Wall clock time and date at job start Tue Mar 31 2020 01:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37976 * 120.07670 * 2 1 4 4 C 1.38335 * 120.14969 * 179.97438 * 3 2 1 5 5 S 1.76208 * 119.84450 * 180.02562 * 4 3 2 6 6 O 1.42097 * 106.40220 * 203.53991 * 5 4 3 7 7 O 1.42105 * 106.40051 * 336.46097 * 5 4 3 8 8 N 1.65600 * 107.21640 * 90.00204 * 5 4 3 9 9 C 1.46506 * 119.99795 * 269.99879 * 8 5 4 10 10 C 1.36933 * 119.99778 * 90.00236 * 8 5 4 11 11 H 1.07995 * 120.00391 * 20.61735 * 10 8 5 12 12 C 1.38822 * 119.99491 * 200.61391 * 10 8 5 13 13 N 1.31619 * 119.99931 * 14.76158 * 12 10 8 14 14 Si 1.86795 * 119.99552 * 194.75941 * 12 10 8 15 15 H 1.48502 * 109.46989 * 85.01125 * 14 12 10 16 16 H 1.48498 * 109.47135 * 205.00490 * 14 12 10 17 17 H 1.48491 * 109.47458 * 325.00738 * 14 12 10 18 18 C 1.38388 * 120.30730 * 359.72577 * 4 3 2 19 19 C 1.37926 * 120.14983 * 0.55236 * 18 4 3 20 20 C 1.39616 * 120.08194 * 179.97438 * 2 1 3 21 21 C 1.43205 * 120.14533 * 0.02562 * 20 2 1 22 22 N 3.48499 * 80.49791 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.47722 * 270.02220 * 1 2 3 24 24 H 1.09000 * 109.47126 * 30.02812 * 1 2 3 25 25 H 1.09010 * 109.47023 * 150.01994 * 1 2 3 26 26 H 1.08001 * 119.92055 * 359.95319 * 3 2 1 27 27 H 1.08994 * 109.46904 * 95.00105 * 9 8 5 28 28 H 1.08996 * 109.46823 * 215.00498 * 9 8 5 29 29 H 1.08998 * 109.47192 * 335.00165 * 9 8 5 30 30 H 0.96998 * 119.99545 * 180.02562 * 13 12 10 31 31 H 1.07998 * 119.92113 * 180.27974 * 18 4 3 32 32 H 1.07994 * 120.07506 * 179.72400 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 16 4.4567 2.7253 0.0012 6 8 5.7409 2.4531 -0.5428 7 8 3.5713 3.6942 -0.5434 8 7 4.6995 3.1503 1.5832 9 6 3.7056 3.9684 2.2827 10 6 5.8293 2.7373 2.2374 11 1 6.6998 2.4355 1.6740 12 6 5.8556 2.7064 3.6251 13 7 4.7326 2.7880 4.3066 14 14 7.4850 2.5490 4.5249 15 1 8.0938 3.8939 4.6853 16 1 7.2554 1.9469 5.8628 17 1 8.4010 1.6811 3.7421 18 6 4.2816 0.0019 0.0068 19 6 3.6031 -1.1989 0.0010 20 6 2.2067 -1.2081 0.0005 21 6 1.4956 -2.4511 0.0005 22 7 0.9316 -3.4372 0.0015 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6584 2.1293 -0.0008 27 1 3.0237 3.3201 2.8329 28 1 4.2110 4.6382 2.9784 29 1 3.1427 4.5555 1.5572 30 1 4.7511 2.7669 5.2761 31 1 5.3616 0.0106 0.0117 32 1 4.1506 -2.1298 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234260346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:23 Heat of formation + Delta-G solvation = -13.373212 kcal Electronic energy + Delta-G solvation = -19546.665838 eV Core-core repulsion = 16406.816883 eV Total energy + Delta-G solvation = -3139.848955 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.32635 -36.34539 -35.93812 -35.80977 -34.50991 -32.72677 -31.64022 -31.15905 -27.06306 -26.57972 -23.91711 -23.55621 -21.68765 -18.74295 -18.38843 -17.39767 -16.77343 -16.18591 -15.72666 -14.76226 -14.36981 -14.32699 -14.25760 -13.74406 -13.34177 -13.09813 -12.99787 -12.86581 -12.71750 -12.38756 -12.04762 -11.91562 -11.80549 -11.51590 -11.18880 -11.09262 -10.98543 -10.75917 -10.72065 -10.33948 -10.25294 -9.91177 -9.43140 -8.91144 -8.56842 -8.24113 -6.71985 -4.14838 0.69180 1.55155 1.63041 2.66348 2.95154 3.04375 3.09221 3.12666 3.82867 3.91877 3.94411 4.38001 4.64057 4.81741 4.87933 5.00766 5.33723 5.45856 5.58378 5.61570 5.77590 5.84058 5.99962 6.22154 6.29408 6.31210 6.45809 6.61986 6.74734 6.97340 7.05266 7.10254 7.29895 7.47159 8.12294 8.48753 8.95522 10.23273 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.006329 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.830976 B = 4423.053287 C = 4941.755070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.037 4.037 4 C -0.620 4.620 5 S 2.517 3.483 6 O -0.982 6.982 7 O -0.998 6.998 8 N -0.799 5.799 9 C 0.117 3.883 10 C -0.237 4.237 11 H 0.120 0.880 12 C 0.031 3.969 13 N -0.828 5.828 14 Si 0.931 3.069 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.262 1.262 18 C -0.034 4.034 19 C -0.091 4.091 20 C -0.017 4.017 21 C 0.265 3.735 22 N -0.430 5.430 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.140 0.860 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.278 0.722 31 H 0.144 0.856 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 -1.854 -1.527 3.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.056 4.056 4 C -0.697 4.697 5 S 2.614 3.386 6 O -0.972 6.972 7 O -0.988 6.988 8 N -0.622 5.622 9 C -0.029 4.029 10 C -0.387 4.387 11 H 0.138 0.862 12 C -0.183 4.183 13 N -0.467 5.467 14 Si 0.756 3.244 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.186 1.186 18 C -0.053 4.053 19 C -0.112 4.112 20 C -0.020 4.020 21 C -0.049 4.049 22 N -0.106 5.106 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.158 0.842 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.743 -2.984 -2.359 5.337 hybrid contribution 0.423 -0.638 0.893 1.176 sum -3.320 -3.622 -1.467 5.127 Atomic orbital electron populations 1.20877 0.90686 1.03069 1.02979 1.19978 0.95960 0.91873 0.98829 1.20694 0.92743 0.97459 0.94671 1.32951 1.06059 1.24965 1.05710 1.12362 0.73470 0.74450 0.78324 1.93353 1.39139 1.85373 1.79289 1.93341 1.66429 1.59270 1.79725 1.54389 1.24000 1.50661 1.33149 1.21387 0.91522 0.94278 0.95694 1.20145 0.88424 1.39988 0.90106 0.86242 1.25805 0.99148 0.95890 0.97413 1.70108 1.26459 1.41496 1.08646 0.85844 0.80710 0.79349 0.78527 1.19558 1.20534 1.18615 1.20834 1.00609 0.90405 0.93476 1.21233 0.91748 0.99181 0.99042 1.16001 0.92518 0.86209 1.07297 1.25770 0.93019 0.92781 0.93351 1.81196 1.08969 1.11091 1.09336 0.90445 0.90408 0.91940 0.84184 0.92652 0.90723 0.93361 0.91200 0.83831 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.61 36.00 0.35 -1.10 16 2 C -0.06 -0.96 5.91 -104.21 -0.62 -1.58 16 3 C -0.04 -0.63 9.16 -39.64 -0.36 -0.99 16 4 C -0.62 -11.81 5.98 -39.49 -0.24 -12.05 16 5 S 2.52 54.58 5.65 -107.50 -0.61 53.97 16 6 O -0.98 -23.29 16.06 -57.17 -0.92 -24.21 16 7 O -1.00 -22.85 15.82 -57.17 -0.90 -23.76 16 8 N -0.80 -17.78 3.31 -66.69 -0.22 -18.00 16 9 C 0.12 2.42 8.94 59.85 0.53 2.96 16 10 C -0.24 -5.44 9.45 -15.06 -0.14 -5.58 16 11 H 0.12 2.71 7.16 -52.49 -0.38 2.33 16 12 C 0.03 0.68 5.07 -17.43 -0.09 0.60 16 13 N -0.83 -18.72 10.67 55.49 0.59 -18.13 16 14 Si 0.93 17.34 29.58 -169.99 -5.03 12.32 16 15 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 16 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 18 C -0.03 -0.60 9.50 -39.64 -0.38 -0.97 16 19 C -0.09 -1.38 9.76 -39.17 -0.38 -1.76 16 20 C -0.02 -0.25 5.73 -106.93 -0.61 -0.87 16 21 C 0.27 4.00 13.80 -22.47 -0.31 3.69 16 22 N -0.43 -6.96 18.54 41.84 0.78 -6.18 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 25 H 0.06 0.73 7.09 -51.92 -0.37 0.36 16 26 H 0.14 2.24 7.60 -52.49 -0.40 1.84 16 27 H 0.05 1.15 7.40 -51.93 -0.38 0.77 16 28 H 0.07 1.56 7.22 -51.93 -0.37 1.19 16 29 H 0.05 0.92 6.91 -51.93 -0.36 0.56 16 30 H 0.28 5.89 8.31 -40.82 -0.34 5.55 16 31 H 0.14 2.41 7.61 -52.49 -0.40 2.01 16 32 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -27.22 297.44 -7.14 -34.35 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -3.06 Total: 2.80 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.25 Total: -17.65 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 1.15 Total: -42.31 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -1.82 Total: -47.96 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 54.58 SS G_CDS: -0.61 Total: 53.97 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.22 -7.14 -34.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234260346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.980 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds