Wall clock time and date at job start Tue Mar 31 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 6 6 C 1.36941 * 119.99583 * 85.00384 * 5 3 2 7 7 H 1.07999 * 120.00378 * 359.97438 * 6 5 3 8 8 C 1.38814 * 119.99657 * 179.97438 * 6 5 3 9 9 N 1.31616 * 120.00233 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47101 * 89.99948 * 10 8 6 12 12 H 1.48499 * 109.46824 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.46857 * 329.99662 * 10 8 6 14 14 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 15 15 N 1.29027 * 124.91271 * 254.71623 * 14 3 2 16 16 C 1.31789 * 117.12030 * 179.81122 * 15 14 3 17 17 C 1.50705 * 122.74569 * 180.22272 * 16 15 14 18 18 F 1.39897 * 109.46875 * 185.24539 * 17 16 15 19 19 F 1.39893 * 109.47598 * 305.24890 * 17 16 15 20 20 F 1.39900 * 109.46829 * 65.25116 * 17 16 15 21 21 C 1.33628 * 114.50272 * 0.47990 * 16 15 14 22 22 S 1.70971 * 124.92051 * 75.02380 * 14 3 2 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96999 * 120.00274 * 264.99733 * 5 3 2 29 29 H 0.97001 * 119.99757 * 180.02562 * 9 8 6 30 30 H 1.08004 * 126.04220 * 179.78636 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4156 2.6734 -1.3689 7 1 -0.2743 2.6446 -0.5385 8 6 0.0486 3.2944 -2.5549 9 7 0.8896 3.3300 -3.5668 10 14 -1.6383 4.0807 -2.7143 11 1 -1.5656 5.5000 -2.2834 12 1 -2.0832 4.0153 -4.1296 13 1 -2.6071 3.3520 -1.8567 14 6 3.5419 1.4443 0.1238 15 7 4.1943 1.7536 1.1931 16 6 5.5096 1.6994 1.1312 17 6 6.3953 2.0293 2.3051 18 9 7.7346 1.9976 1.9022 19 9 6.0817 3.3066 2.7815 20 9 6.1917 1.0895 3.3213 21 6 5.9938 1.3332 -0.0592 22 16 4.6281 1.0440 -1.1343 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.2720 2.1231 -1.9978 29 1 0.6332 3.7642 -4.3954 30 1 7.0377 1.2318 -0.3168 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185946848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:08 Heat of formation + Delta-G solvation = -99.508196 kcal Electronic energy + Delta-G solvation = -19636.339152 eV Core-core repulsion = 15950.898363 eV Total energy + Delta-G solvation = -3685.440789 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.15655 -47.71851 -47.58204 -39.82165 -36.37234 -32.65136 -31.08234 -29.89276 -27.02735 -26.73494 -23.60656 -22.77644 -20.64654 -20.12311 -18.90050 -18.51457 -18.13488 -17.37457 -16.59596 -15.10669 -14.92461 -14.69726 -14.49695 -14.25989 -14.06425 -14.03750 -13.79318 -13.77313 -13.35491 -13.25096 -12.96278 -12.72598 -11.83928 -11.42166 -11.20582 -11.03488 -10.93589 -10.83957 -10.38347 -10.20942 -9.73549 -9.58520 -9.38188 -9.13731 -8.93662 -7.22840 -5.93451 -3.23952 0.60327 1.27634 1.71639 2.48267 2.62352 3.36412 3.41979 3.43191 3.56507 4.03852 4.39166 4.41486 4.62563 5.08395 5.20287 5.35990 5.52738 5.71499 5.77975 5.94548 6.17756 6.33597 6.45983 6.50801 6.79956 7.15462 7.56059 7.62986 8.21584 9.33929 9.81076 10.17225 11.28384 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.025707 B = 0.004745 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.954460 B = 5899.515980 C = 6038.246850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.243 3.757 4 H 0.084 0.916 5 N -0.715 5.715 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.007 4.007 9 N -0.928 5.928 10 Si 0.910 3.090 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.077 3.923 15 N -0.458 5.458 16 C -0.021 4.021 17 C 0.549 3.451 18 F -0.174 7.174 19 F -0.168 7.168 20 F -0.171 7.171 21 C -0.236 4.236 22 S 0.206 5.794 23 H 0.038 0.962 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.384 0.616 29 H 0.258 0.742 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 -6.308 7.137 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.130 3.870 4 H 0.101 0.899 5 N -0.358 5.358 6 C -0.373 4.373 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.574 5.574 10 Si 0.740 3.260 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.204 1.204 14 C -0.202 4.202 15 N -0.172 5.172 16 C -0.157 4.157 17 C 0.492 3.508 18 F -0.155 7.155 19 F -0.149 7.149 20 F -0.152 7.152 21 C -0.378 4.378 22 S 0.465 5.535 23 H 0.057 0.943 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.219 0.781 29 H 0.068 0.932 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.596 -6.371 6.553 13.252 hybrid contribution 0.167 0.817 0.526 0.986 sum 9.763 -5.555 7.079 13.277 Atomic orbital electron populations 1.21773 0.94722 1.00161 1.03722 1.22175 0.97745 0.96921 1.00418 1.19031 0.80808 0.94172 0.93008 0.89870 1.42498 1.17260 1.66456 1.09603 1.19214 0.90954 1.28680 0.98421 0.90252 1.24785 0.98504 1.00849 0.96241 1.69655 1.35423 1.48289 1.04078 0.86158 0.83430 0.79418 0.77006 1.21529 1.21657 1.20421 1.28128 1.03110 0.98481 0.90510 1.65831 1.04609 1.17664 1.29066 1.19882 0.91427 1.10254 0.94171 1.17251 0.77486 0.74812 0.81284 1.93171 1.35412 1.96301 1.90632 1.93230 1.92669 1.39781 1.89221 1.93217 1.94774 1.65257 1.61974 1.26991 1.05849 1.08437 0.96545 1.84360 0.94344 1.59423 1.15404 0.94316 0.89329 0.93643 0.93258 0.92316 0.78095 0.93172 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.18 37.16 0.34 -2.16 16 2 C -0.13 -2.23 5.59 -26.73 -0.15 -2.38 16 3 C 0.24 4.72 2.94 -69.08 -0.20 4.52 16 4 H 0.08 1.70 8.08 -51.93 -0.42 1.28 16 5 N -0.72 -16.56 5.05 -54.55 -0.28 -16.84 16 6 C -0.24 -6.15 7.75 -15.06 -0.12 -6.27 16 7 H 0.08 1.95 7.32 -52.49 -0.38 1.56 16 8 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 9 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 10 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.08 1.39 6.30 -13.46 -0.08 1.30 16 15 N -0.46 -8.29 10.53 -8.06 -0.08 -8.37 16 16 C -0.02 -0.33 6.17 -84.22 -0.52 -0.85 16 17 C 0.55 7.85 3.56 36.01 0.13 7.97 16 18 F -0.17 -2.16 16.42 2.25 0.04 -2.12 16 19 F -0.17 -2.58 17.30 2.25 0.04 -2.54 16 20 F -0.17 -2.46 17.30 2.25 0.04 -2.42 16 21 C -0.24 -3.18 10.63 29.12 0.31 -2.87 16 22 S 0.21 3.10 22.28 -107.50 -2.39 0.71 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.09 1.77 5.99 -51.93 -0.31 1.46 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.38 9.33 6.98 -40.82 -0.29 9.04 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 30 H 0.19 1.87 7.70 -52.48 -0.40 1.47 16 LS Contribution 287.39 15.07 4.33 4.33 Total: -1.00 -27.80 287.39 -5.63 -33.43 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -2.63 Total: 4.25 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -0.39 Total: -1.03 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.36 Total: -50.77 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.11 Total: -7.09 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.39 Total: 0.71 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.80 -5.63 -33.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185946848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.080 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds