Wall clock time and date at job start Tue Mar 31 2020 01:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 H 1.08996 * 109.47486 * 305.00558 * 3 2 1 5 5 N 1.46508 * 109.46797 * 65.00637 * 3 2 1 6 6 C 1.36936 * 119.99739 * 274.99406 * 5 3 2 7 7 H 1.08001 * 119.99988 * 0.02562 * 6 5 3 8 8 C 1.38810 * 119.99701 * 180.02562 * 6 5 3 9 9 N 1.31622 * 119.99985 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99827 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47064 * 59.99853 * 10 8 6 12 12 H 1.48506 * 109.47057 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46882 * 299.99694 * 10 8 6 14 14 C 1.50709 * 109.47103 * 185.00144 * 3 2 1 15 15 N 1.29023 * 124.91372 * 105.00024 * 14 3 2 16 16 C 1.31784 * 117.12236 * 179.97438 * 15 14 3 17 17 C 1.50698 * 122.74831 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.47368 * 90.00055 * 17 16 15 19 19 F 1.39898 * 109.47297 * 210.00328 * 17 16 15 20 20 F 1.39904 * 109.46967 * 330.00083 * 17 16 15 21 21 C 1.33639 * 114.50230 * 0.02562 * 16 15 14 22 22 S 1.70979 * 124.91513 * 285.00373 * 14 3 2 23 23 H 1.09001 * 109.46838 * 299.99308 * 1 2 3 24 24 H 1.08997 * 109.47197 * 59.99234 * 1 2 3 25 25 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46838 * 240.00692 * 2 1 3 27 27 H 1.09001 * 109.47684 * 120.00776 * 2 1 3 28 28 H 0.97003 * 119.99823 * 95.00125 * 5 3 2 29 29 H 0.97005 * 119.99494 * 179.97438 * 9 8 6 30 30 H 1.07997 * 126.03698 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6525 2.0974 1.2520 6 6 0.4157 2.6734 1.3690 7 1 -0.2742 2.6446 0.5386 8 6 0.0488 3.2944 2.5550 9 7 0.8894 3.3290 3.5672 10 14 -1.6387 4.0795 2.7150 11 1 -2.6864 3.0470 2.5115 12 1 -1.7833 4.6705 4.0697 13 1 -1.7880 5.1448 1.6912 14 6 3.5420 1.4443 -0.1239 15 7 4.1943 1.7487 -1.1947 16 6 5.5097 1.6995 -1.1313 17 6 6.3953 2.0287 -2.3053 18 9 6.6984 3.3943 -2.2924 19 9 7.5786 1.2874 -2.2191 20 9 5.7308 1.7097 -3.4945 21 6 5.9939 1.3328 0.0591 22 16 4.6282 1.0434 1.1342 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8935 -0.5139 0.8899 28 1 2.2721 2.1230 1.9979 29 1 0.6331 3.7633 4.3959 30 1 7.0378 1.2316 0.3166 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185946863.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:11 Heat of formation + Delta-G solvation = -115.706680 kcal Electronic energy + Delta-G solvation = -19636.357657 eV Core-core repulsion = 15950.214449 eV Total energy + Delta-G solvation = -3686.143208 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.25650 -48.77878 -48.72555 -41.10109 -37.96187 -34.45653 -32.35761 -31.61494 -28.48074 -27.97759 -25.30825 -24.21294 -22.04443 -21.44173 -20.11539 -19.64452 -19.27536 -19.16828 -17.81724 -16.77580 -16.39528 -15.95345 -15.76358 -15.53521 -15.47743 -15.16978 -14.93461 -14.88761 -14.86479 -14.69482 -14.46180 -14.01697 -13.33778 -12.98671 -12.76158 -12.60646 -12.53482 -12.37458 -12.09034 -11.90551 -11.43573 -11.02058 -10.88501 -10.60063 -10.22522 -9.12362 -7.93896 -5.23922 -0.60526 0.08647 0.46020 1.19894 1.48116 1.52364 1.53398 1.58912 2.38573 2.57998 2.92689 3.27022 3.28104 3.41801 3.85889 4.01084 4.04907 4.32040 4.34356 4.56752 4.71456 4.86880 5.06032 5.16533 5.38873 5.55499 5.69701 6.23819 6.36323 7.33788 7.95465 8.23664 9.28857 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.004745 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.766023 B = 5900.152737 C = 6038.817878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.244 3.756 4 H 0.068 0.932 5 N -0.726 5.726 6 C -0.231 4.231 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.965 5.965 10 Si 0.966 3.034 11 H -0.274 1.274 12 H -0.298 1.298 13 H -0.283 1.283 14 C 0.043 3.957 15 N -0.475 5.475 16 C -0.049 4.049 17 C 0.555 3.445 18 F -0.175 7.175 19 F -0.160 7.160 20 F -0.173 7.173 21 C -0.205 4.205 22 S 0.235 5.765 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.377 0.623 29 H 0.252 0.748 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 -7.213 -7.767 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.132 3.868 4 H 0.086 0.914 5 N -0.369 5.369 6 C -0.362 4.362 7 H 0.101 0.899 8 C -0.259 4.259 9 N -0.615 5.615 10 Si 0.796 3.204 11 H -0.200 1.200 12 H -0.225 1.225 13 H -0.209 1.209 14 C -0.235 4.235 15 N -0.189 5.189 16 C -0.184 4.184 17 C 0.498 3.502 18 F -0.156 7.156 19 F -0.142 7.142 20 F -0.154 7.154 21 C -0.347 4.347 22 S 0.493 5.507 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.210 0.790 29 H 0.061 0.939 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 10.567 -7.299 -7.239 14.742 hybrid contribution 0.002 1.015 -0.417 1.097 sum 10.569 -6.283 -7.655 14.484 Atomic orbital electron populations 1.21710 0.94750 1.01358 1.02240 1.22043 0.97615 0.95265 1.01409 1.19015 0.82282 0.94838 0.90690 0.91413 1.42568 1.16531 1.66846 1.10920 1.19457 0.91796 1.26884 0.98058 0.89871 1.25449 1.01505 1.02534 0.96389 1.69781 1.37053 1.50323 1.04386 0.85323 0.80422 0.78524 0.76168 1.20033 1.22460 1.20896 1.27666 1.02891 1.01035 0.91950 1.65777 1.05988 1.17499 1.29617 1.20086 0.90833 1.11833 0.95607 1.17079 0.77850 0.74394 0.80886 1.93227 1.93466 1.32342 1.96556 1.93214 1.48059 1.76677 1.96209 1.93207 1.80686 1.92490 1.49000 1.27430 1.07194 1.04983 0.95060 1.84276 0.93934 1.58348 1.14160 0.92496 0.93261 0.91855 0.91229 0.92157 0.78983 0.93912 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.18 71.98 0.66 -4.07 16 2 C -0.12 -4.02 5.59 30.60 0.17 -3.85 16 3 C 0.24 9.39 2.94 44.25 0.13 9.52 16 4 H 0.07 2.79 8.08 -2.39 -0.02 2.77 16 5 N -0.73 -33.84 5.05 -326.48 -1.65 -35.49 16 6 C -0.23 -11.81 7.75 84.03 0.65 -11.16 16 7 H 0.08 4.09 7.32 -2.91 -0.02 4.06 16 8 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 9 N -0.97 -55.74 13.06 21.65 0.28 -55.46 16 10 Si 0.97 44.05 29.55 68.60 2.03 46.07 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.04 1.52 6.30 88.52 0.56 2.08 16 15 N -0.47 -16.63 10.34 -179.39 -1.85 -18.48 16 16 C -0.05 -1.42 6.20 41.52 0.26 -1.17 16 17 C 0.56 14.73 3.49 71.24 0.25 14.98 16 18 F -0.17 -4.81 17.30 44.97 0.78 -4.03 16 19 F -0.16 -3.54 16.82 44.97 0.76 -2.78 16 20 F -0.17 -4.99 17.16 44.97 0.77 -4.22 16 21 C -0.21 -4.88 10.69 66.78 0.71 -4.17 16 22 S 0.24 6.63 22.28 -56.49 -1.26 5.37 16 23 H 0.06 2.25 5.99 -2.39 -0.01 2.24 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.38 18.48 6.98 -92.71 -0.65 17.83 16 29 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 30 H 0.23 3.40 8.00 -2.91 -0.02 3.38 16 Total: -1.00 -59.56 287.79 4.26 -55.30 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.55 Total: 14.64 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 3.86 Total: -0.93 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.22 Total: -109.43 kcal Atomic # 9 Polarization: -13.34 SS G_CDS: 2.31 Total: -11.03 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -1.26 Total: 5.37 kcal Total: -59.56 4.26 -55.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185946863.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.402 kcal (2) G-P(sol) polarization free energy of solvation -59.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds