Wall clock time and date at job start Tue Mar 31 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48496 * 109.47188 * 239.99836 * 3 2 1 5 5 H 1.48503 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46862 * 120.00077 * 3 2 1 7 7 C 1.38808 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99695 * 197.11618 * 7 2 1 9 9 N 1.36934 * 120.00224 * 17.11385 * 7 2 1 10 10 C 1.47281 * 121.35050 * 29.39657 * 9 7 2 11 11 C 1.52998 * 108.17569 * 118.47899 * 10 9 7 12 12 N 1.45644 * 110.77311 * 46.73879 * 11 10 9 13 13 C 1.33386 * 124.59200 * 338.09873 * 12 11 10 14 14 O 1.21279 * 118.49120 * 184.31941 * 13 12 11 15 15 C 1.47043 * 121.35555 * 209.38888 * 9 7 2 16 16 H 1.08994 * 109.57000 * 342.56313 * 15 9 7 17 17 C 1.50704 * 109.66541 * 102.86134 * 15 9 7 18 18 C 1.38237 * 120.00786 * 101.68983 * 17 15 9 19 19 C 1.38220 * 120.00771 * 179.74807 * 18 17 15 20 20 C 1.38260 * 120.03008 * 0.55420 * 19 18 17 21 21 C 1.38193 * 120.01202 * 359.69441 * 20 19 18 22 22 C 1.38336 * 120.00380 * 281.96687 * 17 15 9 23 23 Cl 1.73603 * 120.01407 * 359.97438 * 22 17 15 24 24 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.71724 * 358.81694 * 10 9 7 26 26 H 1.09005 * 109.73607 * 238.15423 * 10 9 7 27 27 H 1.08997 * 109.21470 * 286.40395 * 11 10 9 28 28 H 1.09003 * 109.21324 * 167.06757 * 11 10 9 29 29 H 0.97002 * 117.70978 * 158.07428 * 12 11 10 30 30 H 1.07999 * 119.99311 * 359.97438 * 18 17 15 31 31 H 1.08000 * 119.98056 * 180.24872 * 19 18 17 32 32 H 1.07994 * 119.99332 * 179.72674 * 20 19 18 33 33 H 1.08005 * 120.00357 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0544 -1.2229 0.2747 9 7 1.3711 -2.3616 -0.3500 10 6 0.2427 -2.3592 -1.2966 11 6 0.6366 -3.2027 -2.5108 12 7 1.2298 -4.4653 -2.0922 13 6 1.7859 -4.6820 -0.8993 14 8 2.3184 -5.7524 -0.6952 15 6 1.7834 -3.6596 0.2043 16 1 2.7850 -3.5750 0.6258 17 6 0.8168 -4.0815 1.2808 18 6 -0.1524 -5.0285 1.0073 19 6 -1.0356 -5.4192 1.9961 20 6 -0.9577 -4.8549 3.2559 21 6 0.0075 -3.9044 3.5290 22 6 0.8956 -3.5169 2.5413 23 17 2.1083 -2.3228 2.8836 24 1 -0.4850 0.8401 0.0004 25 1 0.0294 -1.3379 -1.6119 26 1 -0.6383 -2.7893 -0.8202 27 1 1.3574 -2.6498 -3.1131 28 1 -0.2510 -3.4047 -3.1104 29 1 1.2195 -5.2003 -2.7251 30 1 -0.2171 -5.4657 0.0219 31 1 -1.7901 -6.1620 1.7831 32 1 -1.6509 -5.1574 4.0268 33 1 0.0685 -3.4639 4.5133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183533953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:55 Heat of formation + Delta-G solvation = 14.182152 kcal Electronic energy + Delta-G solvation = -20425.011647 eV Core-core repulsion = 17284.313876 eV Total energy + Delta-G solvation = -3140.697771 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99974 -38.26624 -36.08968 -35.56687 -33.95244 -32.20302 -30.33713 -30.05951 -28.43622 -26.21321 -23.70697 -22.57317 -21.63064 -21.43116 -18.36034 -17.41753 -16.58084 -16.21325 -15.76153 -15.13970 -14.98509 -14.46720 -14.37465 -13.72316 -13.38398 -13.34738 -12.94210 -12.76742 -12.30551 -11.71879 -11.60643 -11.18742 -11.07059 -10.95795 -10.78715 -10.72035 -10.46616 -10.22562 -10.08058 -9.98623 -9.35452 -8.62102 -8.54716 -8.37747 -8.03037 -6.91650 -5.95128 -3.39012 1.71634 1.76342 2.95200 3.19282 3.31662 3.37274 3.38983 3.85884 4.12098 4.38932 5.13427 5.18694 5.20757 5.28735 5.41662 5.45953 5.77708 5.82105 5.86226 6.03484 6.13736 6.16620 6.23996 6.37713 6.70177 6.82236 6.92183 6.94755 7.17570 7.28409 7.35694 7.67219 7.88371 8.20105 8.75475 8.98152 9.57628 10.14713 11.12554 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.009698 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.650177 B = 2886.555152 C = 3866.669051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.015 3.985 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.565 5.565 10 C 0.145 3.855 11 C 0.086 3.914 12 N -0.714 5.714 13 C 0.523 3.477 14 O -0.572 6.572 15 C 0.186 3.814 16 H 0.105 0.895 17 C -0.061 4.061 18 C -0.104 4.104 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.004 4.004 23 Cl -0.051 7.051 24 H 0.257 0.743 25 H 0.115 0.885 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.384 0.616 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 -6.250 0.728 6.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.185 4.185 3 Si 0.730 3.270 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.286 5.286 10 C 0.019 3.981 11 C -0.039 4.039 12 N -0.364 5.364 13 C 0.309 3.691 14 O -0.451 6.451 15 C 0.075 3.925 16 H 0.122 0.878 17 C -0.066 4.066 18 C -0.123 4.123 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.032 4.032 23 Cl -0.022 7.022 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.218 0.782 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.133 -6.255 1.002 6.684 hybrid contribution 0.202 0.833 -0.210 0.882 sum -1.931 -5.422 0.792 5.810 Atomic orbital electron populations 1.69957 1.05223 1.25986 1.52358 1.25036 0.95213 0.98341 0.99937 0.86396 0.79061 0.83173 0.78374 1.20813 1.21531 1.20689 1.19043 0.92386 0.83306 1.42250 0.91132 1.44441 1.37356 1.00977 1.45791 1.21334 0.89010 1.00888 0.86898 1.22227 0.96945 0.84607 1.00157 1.45426 1.59809 1.15359 1.15775 1.20739 0.76153 0.88260 0.83912 1.90675 1.45951 1.26867 1.81641 1.19776 0.98030 0.86380 0.88268 0.87758 1.20245 0.98277 0.94623 0.93452 1.20913 0.95180 0.97067 0.99156 1.21023 0.99213 1.00356 0.93495 1.20890 0.98669 0.97615 0.96996 1.20938 0.95425 0.98664 0.98688 1.20630 0.94181 0.94130 0.94222 1.98377 1.53897 1.54977 1.94958 0.93283 0.86688 0.95185 0.92224 0.91865 0.78239 0.86533 0.86361 0.86043 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 11.18 55.49 0.62 -22.84 16 2 C 0.01 0.37 4.97 -17.43 -0.09 0.28 16 3 Si 0.90 20.49 29.59 -169.99 -5.03 15.46 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.24 -5.96 7.84 -15.06 -0.12 -6.07 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 9 N -0.57 -12.89 2.62 -167.41 -0.44 -13.32 16 10 C 0.14 3.04 5.52 -3.62 -0.02 3.02 16 11 C 0.09 1.44 7.34 -4.50 -0.03 1.41 16 12 N -0.71 -12.24 5.42 -61.32 -0.33 -12.57 16 13 C 0.52 10.62 5.16 -11.73 -0.06 10.56 16 14 O -0.57 -12.75 17.76 5.56 0.10 -12.66 16 15 C 0.19 3.99 2.27 -70.06 -0.16 3.83 16 16 H 0.10 2.35 7.32 -51.93 -0.38 1.97 16 17 C -0.06 -1.26 5.17 -104.58 -0.54 -1.80 16 18 C -0.10 -1.93 9.13 -39.59 -0.36 -2.29 16 19 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 20 C -0.12 -1.89 10.05 -39.59 -0.40 -2.29 16 21 C -0.12 -2.04 9.83 -39.55 -0.39 -2.43 16 22 C 0.00 -0.08 6.31 -39.50 -0.25 -0.33 16 23 Cl -0.05 -1.05 25.77 -51.86 -1.34 -2.38 16 24 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.12 2.66 5.83 -51.93 -0.30 2.36 16 26 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.38 5.64 8.80 -40.82 -0.36 5.28 16 30 H 0.12 2.13 6.67 -52.49 -0.35 1.78 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -28.46 290.63 -8.32 -36.78 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.47 Total: 5.63 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.81 Total: 1.52 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.15 Total: -48.73 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.10 Total: -12.66 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.34 Total: -2.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.46 -8.32 -36.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183533953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.966 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds