Wall clock time and date at job start Tue Mar 31 2020 01:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38251 * 120.00189 * 2 1 4 4 C 1.38206 * 120.00358 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99803 * 0.27806 * 4 3 2 6 6 C 1.38210 * 119.99758 * 359.51112 * 5 4 3 7 7 S 1.76200 * 119.99888 * 180.25438 * 6 5 4 8 8 O 1.42093 * 106.40352 * 23.75191 * 7 6 5 9 9 O 1.42096 * 106.40221 * 156.67216 * 7 6 5 10 10 N 1.65597 * 107.21841 * 270.21126 * 7 6 5 11 11 C 1.36938 * 120.00323 * 89.99937 * 10 7 6 12 12 H 1.08008 * 119.99705 * 6.54326 * 11 10 7 13 13 C 1.38806 * 120.00408 * 186.54093 * 11 10 7 14 14 N 1.31611 * 120.00202 * 24.53431 * 13 11 10 15 15 Si 1.86802 * 120.00172 * 204.53213 * 13 11 10 16 16 H 1.48500 * 109.46991 * 84.92283 * 15 13 11 17 17 H 1.48493 * 109.47475 * 204.92599 * 15 13 11 18 18 H 1.48507 * 109.47214 * 324.92804 * 15 13 11 19 19 C 1.46501 * 120.00169 * 269.99959 * 10 7 6 20 20 C 1.47198 * 109.47031 * 93.40217 * 19 10 7 21 21 N 4.32616 * 97.05520 * 235.64357 * 2 1 3 22 22 C 1.38211 * 119.99921 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47096 * 90.00310 * 1 2 3 24 24 H 1.08998 * 109.46924 * 209.99653 * 1 2 3 25 25 H 1.08996 * 109.46857 * 330.00409 * 1 2 3 26 26 H 1.08007 * 119.99765 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.00450 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.99818 * 179.71893 * 5 4 3 29 29 H 0.97001 * 120.00633 * 179.97438 * 14 13 11 30 30 H 1.09000 * 109.47344 * 213.40036 * 19 10 7 31 31 H 1.09000 * 109.47200 * 333.40080 * 19 10 7 32 32 H 1.08009 * 120.00501 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0047 6 6 3.5806 -1.1970 -0.0003 7 16 4.4616 -2.7229 -0.0003 8 8 5.7445 -2.4456 0.5442 9 8 3.5800 -3.6953 0.5441 10 7 4.7068 -3.1475 -1.5820 11 6 5.8352 -2.7301 -2.2361 12 1 6.6143 -2.2150 -1.6937 13 6 5.9777 -2.9690 -3.5960 14 7 4.9120 -3.1358 -4.3500 15 14 7.6820 -3.0536 -4.3559 16 1 8.2255 -4.4268 -4.2008 17 1 7.5979 -2.7146 -5.7992 18 1 8.5777 -2.0867 -3.6717 19 6 3.7165 -3.9696 -2.2818 20 6 2.7694 -3.0967 -2.9944 21 7 2.0384 -2.4229 -3.5444 22 6 2.1981 -1.1969 -0.0005 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0010 28 1 5.3517 0.0000 -0.0089 29 1 5.0115 -3.3024 -5.3004 30 1 4.2225 -4.6175 -2.9975 31 1 3.1749 -4.5799 -1.5590 32 1 1.6581 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192662712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:46 Heat of formation + Delta-G solvation = -26.472580 kcal Electronic energy + Delta-G solvation = -20052.168829 eV Core-core repulsion = 16911.751843 eV Total energy + Delta-G solvation = -3140.416986 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.13580 -38.44320 -37.89045 -36.49046 -36.24531 -33.76357 -33.45145 -32.05749 -29.22258 -27.87043 -25.86942 -24.03990 -22.67437 -20.36095 -19.76528 -18.75037 -18.33229 -17.79704 -16.79676 -16.76970 -16.30199 -15.90643 -15.26953 -15.16524 -14.81873 -14.66864 -14.13484 -14.09767 -13.57140 -13.27180 -13.20566 -13.19612 -13.09782 -12.99890 -12.86413 -12.76880 -12.59805 -12.16524 -12.11607 -12.03752 -11.84536 -11.62245 -11.21600 -10.26303 -10.12255 -9.70354 -8.44073 -5.88139 -0.28192 0.05237 0.35857 1.54272 1.60141 1.67884 1.94128 2.31327 2.39587 2.54460 2.78597 2.90434 3.17537 3.58794 3.66477 3.91369 3.94443 4.07642 4.36643 4.38384 4.43815 4.60383 4.73499 4.83398 4.85729 4.98671 5.17783 5.20551 5.28353 5.34387 5.46846 5.47911 6.00036 6.31962 6.73991 7.09975 7.15119 8.55516 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.007551 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.993361 B = 3707.112016 C = 3920.324904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.143 4.143 5 C -0.053 4.053 6 C -0.681 4.681 7 S 2.578 3.422 8 O -0.997 6.997 9 O -1.002 7.002 10 N -0.813 5.813 11 C -0.283 4.283 12 H 0.120 0.880 13 C 0.006 3.994 14 N -0.865 5.865 15 Si 0.992 3.008 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.223 3.777 20 C 0.253 3.747 21 N -0.505 5.505 22 C -0.051 4.051 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.159 0.841 27 H 0.156 0.844 28 H 0.130 0.870 29 H 0.281 0.719 30 H 0.141 0.859 31 H 0.125 0.875 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 3.593 3.817 5.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.161 4.161 5 C -0.072 4.072 6 C -0.763 4.763 7 S 2.678 3.322 8 O -0.987 6.987 9 O -0.992 6.992 10 N -0.637 5.637 11 C -0.426 4.426 12 H 0.138 0.862 13 C -0.202 4.202 14 N -0.505 5.505 15 Si 0.815 3.185 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.189 1.189 19 C 0.094 3.906 20 C -0.065 4.065 21 N -0.187 5.187 22 C -0.071 4.071 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.177 0.823 27 H 0.173 0.827 28 H 0.148 0.852 29 H 0.091 0.909 30 H 0.158 0.842 31 H 0.142 0.858 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.877 4.117 3.788 6.806 hybrid contribution 0.634 0.454 -0.729 1.067 sum -3.243 4.571 3.059 6.385 Atomic orbital electron populations 1.20826 0.88749 1.04169 1.02825 1.20454 0.98043 0.93118 1.00500 1.21623 0.94345 0.98423 0.95794 1.21625 0.95126 0.98449 1.00890 1.21054 1.00256 0.92041 0.93899 1.31965 1.06879 1.23287 1.14201 1.08634 0.72753 0.74253 0.76605 1.93356 1.40486 1.85813 1.79037 1.93355 1.66837 1.59903 1.79081 1.54914 1.23458 1.54111 1.31224 1.20173 0.90886 1.37829 0.93668 0.86231 1.26118 1.02390 0.96066 0.95620 1.69988 1.30011 1.43337 1.07198 0.84941 0.77265 0.79719 0.76605 1.18650 1.21142 1.18936 1.19241 0.85891 0.89738 0.95723 1.29891 0.90924 0.93851 0.91832 1.80847 1.15927 1.10033 1.11860 1.20858 0.92312 0.99002 0.94903 0.91190 0.91045 0.88950 0.82328 0.82672 0.85179 0.90863 0.84191 0.85776 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.65 10.01 71.24 0.71 -1.94 16 2 C -0.12 -3.88 5.88 -19.87 -0.12 -4.00 16 3 C -0.08 -2.42 9.70 22.27 0.22 -2.20 16 4 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 5 C -0.05 -2.04 9.52 22.27 0.21 -1.82 16 6 C -0.68 -28.21 5.97 22.27 0.13 -28.07 16 7 S 2.58 113.68 5.65 -56.49 -0.32 113.36 16 8 O -1.00 -47.91 16.07 -128.00 -2.06 -49.97 16 9 O -1.00 -45.12 15.85 -128.00 -2.03 -47.15 16 10 N -0.81 -35.82 2.88 -352.51 -1.02 -36.83 16 11 C -0.28 -12.94 9.48 84.03 0.80 -12.14 16 12 H 0.12 5.50 7.22 -2.91 -0.02 5.47 16 13 C 0.01 0.28 4.95 84.86 0.42 0.70 16 14 N -0.87 -39.53 8.92 21.65 0.19 -39.33 16 15 Si 0.99 35.84 29.62 68.60 2.03 37.87 16 16 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 17 H -0.29 -10.39 7.11 99.48 0.71 -9.69 16 18 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 19 C 0.22 9.00 5.45 84.57 0.46 9.46 16 20 C 0.25 11.23 13.35 89.44 1.19 12.42 16 21 N -0.51 -23.90 18.54 20.01 0.37 -23.53 16 22 C -0.05 -1.98 9.18 22.27 0.20 -1.78 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 25 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 26 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.13 4.88 7.62 -2.91 -0.02 4.86 16 29 H 0.28 12.33 8.31 -92.71 -0.77 11.55 16 30 H 0.14 5.49 6.39 -2.39 -0.02 5.47 16 31 H 0.12 4.32 6.94 -2.39 -0.02 4.31 16 32 H 0.12 4.68 7.62 -2.91 -0.02 4.65 16 Total: -1.00 -60.65 296.91 2.78 -57.87 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 1.15 Total: 21.29 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.46 Total: -33.59 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -0.45 Total: -99.69 kcal Atomic # 8 Polarization: -93.03 SS G_CDS: -4.09 Total: -97.12 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Atomic # 16 Polarization: 113.68 SS G_CDS: -0.32 Total: 113.36 kcal Total: -60.65 2.78 -57.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192662712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.400 kcal (2) G-P(sol) polarization free energy of solvation -60.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds