Wall clock time and date at job start Tue Mar 31 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48496 * 109.47188 * 239.99836 * 3 2 1 5 5 H 1.48503 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46862 * 120.00077 * 3 2 1 7 7 C 1.38808 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99695 * 197.11618 * 7 2 1 9 9 N 1.36934 * 120.00224 * 17.11385 * 7 2 1 10 10 C 1.47281 * 121.35050 * 29.39657 * 9 7 2 11 11 C 1.52998 * 108.17569 * 118.47899 * 10 9 7 12 12 N 1.45644 * 110.77311 * 46.73879 * 11 10 9 13 13 C 1.33386 * 124.59200 * 338.09873 * 12 11 10 14 14 O 1.21279 * 118.49120 * 184.31941 * 13 12 11 15 15 C 1.47043 * 121.35555 * 209.38888 * 9 7 2 16 16 H 1.08994 * 109.57000 * 342.56313 * 15 9 7 17 17 C 1.50704 * 109.66541 * 102.86134 * 15 9 7 18 18 C 1.38237 * 120.00786 * 101.68983 * 17 15 9 19 19 C 1.38220 * 120.00771 * 179.74807 * 18 17 15 20 20 C 1.38260 * 120.03008 * 0.55420 * 19 18 17 21 21 C 1.38193 * 120.01202 * 359.69441 * 20 19 18 22 22 C 1.38336 * 120.00380 * 281.96687 * 17 15 9 23 23 Cl 1.73603 * 120.01407 * 359.97438 * 22 17 15 24 24 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.71724 * 358.81694 * 10 9 7 26 26 H 1.09005 * 109.73607 * 238.15423 * 10 9 7 27 27 H 1.08997 * 109.21470 * 286.40395 * 11 10 9 28 28 H 1.09003 * 109.21324 * 167.06757 * 11 10 9 29 29 H 0.97002 * 117.70978 * 158.07428 * 12 11 10 30 30 H 1.07999 * 119.99311 * 359.97438 * 18 17 15 31 31 H 1.08000 * 119.98056 * 180.24872 * 19 18 17 32 32 H 1.07994 * 119.99332 * 179.72674 * 20 19 18 33 33 H 1.08005 * 120.00357 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0544 -1.2229 0.2747 9 7 1.3711 -2.3616 -0.3500 10 6 0.2427 -2.3592 -1.2966 11 6 0.6366 -3.2027 -2.5108 12 7 1.2298 -4.4653 -2.0922 13 6 1.7859 -4.6820 -0.8993 14 8 2.3184 -5.7524 -0.6952 15 6 1.7834 -3.6596 0.2043 16 1 2.7850 -3.5750 0.6258 17 6 0.8168 -4.0815 1.2808 18 6 -0.1524 -5.0285 1.0073 19 6 -1.0356 -5.4192 1.9961 20 6 -0.9577 -4.8549 3.2559 21 6 0.0075 -3.9044 3.5290 22 6 0.8956 -3.5169 2.5413 23 17 2.1083 -2.3228 2.8836 24 1 -0.4850 0.8401 0.0004 25 1 0.0294 -1.3379 -1.6119 26 1 -0.6383 -2.7893 -0.8202 27 1 1.3574 -2.6498 -3.1131 28 1 -0.2510 -3.4047 -3.1104 29 1 1.2195 -5.2003 -2.7251 30 1 -0.2171 -5.4657 0.0219 31 1 -1.7901 -6.1620 1.7831 32 1 -1.6509 -5.1574 4.0268 33 1 0.0685 -3.4639 4.5133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183533953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:54 Heat of formation + Delta-G solvation = -3.464687 kcal Electronic energy + Delta-G solvation = -20425.776871 eV Core-core repulsion = 17284.313876 eV Total energy + Delta-G solvation = -3141.462996 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55461 -39.69058 -37.76094 -37.08398 -35.55007 -33.89572 -31.90323 -31.50512 -29.98788 -27.92071 -25.31043 -24.15719 -23.15934 -22.84122 -19.93900 -19.11387 -17.99282 -17.88082 -17.36275 -16.71140 -16.47850 -16.08812 -15.86864 -15.38550 -15.02658 -14.73338 -14.43739 -14.28615 -13.84911 -13.33762 -13.13126 -12.97850 -12.77346 -12.48426 -12.27148 -12.21787 -12.19369 -11.95839 -11.89687 -11.53696 -11.02248 -10.46001 -10.01908 -9.78331 -9.46651 -8.72690 -7.86127 -5.31283 0.33371 0.39226 1.45320 1.48804 1.51419 1.55694 1.59647 2.38745 2.49631 2.78855 3.32707 3.50853 3.68199 3.88971 4.07296 4.14793 4.31290 4.42551 4.52705 4.58240 4.63698 4.75460 4.80548 5.01128 5.28410 5.38189 5.46837 5.53418 5.55474 5.69897 5.89410 5.97235 6.33293 6.36780 7.10323 7.23537 7.72369 8.29001 9.19664 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.009698 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.650177 B = 2886.555152 C = 3866.669051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.021 4.021 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.059 0.941 9 N -0.577 5.577 10 C 0.148 3.852 11 C 0.096 3.904 12 N -0.699 5.699 13 C 0.525 3.475 14 O -0.596 6.596 15 C 0.186 3.814 16 H 0.083 0.917 17 C -0.088 4.088 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.031 4.031 23 Cl -0.070 7.070 24 H 0.252 0.748 25 H 0.093 0.907 26 H 0.015 0.985 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.402 0.598 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -7.554 0.612 8.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.366 4.366 8 H 0.076 0.924 9 N -0.299 5.299 10 C 0.023 3.977 11 C -0.029 4.029 12 N -0.348 5.348 13 C 0.311 3.689 14 O -0.478 6.478 15 C 0.076 3.924 16 H 0.101 0.899 17 C -0.092 4.092 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.058 4.058 23 Cl -0.041 7.041 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.033 0.967 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.238 0.762 30 H 0.134 0.866 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.543 -7.578 0.855 8.409 hybrid contribution 0.597 1.124 -0.116 1.278 sum -2.946 -6.454 0.739 7.133 Atomic orbital electron populations 1.70068 1.05984 1.25837 1.54140 1.25438 0.95674 1.00098 1.00587 0.85685 0.77983 0.80750 0.78079 1.20362 1.21895 1.21225 1.19031 0.92002 0.84317 1.41203 0.92368 1.44488 1.37607 1.00829 1.46958 1.21210 0.88176 1.00406 0.87916 1.22136 0.98728 0.83716 0.98315 1.45248 1.58494 1.16065 1.15038 1.20477 0.76325 0.87568 0.84525 1.90658 1.47290 1.27586 1.82233 1.19661 0.97308 0.86152 0.89257 0.89945 1.20243 0.99012 0.96389 0.93568 1.21059 0.95466 0.96956 1.00090 1.21478 0.98801 1.00275 0.92913 1.21409 0.97928 0.95714 0.97769 1.21305 0.95077 0.99005 0.98918 1.20931 0.95103 0.94618 0.95171 1.98358 1.54842 1.55885 1.94979 0.93905 0.88866 0.96667 0.91720 0.87630 0.76220 0.86557 0.82626 0.81705 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.88 11.18 21.65 0.24 -48.64 16 2 C -0.02 -1.06 4.97 84.86 0.42 -0.64 16 3 Si 0.95 42.64 29.59 68.60 2.03 44.67 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.24 -11.90 7.84 84.03 0.66 -11.25 16 8 H 0.06 3.03 7.89 -2.91 -0.02 3.01 16 9 N -0.58 -26.65 2.62 -683.56 -1.79 -28.44 16 10 C 0.15 6.20 5.52 86.23 0.48 6.67 16 11 C 0.10 3.01 7.34 86.54 0.63 3.64 16 12 N -0.70 -22.70 5.42 -467.07 -2.53 -25.23 16 13 C 0.52 21.06 5.16 87.79 0.45 21.52 16 14 O -0.60 -26.36 17.76 -3.03 -0.05 -26.42 16 15 C 0.19 8.12 2.27 43.32 0.10 8.22 16 16 H 0.08 3.88 7.32 -2.39 -0.02 3.86 16 17 C -0.09 -3.62 5.17 -19.84 -0.10 -3.72 16 18 C -0.12 -4.16 9.13 22.27 0.20 -3.96 16 19 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 20 C -0.11 -2.97 10.05 22.26 0.22 -2.74 16 21 C -0.12 -4.05 9.83 22.29 0.22 -3.83 16 22 C -0.03 -1.23 6.31 22.32 0.14 -1.09 16 23 Cl -0.07 -2.91 25.77 -2.72 -0.07 -2.98 16 24 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 25 H 0.09 4.35 5.83 -2.39 -0.01 4.34 16 26 H 0.02 0.67 8.07 -2.38 -0.02 0.65 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.40 10.74 8.80 -92.71 -0.82 9.92 16 30 H 0.12 4.07 6.67 -2.91 -0.02 4.05 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -62.47 290.63 1.80 -60.67 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.33 Total: 16.67 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 3.65 Total: 9.71 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.08 Total: -102.31 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.07 Total: -2.98 kcal Total: -62.47 1.80 -60.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183533953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.204 kcal (2) G-P(sol) polarization free energy of solvation -62.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds