Wall clock time and date at job start Tue Mar 31 2020 01:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37976 * 120.07670 * 2 1 4 4 C 1.38335 * 120.14969 * 179.97438 * 3 2 1 5 5 S 1.76208 * 119.84450 * 180.02562 * 4 3 2 6 6 O 1.42097 * 106.40220 * 203.53991 * 5 4 3 7 7 O 1.42105 * 106.40051 * 336.46097 * 5 4 3 8 8 N 1.65600 * 107.21640 * 90.00204 * 5 4 3 9 9 C 1.46506 * 119.99795 * 269.99879 * 8 5 4 10 10 C 1.36933 * 119.99778 * 90.00236 * 8 5 4 11 11 H 1.07995 * 120.00391 * 20.61735 * 10 8 5 12 12 C 1.38822 * 119.99491 * 200.61391 * 10 8 5 13 13 N 1.31619 * 119.99931 * 14.76158 * 12 10 8 14 14 Si 1.86795 * 119.99552 * 194.75941 * 12 10 8 15 15 H 1.48502 * 109.46989 * 85.01125 * 14 12 10 16 16 H 1.48498 * 109.47135 * 205.00490 * 14 12 10 17 17 H 1.48491 * 109.47458 * 325.00738 * 14 12 10 18 18 C 1.38388 * 120.30730 * 359.72577 * 4 3 2 19 19 C 1.37926 * 120.14983 * 0.55236 * 18 4 3 20 20 C 1.39616 * 120.08194 * 179.97438 * 2 1 3 21 21 C 1.43205 * 120.14533 * 0.02562 * 20 2 1 22 22 N 3.48499 * 80.49791 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.47722 * 270.02220 * 1 2 3 24 24 H 1.09000 * 109.47126 * 30.02812 * 1 2 3 25 25 H 1.09010 * 109.47023 * 150.01994 * 1 2 3 26 26 H 1.08001 * 119.92055 * 359.95319 * 3 2 1 27 27 H 1.08994 * 109.46904 * 95.00105 * 9 8 5 28 28 H 1.08996 * 109.46823 * 215.00498 * 9 8 5 29 29 H 1.08998 * 109.47192 * 335.00165 * 9 8 5 30 30 H 0.96998 * 119.99545 * 180.02562 * 13 12 10 31 31 H 1.07998 * 119.92113 * 180.27974 * 18 4 3 32 32 H 1.07994 * 120.07506 * 179.72400 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 16 4.4567 2.7253 0.0012 6 8 5.7409 2.4531 -0.5428 7 8 3.5713 3.6942 -0.5434 8 7 4.6995 3.1503 1.5832 9 6 3.7056 3.9684 2.2827 10 6 5.8293 2.7373 2.2374 11 1 6.6998 2.4355 1.6740 12 6 5.8556 2.7064 3.6251 13 7 4.7326 2.7880 4.3066 14 14 7.4850 2.5490 4.5249 15 1 8.0938 3.8939 4.6853 16 1 7.2554 1.9469 5.8628 17 1 8.4010 1.6811 3.7421 18 6 4.2816 0.0019 0.0068 19 6 3.6031 -1.1989 0.0010 20 6 2.2067 -1.2081 0.0005 21 6 1.4956 -2.4511 0.0005 22 7 0.9316 -3.4372 0.0015 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6584 2.1293 -0.0008 27 1 3.0237 3.3201 2.8329 28 1 4.2110 4.6382 2.9784 29 1 3.1427 4.5555 1.5572 30 1 4.7511 2.7669 5.2761 31 1 5.3616 0.0106 0.0117 32 1 4.1506 -2.1298 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234260346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:22 Heat of formation + Delta-G solvation = -29.330696 kcal Electronic energy + Delta-G solvation = -19547.357806 eV Core-core repulsion = 16406.816883 eV Total energy + Delta-G solvation = -3140.540924 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62153 -37.79913 -37.61920 -37.46325 -36.38724 -33.94544 -33.29625 -32.50160 -28.29815 -28.15550 -25.44269 -25.11013 -22.95595 -20.33708 -19.80207 -19.04419 -18.43125 -17.88840 -17.10566 -16.37014 -15.96576 -15.59498 -15.48541 -15.11155 -15.00977 -14.47969 -14.25378 -14.17760 -14.00428 -13.68610 -13.58176 -13.22595 -13.09136 -13.03554 -12.96858 -12.70595 -12.63241 -12.31281 -12.18838 -12.08247 -11.88401 -11.52633 -11.06521 -10.28091 -9.92127 -9.81720 -8.33475 -5.88643 -0.66062 -0.07166 0.26339 1.43955 1.54983 1.58223 1.63952 1.67394 2.30506 2.56974 2.64595 2.77347 2.98322 3.27304 3.56768 3.70664 3.94488 4.23633 4.29869 4.47238 4.61005 4.62708 4.68263 4.85111 4.96426 5.08986 5.13612 5.20910 5.22192 5.30131 5.43832 5.65303 5.73738 6.24902 6.44822 6.84365 7.28373 8.63587 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.006329 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.830976 B = 4423.053287 C = 4941.755070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.057 4.057 3 C -0.045 4.045 4 C -0.642 4.642 5 S 2.558 3.442 6 O -1.004 7.004 7 O -1.011 7.011 8 N -0.819 5.819 9 C 0.125 3.875 10 C -0.278 4.278 11 H 0.111 0.889 12 C 0.003 3.997 13 N -0.859 5.859 14 Si 0.984 3.016 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.260 1.260 18 C -0.048 4.048 19 C -0.081 4.081 20 C -0.011 4.011 21 C 0.282 3.718 22 N -0.442 5.442 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.149 0.851 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.279 0.721 31 H 0.145 0.855 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -3.174 -1.964 5.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.060 4.060 3 C -0.065 4.065 4 C -0.724 4.724 5 S 2.657 3.343 6 O -0.994 6.994 7 O -1.001 7.001 8 N -0.645 5.645 9 C -0.020 4.020 10 C -0.423 4.423 11 H 0.129 0.871 12 C -0.207 4.207 13 N -0.498 5.498 14 Si 0.807 3.193 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.184 1.184 18 C -0.067 4.067 19 C -0.102 4.102 20 C -0.015 4.015 21 C -0.033 4.033 22 N -0.118 5.118 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.166 0.834 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.630 -4.264 -2.748 6.868 hybrid contribution 0.531 -0.348 0.786 1.011 sum -4.099 -4.613 -1.962 6.475 Atomic orbital electron populations 1.20981 0.88207 1.04333 1.04136 1.20267 0.97714 0.90987 0.97027 1.20851 0.91995 0.98820 0.94788 1.32363 1.07042 1.23804 1.09235 1.09752 0.72871 0.74601 0.77050 1.93336 1.40595 1.86015 1.79494 1.93334 1.66723 1.60291 1.79741 1.53995 1.25000 1.52921 1.32554 1.21296 0.91072 0.93971 0.95693 1.20097 0.89026 1.42506 0.90720 0.87106 1.26344 1.01547 0.95345 0.97491 1.70163 1.27578 1.43365 1.08725 0.85055 0.77684 0.79147 0.77415 1.19479 1.20311 1.18428 1.20954 1.00905 0.90804 0.94006 1.21498 0.91914 0.99538 0.97259 1.16114 0.92654 0.86364 1.06320 1.25506 0.92554 0.92320 0.92892 1.81237 1.09425 1.11474 1.09637 0.89208 0.88637 0.91266 0.83356 0.93138 0.91593 0.92263 0.91135 0.83752 0.81891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.61 71.23 0.68 -1.81 16 2 C -0.06 -1.56 5.91 -19.60 -0.12 -1.68 16 3 C -0.05 -1.48 9.16 22.23 0.20 -1.27 16 4 C -0.64 -23.87 5.98 22.33 0.13 -23.74 16 5 S 2.56 110.89 5.65 -56.49 -0.32 110.57 16 6 O -1.00 -47.95 16.06 -128.00 -2.06 -50.00 16 7 O -1.01 -45.78 15.82 -128.00 -2.02 -47.80 16 8 N -0.82 -37.09 3.31 -364.90 -1.21 -38.30 16 9 C 0.13 5.28 8.94 127.77 1.14 6.42 16 10 C -0.28 -13.06 9.45 84.04 0.79 -12.26 16 11 H 0.11 5.21 7.16 -2.91 -0.02 5.18 16 12 C 0.00 0.12 5.07 84.86 0.43 0.55 16 13 N -0.86 -39.59 10.67 21.65 0.23 -39.36 16 14 Si 0.98 35.91 29.58 68.60 2.03 37.94 16 15 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 16 H -0.28 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 18 C -0.05 -1.60 9.50 22.23 0.21 -1.39 16 19 C -0.08 -2.24 9.76 22.54 0.22 -2.02 16 20 C -0.01 -0.30 5.73 -21.36 -0.12 -0.42 16 21 C 0.28 7.59 13.80 88.33 1.22 8.81 16 22 N -0.44 -12.99 18.54 19.00 0.35 -12.63 16 23 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 25 H 0.07 1.37 7.09 -2.38 -0.02 1.36 16 26 H 0.15 4.50 7.60 -2.91 -0.02 4.47 16 27 H 0.05 2.13 7.40 -2.39 -0.02 2.12 16 28 H 0.07 2.84 7.22 -2.39 -0.02 2.82 16 29 H 0.06 2.28 6.91 -2.39 -0.02 2.26 16 30 H 0.28 12.04 8.31 -92.71 -0.77 11.27 16 31 H 0.14 4.76 7.61 -2.91 -0.02 4.74 16 32 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -57.17 297.44 2.96 -54.21 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.15 Total: 14.18 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.80 Total: -28.81 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -0.62 Total: -90.29 kcal Atomic # 8 Polarization: -93.72 SS G_CDS: -4.08 Total: -97.80 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Atomic # 16 Polarization: 110.89 SS G_CDS: -0.32 Total: 110.57 kcal Total: -57.17 2.96 -54.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234260346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.876 kcal (2) G-P(sol) polarization free energy of solvation -57.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds