16 1 2.7820 -3.5813 -0.6122 17 6 0.8071 -4.0934 -1.2420 18 6 -0.1550 -5.0426 -0.9515 19 6 -1.0479 -5.4432 -1.9276 20 6 -0.9866 -4.8864 -3.1918 21 6 -0.0287 -3.9337 -3.4818 22 6 0.8691 -3.5365 -2.5066 23 17 2.0728 -2.3395 -2.8702 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6287 -2.7849 0.8578 26 1 0.0431 -1.3255 1.6305 27 1 -0.2210 -3.3785 3.1502 28 1 1.3867 -2.6213 3.1314 29 1 1.2492 -5.1755 2.7691 30 1 -0.2064 -5.4744 0.0371 31 1 -1.7965 -6.1880 -1.7016 32 1 -1.6875 -5.1966 -3.9528 33 1 0.0193 -3.4992 -4.4694 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183533941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:52 Heat of formation + Delta-G solvation = -3.347385 kcal Electronic energy + Delta-G solvation = -20427.333754 eV Core-core repulsion = 17285.875845 eV Total energy + Delta-G solvation = -3141.457909 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55642 -39.68988 -37.76172 -37.08046 -35.55002 -33.89609 -31.90506 -31.50417 -29.98873 -27.92177 -25.30929 -24.16010 -23.15942 -22.84056 -19.93967 -19.11419 -17.99384 -17.88157 -17.36258 -16.70816 -16.47644 -16.08723 -15.86854 -15.38849 -15.03123 -14.73235 -14.43526 -14.28733 -13.84735 -13.34513 -13.12797 -12.99327 -12.77839 -12.48044 -12.27443 -12.21252 -12.19480 -11.94043 -11.89077 -11.53575 -11.02611 -10.46048 -10.01948 -9.78323 -9.46507 -8.72901 -7.86423 -5.30608 0.33438 0.39269 1.45468 1.46964 1.51601 1.57601 1.59746 2.38715 2.49682 2.78893 3.32538 3.50777 3.68011 3.88925 4.07271 4.14803 4.31141 4.42576 4.52703 4.58155 4.63620 4.75347 4.80558 5.01124 5.28066 5.38216 5.46829 5.53403 5.54998 5.70325 5.89329 5.97254 6.33251 6.36488 7.10221 7.23533 7.72423 8.29003 9.19701 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.009692 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.840207 B = 2888.360361 C = 3867.979328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.021 4.021 3 Si 0.944 3.056 4 H -0.293 1.293 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.235 4.235 8 H 0.059 0.941 9 N -0.577 5.577 10 C 0.149 3.851 11 C 0.096 3.904 12 N -0.698 5.698 13 C 0.525 3.475 14 O -0.596 6.596 15 C 0.186 3.814 16 H 0.083 0.917 17 C -0.088 4.088 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.125 4.125 22 C -0.031 4.031 23 Cl -0.070 7.070 24 H 0.251 0.749 25 H 0.015 0.985 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.402 0.598 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 -7.593 -0.438 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.774 3.226 4 H -0.220 1.220 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.365 4.365 8 H 0.076 0.924 9 N -0.299 5.299 10 C 0.023 3.977 11 C -0.029 4.029 12 N -0.348 5.348 13 C 0.311 3.689 14 O -0.478 6.478 15 C 0.076 3.924 16 H 0.101 0.899 17 C -0.092 4.092 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.058 4.058 23 Cl -0.041 7.041 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.238 0.762 30 H 0.134 0.866 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.531 -7.622 -0.674 8.427 hybrid contribution 0.581 1.135 0.093 1.278 sum -2.950 -6.487 -0.581 7.150 Atomic orbital electron populations 1.70083 1.05998 1.25773 1.54142 1.25421 0.95644 1.00089 1.00662 0.85640 0.78588 0.81155 0.77266 1.22032 1.21489 1.19919 1.19053 0.92260 0.84423 1.40716 0.92371 1.44501 1.38338 1.00609 1.46439 1.21197 0.88277 1.00463 0.87754 1.22134 0.98755 0.83643 0.98354 1.45245 1.58815 1.16217 1.14561 1.20472 0.76302 0.87460 0.84655 1.90660 1.47160 1.27349 1.82605 1.19662 0.97235 0.86139 0.89341 0.89927 1.20243 0.99055 0.96391 0.93535 1.21061 0.95495 0.96911 1.00112 1.21477 0.98720 1.00279 0.92991 1.21410 0.98025 0.95744 0.97647 1.21303 0.95020 0.98948 0.99046 1.20930 0.95174 0.94577 0.95122 1.98357 1.55485 1.55687 1.94521 0.93920 0.96674 0.88928 0.87615 0.91682 0.76211 0.86552 0.82624 0.81711 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.86 11.22 21.65 0.24 -48.62 16 2 C -0.02 -1.07 4.95 84.86 0.42 -0.65 16 3 Si 0.94 42.59 29.59 68.60 2.03 44.62 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.23 -11.85 7.80 84.03 0.66 -11.19 16 8 H 0.06 3.03 7.89 -2.91 -0.02 3.01 16 9 N -0.58 -26.63 2.62 -683.60 -1.79 -28.42 16 10 C 0.15 6.20 5.52 86.23 0.48 6.67 16 11 C 0.10 3.00 7.34 86.54 0.63 3.64 16 12 N -0.70 -22.65 5.42 -467.09 -2.53 -25.18 16 13 C 0.53 21.04 5.16 87.79 0.45 21.49 16 14 O -0.60 -26.34 17.76 -3.05 -0.05 -26.40 16 15 C 0.19 8.11 2.27 43.31 0.10 8.21 16 16 H 0.08 3.88 7.34 -2.39 -0.02 3.87 16 17 C -0.09 -3.62 5.15 -19.84 -0.10 -3.72 16 18 C -0.12 -4.16 9.12 22.26 0.20 -3.96 16 19 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 20 C -0.11 -2.97 10.04 22.26 0.22 -2.75 16 21 C -0.12 -4.06 9.83 22.29 0.22 -3.84 16 22 C -0.03 -1.23 6.31 22.32 0.14 -1.09 16 23 Cl -0.07 -2.91 25.75 -2.72 -0.07 -2.98 16 24 H 0.25 13.19 8.31 -92.71 -0.77 12.41 16 25 H 0.02 0.67 8.06 -2.39 -0.02 0.65 16 26 H 0.09 4.31 5.84 -2.39 -0.01 4.30 16 27 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.40 10.71 8.80 -92.71 -0.82 9.90 16 30 H 0.12 4.07 6.67 -2.91 -0.02 4.05 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -62.54 290.59 1.80 -60.74 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.33 Total: 16.53 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 3.65 Total: 9.71 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -4.08 Total: -102.22 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.07 Total: -2.98 kcal Total: -62.54 1.80 -60.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183533941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.394 kcal (2) G-P(sol) polarization free energy of solvation -62.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds