Wall clock time and date at job start Tue Mar 31 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86797 * 119.99745 * 2 1 4 4 H 1.48494 * 109.47330 * 270.00093 * 3 2 1 5 5 H 1.48496 * 109.47338 * 30.00271 * 3 2 1 6 6 H 1.48508 * 109.46859 * 150.00371 * 3 2 1 7 7 C 1.40140 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.41692 * 119.99896 * 359.97438 * 7 2 1 10 10 O 1.21797 * 120.00180 * 0.02562 * 9 7 2 11 11 N 1.34784 * 120.00083 * 180.02562 * 9 7 2 12 12 C 1.39445 * 120.00279 * 185.52233 * 11 9 7 13 13 C 1.38922 * 120.12130 * 24.86704 * 12 11 9 14 14 C 1.38167 * 119.98173 * 180.02562 * 13 12 11 15 15 Cl 1.73603 * 119.89200 * 180.02562 * 14 13 12 16 16 C 1.38583 * 120.21996 * 0.02562 * 14 13 12 17 17 C 1.38166 * 120.24218 * 359.70107 * 16 14 13 18 18 C 1.38761 * 120.01780 * 0.55661 * 17 16 14 19 19 N 1.39652 * 120.11278 * 179.74430 * 18 17 16 20 20 C 1.46500 * 119.99984 * 359.72027 * 19 18 17 21 21 C 1.52997 * 117.51887 * 136.28556 * 20 19 18 22 22 C 1.52994 * 60.00280 * 107.48430 * 21 20 19 23 23 H 0.97001 * 120.00161 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99711 * 5.52139 * 11 9 7 25 25 H 1.08009 * 120.00827 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.87926 * 179.97438 * 16 14 13 27 27 H 1.08006 * 119.99160 * 180.27188 * 17 16 14 28 28 H 0.97000 * 120.00398 * 179.72163 * 19 18 17 29 29 H 1.08998 * 115.54718 * 350.58192 * 20 19 18 30 30 H 1.09000 * 117.49987 * 214.97378 * 21 20 19 31 31 H 1.09001 * 117.49986 * 359.97438 * 21 20 19 32 32 H 1.09003 * 117.49687 * 252.51477 * 22 21 20 33 33 H 1.08993 * 117.50383 * 107.49029 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0465 -1.4000 5 1 1.4377 2.6526 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2137 -0.0001 9 6 1.2986 -2.4407 -0.0005 10 8 0.0806 -2.4408 -0.0005 11 7 1.9725 -3.6080 -0.0005 12 6 1.2801 -4.8128 -0.1168 13 6 0.0341 -4.8446 -0.7303 14 6 -0.6495 -6.0399 -0.8434 15 17 -2.2062 -6.0769 -1.6111 16 6 -0.0968 -7.2094 -0.3460 17 6 1.1443 -7.1893 0.2608 18 6 1.8373 -5.9935 0.3846 19 7 3.0895 -5.9701 1.0024 20 6 3.6709 -7.2084 1.5266 21 6 5.1535 -7.4657 1.2501 22 6 4.6929 -7.0853 2.6586 23 1 -0.4850 0.8400 0.0004 24 1 2.9391 -3.6099 0.0803 25 1 -0.4000 -3.9350 -1.1187 26 1 -0.6362 -8.1406 -0.4371 27 1 1.5732 -8.1039 0.6431 28 1 3.5743 -5.1340 1.0844 29 1 3.0047 -8.0710 1.5417 30 1 5.4627 -8.4975 1.0832 31 1 5.6966 -6.7137 0.6776 32 1 4.9329 -6.0828 3.0130 33 1 4.6990 -7.8667 3.4184 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187578745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:05 Heat of formation + Delta-G solvation = 16.474333 kcal Electronic energy + Delta-G solvation = -19014.112065 eV Core-core repulsion = 15873.513690 eV Total energy + Delta-G solvation = -3140.598375 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.69808 -37.79520 -36.97811 -35.78679 -33.62554 -33.04411 -32.27754 -29.43571 -27.86810 -26.35057 -23.39463 -22.46862 -21.83749 -20.71285 -19.84152 -18.05818 -17.14221 -16.23410 -16.07158 -15.45076 -14.90679 -14.35135 -14.26770 -13.98089 -13.39798 -13.21708 -12.75417 -12.66315 -12.31438 -12.12989 -11.67189 -11.65845 -11.38220 -11.20246 -11.05355 -10.78728 -10.66065 -10.54883 -10.37935 -10.28972 -9.43370 -9.20039 -8.91972 -7.82481 -7.50638 -6.55027 -6.40537 -4.94525 1.89577 1.97494 2.81303 3.02569 3.09994 3.13025 3.42425 3.79835 3.94374 4.19642 4.48617 4.57258 4.71697 4.83473 4.90645 5.29795 5.44679 5.51855 5.65898 5.67413 5.79781 5.96907 5.97401 5.99012 6.37904 6.55287 6.68011 6.94295 7.17797 7.28147 7.51711 7.72201 7.85893 8.00200 8.16209 8.76011 9.21371 10.33816 10.53699 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.006241 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.455254 B = 4485.173777 C = 6678.560960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.543 3.457 10 O -0.561 6.561 11 N -0.694 5.694 12 C 0.145 3.855 13 C -0.095 4.095 14 C -0.057 4.057 15 Cl -0.093 7.093 16 C -0.116 4.116 17 C -0.167 4.167 18 C 0.159 3.841 19 N -0.719 5.719 20 C 0.100 3.900 21 C -0.204 4.204 22 C -0.198 4.198 23 H 0.274 0.726 24 H 0.386 0.614 25 H 0.164 0.836 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.398 0.602 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 -12.371 1.500 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.353 3.647 10 O -0.445 6.445 11 N -0.338 5.338 12 C 0.042 3.958 13 C -0.117 4.117 14 C -0.086 4.086 15 Cl -0.064 7.064 16 C -0.137 4.137 17 C -0.190 4.190 18 C 0.057 3.943 19 N -0.349 5.349 20 C -0.007 4.007 21 C -0.243 4.243 22 C -0.237 4.237 23 H 0.085 0.915 24 H 0.219 0.781 25 H 0.181 0.819 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.233 0.767 29 H 0.146 0.854 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.700 -12.284 1.467 13.621 hybrid contribution 1.148 1.097 0.142 1.594 sum 6.848 -11.187 1.609 13.214 Atomic orbital electron populations 1.70000 1.07248 1.27988 1.31919 1.25748 0.94652 1.00655 0.92443 0.86288 0.80147 0.80827 0.79095 1.19460 1.20199 1.18763 1.20005 0.94272 0.90015 1.53053 0.91286 1.17032 0.87621 0.81940 0.78129 1.90624 1.13473 1.85663 1.54731 1.43976 1.09054 1.04351 1.76393 1.17379 0.94174 0.85420 0.98810 1.21345 0.94027 0.98030 0.98315 1.20503 0.88470 0.95053 1.04537 1.98305 1.28582 1.98879 1.80653 1.20502 0.95623 0.96541 1.01035 1.20182 0.95988 0.95832 1.06982 1.17618 0.87118 0.93482 0.96132 1.43702 1.18149 1.08235 1.64845 1.21408 0.89883 0.89944 0.99514 1.23472 0.99127 1.02700 0.98988 1.23383 1.04820 1.03247 0.92251 0.91540 0.78102 0.81898 0.86117 0.85910 0.76661 0.85414 0.88470 0.88712 0.88643 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.16 11.73 55.56 0.65 -20.51 16 2 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 3 Si 0.91 19.04 29.56 -169.99 -5.02 14.02 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.54 -14.30 9.31 -37.55 -0.35 -14.65 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 C 0.54 14.71 7.37 -14.94 -0.11 14.60 16 10 O -0.56 -17.16 12.03 5.10 0.06 -17.10 16 11 N -0.69 -15.18 5.17 -12.30 -0.06 -15.24 16 12 C 0.14 3.00 6.45 -83.54 -0.54 2.46 16 13 C -0.09 -2.08 8.48 -39.35 -0.33 -2.42 16 14 C -0.06 -1.08 6.32 -39.48 -0.25 -1.33 16 15 Cl -0.09 -1.63 28.95 -51.86 -1.50 -3.13 16 16 C -0.12 -1.87 9.82 -39.48 -0.39 -2.26 16 17 C -0.17 -2.55 9.32 -39.41 -0.37 -2.91 16 18 C 0.16 2.71 6.68 -83.50 -0.56 2.16 16 19 N -0.72 -10.09 5.71 -51.96 -0.30 -10.38 16 20 C 0.10 1.10 6.32 -67.93 -0.43 0.67 16 21 C -0.20 -1.89 10.46 -26.74 -0.28 -2.17 16 22 C -0.20 -1.87 10.45 -26.73 -0.28 -2.15 16 23 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 24 H 0.39 7.18 7.29 -40.82 -0.30 6.89 16 25 H 0.16 4.19 5.78 -52.48 -0.30 3.89 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.12 1.49 5.89 -52.48 -0.31 1.18 16 28 H 0.40 5.49 7.25 -40.82 -0.30 5.19 16 29 H 0.13 1.28 5.91 -51.93 -0.31 0.97 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 299.84 15.07 4.52 4.52 Total: -1.00 -31.11 299.84 -8.81 -39.92 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -3.17 Total: 13.67 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.98 Total: -5.76 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.29 Total: -46.13 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.06 Total: -17.10 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.50 Total: -3.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.11 -8.81 -39.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187578745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.392 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds