Wall clock time and date at job start Tue Mar 31 2020 01:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38251 * 120.00189 * 2 1 4 4 C 1.38206 * 120.00358 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99803 * 0.27806 * 4 3 2 6 6 C 1.38210 * 119.99758 * 359.51112 * 5 4 3 7 7 S 1.76200 * 119.99888 * 180.25438 * 6 5 4 8 8 O 1.42093 * 106.40352 * 23.75191 * 7 6 5 9 9 O 1.42096 * 106.40221 * 156.67216 * 7 6 5 10 10 N 1.65597 * 107.21841 * 270.21126 * 7 6 5 11 11 C 1.36938 * 120.00323 * 89.99937 * 10 7 6 12 12 H 1.08008 * 119.99705 * 6.54326 * 11 10 7 13 13 C 1.38806 * 120.00408 * 186.54093 * 11 10 7 14 14 N 1.31611 * 120.00202 * 24.53431 * 13 11 10 15 15 Si 1.86802 * 120.00172 * 204.53213 * 13 11 10 16 16 H 1.48500 * 109.46991 * 84.92283 * 15 13 11 17 17 H 1.48493 * 109.47475 * 204.92599 * 15 13 11 18 18 H 1.48507 * 109.47214 * 324.92804 * 15 13 11 19 19 C 1.46501 * 120.00169 * 269.99959 * 10 7 6 20 20 C 1.47198 * 109.47031 * 93.40217 * 19 10 7 21 21 N 4.32616 * 97.05520 * 235.64357 * 2 1 3 22 22 C 1.38211 * 119.99921 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47096 * 90.00310 * 1 2 3 24 24 H 1.08998 * 109.46924 * 209.99653 * 1 2 3 25 25 H 1.08996 * 109.46857 * 330.00409 * 1 2 3 26 26 H 1.08007 * 119.99765 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.00450 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.99818 * 179.71893 * 5 4 3 29 29 H 0.97001 * 120.00633 * 179.97438 * 14 13 11 30 30 H 1.09000 * 109.47344 * 213.40036 * 19 10 7 31 31 H 1.09000 * 109.47200 * 333.40080 * 19 10 7 32 32 H 1.08009 * 120.00501 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0047 6 6 3.5806 -1.1970 -0.0003 7 16 4.4616 -2.7229 -0.0003 8 8 5.7445 -2.4456 0.5442 9 8 3.5800 -3.6953 0.5441 10 7 4.7068 -3.1475 -1.5820 11 6 5.8352 -2.7301 -2.2361 12 1 6.6143 -2.2150 -1.6937 13 6 5.9777 -2.9690 -3.5960 14 7 4.9120 -3.1358 -4.3500 15 14 7.6820 -3.0536 -4.3559 16 1 8.2255 -4.4268 -4.2008 17 1 7.5979 -2.7146 -5.7992 18 1 8.5777 -2.0867 -3.6717 19 6 3.7165 -3.9696 -2.2818 20 6 2.7694 -3.0967 -2.9944 21 7 2.0384 -2.4229 -3.5444 22 6 2.1981 -1.1969 -0.0005 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0010 28 1 5.3517 0.0000 -0.0089 29 1 5.0115 -3.3024 -5.3004 30 1 4.2225 -4.6175 -2.9975 31 1 3.1749 -4.5799 -1.5590 32 1 1.6581 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192662712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:47 Heat of formation + Delta-G solvation = -9.343999 kcal Electronic energy + Delta-G solvation = -20051.426078 eV Core-core repulsion = 16911.751843 eV Total energy + Delta-G solvation = -3139.674235 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.76373 -36.75093 -36.07042 -34.65251 -34.47559 -32.46336 -31.76603 -30.64771 -27.55240 -26.63619 -24.16213 -22.59849 -21.29802 -18.66970 -18.05649 -17.11767 -16.68020 -16.17298 -15.31734 -15.21146 -14.69532 -14.35316 -13.81141 -13.56823 -13.54835 -13.03826 -12.77412 -12.40679 -12.08669 -11.87501 -11.84481 -11.61271 -11.50314 -11.43752 -11.12893 -10.96467 -10.93184 -10.74230 -10.61732 -10.33166 -10.18362 -9.97301 -9.61147 -8.78144 -8.50546 -8.32129 -6.78454 -4.13631 1.30541 1.61399 1.75991 3.04632 3.11810 3.15764 3.62474 3.93286 3.98990 4.11130 4.47444 4.57530 4.89086 5.04686 5.11697 5.30222 5.36956 5.51497 5.52828 5.73942 5.77408 5.94039 5.98831 6.07788 6.31239 6.43534 6.47274 6.69722 6.72676 6.81464 6.87143 7.14923 7.36120 8.01712 8.42380 8.83941 8.84699 10.21072 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.007551 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.993361 B = 3707.112016 C = 3920.324904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C -0.089 4.089 4 C -0.144 4.144 5 C -0.029 4.029 6 C -0.658 4.658 7 S 2.552 3.448 8 O -0.975 6.975 9 O -0.992 6.992 10 N -0.802 5.802 11 C -0.253 4.253 12 H 0.127 0.873 13 C 0.031 3.969 14 N -0.840 5.840 15 Si 0.937 3.063 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.264 1.264 19 C 0.225 3.775 20 C 0.242 3.758 21 N -0.476 5.476 22 C -0.028 4.028 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.281 0.719 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 2.245 3.461 4.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.115 4.115 3 C -0.107 4.107 4 C -0.163 4.163 5 C -0.048 4.048 6 C -0.737 4.737 7 S 2.650 3.350 8 O -0.965 6.965 9 O -0.982 6.982 10 N -0.625 5.625 11 C -0.398 4.398 12 H 0.145 0.855 13 C -0.180 4.180 14 N -0.480 5.480 15 Si 0.762 3.238 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.188 1.188 19 C 0.095 3.905 20 C -0.077 4.077 21 N -0.156 5.156 22 C -0.047 4.047 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.151 0.849 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.119 0.881 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.253 2.805 3.455 5.513 hybrid contribution 0.543 0.768 -0.764 1.212 sum -2.710 3.574 2.691 5.230 Atomic orbital electron populations 1.20753 0.91352 1.02331 1.02283 1.19972 0.95979 0.93576 1.01939 1.21087 0.94414 0.97143 0.98074 1.21200 0.94370 0.98145 1.02568 1.20855 1.00002 0.91212 0.92717 1.32334 1.06171 1.23791 1.11384 1.10246 0.73322 0.74207 0.77250 1.93384 1.39152 1.85287 1.78652 1.93372 1.66714 1.59166 1.78923 1.55221 1.22778 1.52838 1.31671 1.20147 0.90137 1.36319 0.93183 0.85539 1.25546 0.99890 0.96795 0.95757 1.69933 1.28829 1.42058 1.07161 0.85745 0.80589 0.79622 0.77828 1.19413 1.20804 1.18837 1.19031 0.86236 0.90094 0.95129 1.29534 0.91404 0.94313 0.92487 1.80870 1.14804 1.09159 1.10775 1.20697 0.92628 0.97781 0.93636 0.91268 0.91574 0.91939 0.86450 0.86101 0.84932 0.90777 0.84770 0.88132 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 36.01 0.36 -1.15 16 2 C -0.11 -1.97 5.88 -104.62 -0.62 -2.59 16 3 C -0.09 -1.44 9.70 -39.59 -0.38 -1.82 16 4 C -0.14 -2.43 10.05 -39.58 -0.40 -2.83 16 5 C -0.03 -0.56 9.52 -39.58 -0.38 -0.94 16 6 C -0.66 -13.68 5.97 -39.58 -0.24 -13.92 16 7 S 2.55 55.80 5.65 -107.50 -0.61 55.19 16 8 O -0.97 -23.10 16.07 -57.18 -0.92 -24.02 16 9 O -0.99 -22.33 15.85 -57.18 -0.91 -23.24 16 10 N -0.80 -17.49 2.88 -62.77 -0.18 -17.67 16 11 C -0.25 -5.70 9.48 -15.06 -0.14 -5.85 16 12 H 0.13 2.83 7.22 -52.48 -0.38 2.45 16 13 C 0.03 0.68 4.95 -17.44 -0.09 0.60 16 14 N -0.84 -19.09 8.92 55.49 0.49 -18.59 16 15 Si 0.94 17.53 29.62 -169.99 -5.03 12.49 16 16 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 17 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 19 C 0.22 4.52 5.45 -6.83 -0.04 4.48 16 20 C 0.24 5.34 13.35 -20.75 -0.28 5.06 16 21 N -0.48 -11.23 18.54 42.16 0.78 -10.45 16 22 C -0.03 -0.56 9.18 -39.58 -0.36 -0.92 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 25 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.13 2.47 7.62 -52.49 -0.40 2.07 16 29 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 30 H 0.13 2.62 6.39 -51.93 -0.33 2.29 16 31 H 0.10 1.77 6.94 -51.93 -0.36 1.41 16 32 H 0.13 2.40 7.62 -52.48 -0.40 2.00 16 LS Contribution 296.91 15.07 4.47 4.47 Total: -1.00 -28.58 296.91 -7.57 -36.15 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.11 Total: 5.53 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.56 Total: -19.88 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 1.10 Total: -46.71 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.82 Total: -47.25 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 55.80 SS G_CDS: -0.61 Total: 55.19 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.58 -7.57 -36.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192662712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.807 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds