Wall clock time and date at job start Tue Mar 31 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 6 6 C 1.36941 * 119.99583 * 85.00384 * 5 3 2 7 7 H 1.07999 * 120.00378 * 359.97438 * 6 5 3 8 8 C 1.38814 * 119.99657 * 179.97438 * 6 5 3 9 9 N 1.31616 * 120.00233 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47101 * 89.99948 * 10 8 6 12 12 H 1.48499 * 109.46824 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.46857 * 329.99662 * 10 8 6 14 14 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 15 15 N 1.29027 * 124.91271 * 254.71623 * 14 3 2 16 16 C 1.31789 * 117.12030 * 179.81122 * 15 14 3 17 17 C 1.50705 * 122.74569 * 180.22272 * 16 15 14 18 18 F 1.39897 * 109.46875 * 185.24539 * 17 16 15 19 19 F 1.39893 * 109.47598 * 305.24890 * 17 16 15 20 20 F 1.39900 * 109.46829 * 65.25116 * 17 16 15 21 21 C 1.33628 * 114.50272 * 0.47990 * 16 15 14 22 22 S 1.70971 * 124.92051 * 75.02380 * 14 3 2 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96999 * 120.00274 * 264.99733 * 5 3 2 29 29 H 0.97001 * 119.99757 * 180.02562 * 9 8 6 30 30 H 1.08004 * 126.04220 * 179.78636 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4156 2.6734 -1.3689 7 1 -0.2743 2.6446 -0.5385 8 6 0.0486 3.2944 -2.5549 9 7 0.8896 3.3300 -3.5668 10 14 -1.6383 4.0807 -2.7143 11 1 -1.5656 5.5000 -2.2834 12 1 -2.0832 4.0153 -4.1296 13 1 -2.6071 3.3520 -1.8567 14 6 3.5419 1.4443 0.1238 15 7 4.1943 1.7536 1.1931 16 6 5.5096 1.6994 1.1312 17 6 6.3953 2.0293 2.3051 18 9 7.7346 1.9976 1.9022 19 9 6.0817 3.3066 2.7815 20 9 6.1917 1.0895 3.3213 21 6 5.9938 1.3332 -0.0592 22 16 4.6281 1.0440 -1.1343 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.2720 2.1231 -1.9978 29 1 0.6332 3.7642 -4.3954 30 1 7.0377 1.2318 -0.3168 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185946848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:08 Heat of formation + Delta-G solvation = -116.562909 kcal Electronic energy + Delta-G solvation = -19637.078699 eV Core-core repulsion = 15950.898363 eV Total energy + Delta-G solvation = -3686.180336 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.26788 -48.79583 -48.73287 -41.10251 -37.96412 -34.45807 -32.35650 -31.61580 -28.48149 -27.98864 -25.31050 -24.21358 -22.04826 -21.43254 -20.12539 -19.64229 -19.31842 -19.17517 -17.81622 -16.78317 -16.37240 -15.94744 -15.77846 -15.57879 -15.47375 -15.17311 -14.95241 -14.90128 -14.86731 -14.66029 -14.45881 -14.03002 -13.33933 -12.99206 -12.79262 -12.60935 -12.53310 -12.37462 -12.03699 -11.90739 -11.44011 -11.03368 -10.88791 -10.60438 -10.22820 -9.12520 -7.94209 -5.24162 -0.60623 0.08551 0.45917 1.19898 1.47775 1.51633 1.52623 1.60117 2.37996 2.57723 2.91660 3.26794 3.27819 3.41725 3.85801 4.01664 4.05107 4.31985 4.34392 4.56749 4.71440 4.86821 5.06012 5.16588 5.38885 5.55733 5.69786 6.23673 6.36046 7.33633 7.95275 8.23403 9.28762 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.025707 B = 0.004745 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.954460 B = 5899.515980 C = 6038.246850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.243 3.757 4 H 0.068 0.932 5 N -0.726 5.726 6 C -0.229 4.229 7 H 0.084 0.916 8 C -0.066 4.066 9 N -0.965 5.965 10 Si 0.966 3.034 11 H -0.293 1.293 12 H -0.297 1.297 13 H -0.266 1.266 14 C 0.044 3.956 15 N -0.475 5.475 16 C -0.048 4.048 17 C 0.556 3.444 18 F -0.160 7.160 19 F -0.177 7.177 20 F -0.172 7.172 21 C -0.206 4.206 22 S 0.235 5.765 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.377 0.623 29 H 0.252 0.748 30 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.182 -7.249 7.788 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.132 3.868 4 H 0.086 0.914 5 N -0.369 5.369 6 C -0.361 4.361 7 H 0.102 0.898 8 C -0.259 4.259 9 N -0.616 5.616 10 Si 0.795 3.205 11 H -0.220 1.220 12 H -0.224 1.224 13 H -0.191 1.191 14 C -0.235 4.235 15 N -0.190 5.190 16 C -0.183 4.183 17 C 0.499 3.501 18 F -0.141 7.141 19 F -0.158 7.158 20 F -0.153 7.153 21 C -0.347 4.347 22 S 0.493 5.507 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.210 0.790 29 H 0.061 0.939 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 10.581 -7.335 7.265 14.783 hybrid contribution 0.007 1.026 0.412 1.106 sum 10.587 -6.309 7.676 14.520 Atomic orbital electron populations 1.21710 0.94745 1.01360 1.02239 1.22041 0.97613 0.95251 1.01420 1.19017 0.82284 0.94849 0.90692 0.91406 1.42576 1.16548 1.66823 1.10925 1.19498 0.91776 1.26754 0.98024 0.89833 1.25449 1.01515 1.02557 0.96403 1.69783 1.37012 1.50337 1.04424 0.85253 0.80425 0.78271 0.76516 1.22025 1.22374 1.19081 1.27666 1.02891 1.00945 0.92005 1.65761 1.06009 1.17453 1.29731 1.20095 0.90863 1.11827 0.95524 1.17065 0.77825 0.74383 0.80844 1.93199 1.34216 1.96213 1.90452 1.93214 1.92835 1.40428 1.89312 1.93215 1.94852 1.65252 1.62024 1.27454 1.07202 1.05036 0.95041 1.84275 0.93946 1.58403 1.14107 0.91841 0.92465 0.93309 0.91230 0.92141 0.78983 0.93924 0.75737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.18 71.98 0.66 -4.07 16 2 C -0.12 -4.01 5.59 30.60 0.17 -3.84 16 3 C 0.24 9.37 2.94 44.25 0.13 9.50 16 4 H 0.07 2.79 8.08 -2.39 -0.02 2.77 16 5 N -0.73 -33.82 5.05 -326.49 -1.65 -35.47 16 6 C -0.23 -11.72 7.75 84.03 0.65 -11.07 16 7 H 0.08 4.11 7.32 -2.91 -0.02 4.09 16 8 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 9 N -0.97 -55.75 13.06 21.65 0.28 -55.47 16 10 Si 0.97 44.07 29.55 68.60 2.03 46.10 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 14 C 0.04 1.53 6.30 88.52 0.56 2.09 16 15 N -0.48 -16.65 10.53 -179.41 -1.89 -18.54 16 16 C -0.05 -1.41 6.17 41.52 0.26 -1.15 16 17 C 0.56 14.75 3.56 71.24 0.25 15.01 16 18 F -0.16 -3.50 16.42 44.97 0.74 -2.76 16 19 F -0.18 -5.21 17.30 44.97 0.78 -4.43 16 20 F -0.17 -4.65 17.30 44.97 0.78 -3.87 16 21 C -0.21 -4.90 10.63 66.77 0.71 -4.19 16 22 S 0.24 6.63 22.28 -56.49 -1.26 5.37 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 2.26 5.99 -2.39 -0.01 2.25 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.38 18.47 6.98 -92.71 -0.65 17.82 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.23 3.45 7.70 -2.91 -0.02 3.42 16 Total: -1.00 -59.60 287.39 4.21 -55.38 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.55 Total: 14.54 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 3.86 Total: -0.85 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.26 Total: -109.48 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 2.29 Total: -11.06 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -1.26 Total: 5.37 kcal Total: -59.60 4.21 -55.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185946848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.180 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds