Wall clock time and date at job start Tue Mar 31 2020 01:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 H 1.08996 * 109.47486 * 305.00558 * 3 2 1 5 5 N 1.46508 * 109.46797 * 65.00637 * 3 2 1 6 6 C 1.36936 * 119.99739 * 274.99406 * 5 3 2 7 7 H 1.08001 * 119.99988 * 0.02562 * 6 5 3 8 8 C 1.38810 * 119.99701 * 180.02562 * 6 5 3 9 9 N 1.31622 * 119.99985 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99827 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47064 * 59.99853 * 10 8 6 12 12 H 1.48506 * 109.47057 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46882 * 299.99694 * 10 8 6 14 14 C 1.50709 * 109.47103 * 185.00144 * 3 2 1 15 15 N 1.29023 * 124.91372 * 105.00024 * 14 3 2 16 16 C 1.31784 * 117.12236 * 179.97438 * 15 14 3 17 17 C 1.50698 * 122.74831 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.47368 * 90.00055 * 17 16 15 19 19 F 1.39898 * 109.47297 * 210.00328 * 17 16 15 20 20 F 1.39904 * 109.46967 * 330.00083 * 17 16 15 21 21 C 1.33639 * 114.50230 * 0.02562 * 16 15 14 22 22 S 1.70979 * 124.91513 * 285.00373 * 14 3 2 23 23 H 1.09001 * 109.46838 * 299.99308 * 1 2 3 24 24 H 1.08997 * 109.47197 * 59.99234 * 1 2 3 25 25 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46838 * 240.00692 * 2 1 3 27 27 H 1.09001 * 109.47684 * 120.00776 * 2 1 3 28 28 H 0.97003 * 119.99823 * 95.00125 * 5 3 2 29 29 H 0.97005 * 119.99494 * 179.97438 * 9 8 6 30 30 H 1.07997 * 126.03698 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6525 2.0974 1.2520 6 6 0.4157 2.6734 1.3690 7 1 -0.2742 2.6446 0.5386 8 6 0.0488 3.2944 2.5550 9 7 0.8894 3.3290 3.5672 10 14 -1.6387 4.0795 2.7150 11 1 -2.6864 3.0470 2.5115 12 1 -1.7833 4.6705 4.0697 13 1 -1.7880 5.1448 1.6912 14 6 3.5420 1.4443 -0.1239 15 7 4.1943 1.7487 -1.1947 16 6 5.5097 1.6995 -1.1313 17 6 6.3953 2.0287 -2.3053 18 9 6.6984 3.3943 -2.2924 19 9 7.5786 1.2874 -2.2191 20 9 5.7308 1.7097 -3.4945 21 6 5.9939 1.3328 0.0591 22 16 4.6282 1.0434 1.1342 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8935 -0.5139 0.8899 28 1 2.2721 2.1230 1.9979 29 1 0.6331 3.7633 4.3959 30 1 7.0378 1.2316 0.3166 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185946863.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:11 Heat of formation + Delta-G solvation = -98.722834 kcal Electronic energy + Delta-G solvation = -19635.621182 eV Core-core repulsion = 15950.214449 eV Total energy + Delta-G solvation = -3685.406733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.14398 -47.70011 -47.57488 -39.82104 -36.37056 -32.65029 -31.08407 -29.89206 -27.02367 -26.72787 -23.60602 -22.77513 -20.64232 -20.13328 -18.88838 -18.52345 -18.07822 -17.37636 -16.59819 -15.11065 -14.95178 -14.69520 -14.42682 -14.26755 -14.06726 -14.03971 -13.77963 -13.75893 -13.39205 -13.24293 -12.95386 -12.71760 -11.83768 -11.41926 -11.20364 -11.04212 -10.91816 -10.83688 -10.38047 -10.24339 -9.72926 -9.58295 -9.38141 -9.13226 -8.93294 -7.22806 -5.93165 -3.23738 0.60300 1.27623 1.71670 2.48164 2.62779 3.36959 3.42038 3.42311 3.57054 4.05582 4.39462 4.40889 4.62683 5.07196 5.20078 5.36042 5.52832 5.71486 5.78065 5.94628 6.17805 6.33695 6.46046 6.50837 6.79995 7.15441 7.55718 7.63136 8.21873 9.34096 9.81209 10.17403 11.28586 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.004745 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.766023 B = 5900.152737 C = 6038.817878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.243 3.757 4 H 0.084 0.916 5 N -0.715 5.715 6 C -0.243 4.243 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.928 5.928 10 Si 0.910 3.090 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.077 3.923 15 N -0.458 5.458 16 C -0.022 4.022 17 C 0.548 3.452 18 F -0.172 7.172 19 F -0.174 7.174 20 F -0.166 7.166 21 C -0.235 4.235 22 S 0.207 5.793 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.384 0.616 29 H 0.259 0.741 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.178 -6.286 -7.129 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.130 3.870 4 H 0.101 0.899 5 N -0.358 5.358 6 C -0.373 4.373 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.575 5.575 10 Si 0.740 3.260 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.210 1.210 14 C -0.203 4.203 15 N -0.171 5.171 16 C -0.158 4.158 17 C 0.491 3.509 18 F -0.153 7.153 19 F -0.156 7.156 20 F -0.147 7.147 21 C -0.377 4.377 22 S 0.465 5.535 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.219 0.781 29 H 0.069 0.931 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.581 -6.348 -6.541 13.224 hybrid contribution 0.164 0.812 -0.525 0.980 sum 9.745 -5.537 -7.065 13.249 Atomic orbital electron populations 1.21773 0.94729 1.00169 1.03716 1.22177 0.97745 0.96928 1.00412 1.19032 0.80802 0.94168 0.93007 0.89867 1.42491 1.17243 1.66471 1.09599 1.19166 0.90967 1.28778 0.98430 0.90310 1.24783 0.98485 1.00836 0.96239 1.69649 1.35469 1.48290 1.04058 0.86232 0.83533 0.79306 0.76917 1.20934 1.21597 1.21040 1.28131 1.03113 0.98558 0.90455 1.65848 1.04588 1.17713 1.28957 1.19873 0.91400 1.10247 0.94246 1.17267 0.77702 0.74450 0.81526 1.93231 1.93461 1.32019 1.96586 1.93186 1.48997 1.77063 1.96312 1.93221 1.80399 1.92441 1.48621 1.26958 1.05801 1.08408 0.96572 1.84361 0.94323 1.59362 1.15452 0.89339 0.93626 0.94315 0.93257 0.92322 0.78094 0.93118 0.79735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.18 37.16 0.34 -2.17 16 2 C -0.13 -2.23 5.59 -26.73 -0.15 -2.38 16 3 C 0.24 4.72 2.94 -69.07 -0.20 4.52 16 4 H 0.08 1.70 8.08 -51.93 -0.42 1.28 16 5 N -0.72 -16.56 5.05 -54.54 -0.28 -16.84 16 6 C -0.24 -6.17 7.75 -15.06 -0.12 -6.29 16 7 H 0.08 1.93 7.32 -52.49 -0.38 1.54 16 8 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 9 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 10 Si 0.91 21.19 29.55 -169.99 -5.02 16.16 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.08 1.38 6.30 -13.45 -0.08 1.30 16 15 N -0.46 -8.28 10.34 -8.05 -0.08 -8.36 16 16 C -0.02 -0.34 6.20 -84.22 -0.52 -0.86 16 17 C 0.55 7.83 3.49 36.00 0.13 7.96 16 18 F -0.17 -2.51 17.30 2.25 0.04 -2.48 16 19 F -0.17 -2.18 16.82 2.25 0.04 -2.14 16 20 F -0.17 -2.51 17.16 2.25 0.04 -2.47 16 21 C -0.24 -3.17 10.69 29.12 0.31 -2.86 16 22 S 0.21 3.11 22.28 -107.50 -2.39 0.71 16 23 H 0.09 1.77 5.99 -51.93 -0.31 1.46 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.38 9.33 6.98 -40.82 -0.29 9.04 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.19 1.84 8.00 -52.49 -0.42 1.42 16 LS Contribution 287.79 15.07 4.34 4.34 Total: -1.00 -27.78 287.79 -5.64 -33.42 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -2.65 Total: 4.25 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.39 Total: -1.05 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.37 Total: -50.76 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.12 Total: -7.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.39 Total: 0.71 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.78 -5.64 -33.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185946863.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.299 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds