Wall clock time and date at job start Tue Mar 31 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86797 * 119.99745 * 2 1 4 4 H 1.48494 * 109.47330 * 270.00093 * 3 2 1 5 5 H 1.48496 * 109.47338 * 30.00271 * 3 2 1 6 6 H 1.48508 * 109.46859 * 150.00371 * 3 2 1 7 7 C 1.40140 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.41692 * 119.99896 * 359.97438 * 7 2 1 10 10 O 1.21797 * 120.00180 * 0.02562 * 9 7 2 11 11 N 1.34784 * 120.00083 * 180.02562 * 9 7 2 12 12 C 1.39445 * 120.00279 * 185.52233 * 11 9 7 13 13 C 1.38922 * 120.12130 * 24.86704 * 12 11 9 14 14 C 1.38167 * 119.98173 * 180.02562 * 13 12 11 15 15 Cl 1.73603 * 119.89200 * 180.02562 * 14 13 12 16 16 C 1.38583 * 120.21996 * 0.02562 * 14 13 12 17 17 C 1.38166 * 120.24218 * 359.70107 * 16 14 13 18 18 C 1.38761 * 120.01780 * 0.55661 * 17 16 14 19 19 N 1.39652 * 120.11278 * 179.74430 * 18 17 16 20 20 C 1.46500 * 119.99984 * 359.72027 * 19 18 17 21 21 C 1.52997 * 117.51887 * 136.28556 * 20 19 18 22 22 C 1.52994 * 60.00280 * 107.48430 * 21 20 19 23 23 H 0.97001 * 120.00161 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99711 * 5.52139 * 11 9 7 25 25 H 1.08009 * 120.00827 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.87926 * 179.97438 * 16 14 13 27 27 H 1.08006 * 119.99160 * 180.27188 * 17 16 14 28 28 H 0.97000 * 120.00398 * 179.72163 * 19 18 17 29 29 H 1.08998 * 115.54718 * 350.58192 * 20 19 18 30 30 H 1.09000 * 117.49987 * 214.97378 * 21 20 19 31 31 H 1.09001 * 117.49986 * 359.97438 * 21 20 19 32 32 H 1.09003 * 117.49687 * 252.51477 * 22 21 20 33 33 H 1.08993 * 117.50383 * 107.49029 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0465 -1.4000 5 1 1.4377 2.6526 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2137 -0.0001 9 6 1.2986 -2.4407 -0.0005 10 8 0.0806 -2.4408 -0.0005 11 7 1.9725 -3.6080 -0.0005 12 6 1.2801 -4.8128 -0.1168 13 6 0.0341 -4.8446 -0.7303 14 6 -0.6495 -6.0399 -0.8434 15 17 -2.2062 -6.0769 -1.6111 16 6 -0.0968 -7.2094 -0.3460 17 6 1.1443 -7.1893 0.2608 18 6 1.8373 -5.9935 0.3846 19 7 3.0895 -5.9701 1.0024 20 6 3.6709 -7.2084 1.5266 21 6 5.1535 -7.4657 1.2501 22 6 4.6929 -7.0853 2.6586 23 1 -0.4850 0.8400 0.0004 24 1 2.9391 -3.6099 0.0803 25 1 -0.4000 -3.9350 -1.1187 26 1 -0.6362 -8.1406 -0.4371 27 1 1.5732 -8.1039 0.6431 28 1 3.5743 -5.1340 1.0844 29 1 3.0047 -8.0710 1.5417 30 1 5.4627 -8.4975 1.0832 31 1 5.6966 -6.7137 0.6776 32 1 4.9329 -6.0828 3.0130 33 1 4.6990 -7.8667 3.4184 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187578745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:05 Heat of formation + Delta-G solvation = -4.017355 kcal Electronic energy + Delta-G solvation = -19015.000651 eV Core-core repulsion = 15873.513690 eV Total energy + Delta-G solvation = -3141.486961 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18884 -39.25060 -38.30177 -37.18189 -35.33637 -34.64844 -33.95587 -31.01529 -29.33603 -28.16803 -24.72558 -23.32058 -23.17045 -22.00948 -21.44587 -19.73235 -18.60702 -17.78792 -17.53282 -17.01559 -16.11241 -15.92808 -15.63961 -15.46309 -14.74173 -14.57834 -14.53911 -14.19915 -13.67639 -13.35762 -13.24301 -12.95211 -12.82270 -12.72998 -12.44493 -12.35949 -12.06981 -12.01345 -11.75298 -11.27145 -11.11801 -10.83079 -10.36506 -9.81248 -9.09575 -8.38453 -7.95872 -7.00926 0.47990 0.52454 1.38014 1.38703 1.39728 1.55046 2.18358 2.30776 2.36326 2.80836 2.97240 3.13211 3.65126 3.84428 3.91860 4.14791 4.19696 4.29216 4.48779 4.57321 4.77511 4.83846 4.96982 5.08116 5.19532 5.22666 5.28350 5.28762 5.52915 5.74382 5.85962 6.12851 6.17674 6.51744 6.69862 6.72844 7.36768 8.37755 8.56191 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.006241 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.455254 B = 4485.173777 C = 6678.560960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.033 3.967 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.565 4.565 8 H 0.090 0.910 9 C 0.529 3.471 10 O -0.608 6.608 11 N -0.687 5.687 12 C 0.104 3.896 13 C -0.120 4.120 14 C -0.077 4.077 15 Cl -0.090 7.090 16 C -0.095 4.095 17 C -0.159 4.159 18 C 0.177 3.823 19 N -0.716 5.716 20 C 0.075 3.925 21 C -0.190 4.190 22 C -0.191 4.191 23 H 0.279 0.721 24 H 0.400 0.600 25 H 0.114 0.886 26 H 0.157 0.843 27 H 0.167 0.833 28 H 0.396 0.604 29 H 0.145 0.855 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.322 -14.419 2.449 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.600 4.600 8 H 0.108 0.892 9 C 0.339 3.661 10 O -0.496 6.496 11 N -0.331 5.331 12 C 0.003 3.997 13 C -0.143 4.143 14 C -0.105 4.105 15 Cl -0.061 7.061 16 C -0.116 4.116 17 C -0.182 4.182 18 C 0.072 3.928 19 N -0.345 5.345 20 C -0.031 4.031 21 C -0.229 4.229 22 C -0.230 4.230 23 H 0.089 0.911 24 H 0.235 0.765 25 H 0.132 0.868 26 H 0.174 0.826 27 H 0.185 0.815 28 H 0.231 0.769 29 H 0.162 0.838 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.225 -14.406 2.431 16.766 hybrid contribution 0.427 1.541 -0.128 1.604 sum 8.652 -12.865 2.303 15.674 Atomic orbital electron populations 1.70166 1.09683 1.29473 1.33480 1.27004 0.95462 1.05106 0.91005 0.84981 0.78850 0.74760 0.79526 1.18585 1.19680 1.16983 1.20542 0.95447 0.90587 1.53391 0.89196 1.17382 0.87318 0.83675 0.77764 1.90597 1.15448 1.86886 1.56630 1.43423 1.09506 1.03882 1.76289 1.17549 0.94612 0.86170 1.01391 1.21014 0.95449 0.97560 1.00276 1.20593 0.88879 0.95126 1.05944 1.98294 1.28297 1.98853 1.80676 1.20928 0.95667 0.96510 0.98465 1.20668 0.95287 0.96559 1.05678 1.17683 0.87952 0.92547 0.94649 1.43884 1.16996 1.09653 1.63926 1.21768 0.91091 0.88966 1.01228 1.23516 0.97097 1.03779 0.98542 1.23452 1.03233 1.03584 0.92684 0.91109 0.76541 0.86796 0.82579 0.81547 0.76857 0.83793 0.86341 0.89310 0.89419 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.71 11.73 21.85 0.26 -47.46 16 2 C 0.03 1.76 5.50 85.33 0.47 2.23 16 3 Si 1.00 39.41 29.56 68.60 2.03 41.44 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 7 C -0.56 -30.95 9.31 23.59 0.22 -30.73 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.53 30.27 7.37 85.09 0.63 30.90 16 10 O -0.61 -39.96 12.03 -4.66 -0.06 -40.02 16 11 N -0.69 -31.31 5.17 -310.98 -1.61 -32.91 16 12 C 0.10 4.44 6.45 38.48 0.25 4.69 16 13 C -0.12 -5.60 8.48 22.42 0.19 -5.41 16 14 C -0.08 -2.93 6.32 22.34 0.14 -2.79 16 15 Cl -0.09 -3.21 28.95 -2.72 -0.08 -3.29 16 16 C -0.10 -2.83 9.82 22.34 0.22 -2.61 16 17 C -0.16 -4.33 9.32 22.38 0.21 -4.12 16 18 C 0.18 5.77 6.68 38.41 0.26 6.03 16 19 N -0.72 -18.63 5.71 -318.31 -1.82 -20.45 16 20 C 0.08 1.38 6.32 44.99 0.28 1.67 16 21 C -0.19 -2.81 10.46 30.59 0.32 -2.49 16 22 C -0.19 -2.93 10.45 30.59 0.32 -2.61 16 23 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 24 H 0.40 15.27 7.29 -92.71 -0.68 14.59 16 25 H 0.11 6.45 5.78 -2.91 -0.02 6.43 16 26 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.17 3.10 5.89 -2.91 -0.02 3.08 16 28 H 0.40 10.48 7.25 -92.71 -0.67 9.81 16 29 H 0.14 2.15 5.91 -2.39 -0.01 2.13 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.42 299.84 2.06 -71.36 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.17 Total: 36.59 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 3.50 Total: -5.26 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -3.17 Total: -100.82 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.06 Total: -40.02 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.08 Total: -3.29 kcal Total: -73.42 2.06 -71.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187578745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.345 kcal (2) G-P(sol) polarization free energy of solvation -73.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds