Wall clock time and date at job start Tue Mar 31 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37970 * 119.92063 * 2 1 4 4 C 1.39617 * 119.84670 * 180.23290 * 3 2 1 5 5 C 1.43192 * 120.15180 * 179.74361 * 4 3 2 6 6 N 4.80130 * 134.69811 * 359.74915 * 2 1 3 7 7 C 1.39655 * 119.69446 * 359.47645 * 4 3 2 8 8 C 1.37921 * 119.84730 * 0.26634 * 7 4 3 9 9 C 1.38336 * 119.92844 * 179.72784 * 2 1 3 10 10 S 1.76205 * 119.84731 * 0.02562 * 9 2 1 11 11 O 1.42098 * 106.40050 * 178.42975 * 10 9 2 12 12 O 1.42096 * 106.40200 * 311.35219 * 10 9 2 13 13 N 1.65603 * 107.21619 * 64.89109 * 10 9 2 14 14 C 1.46495 * 120.00181 * 63.47359 * 13 10 9 15 15 C 1.50695 * 109.47481 * 163.81948 * 14 13 10 16 16 H 1.08009 * 120.00032 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00282 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99873 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00112 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47059 * 89.99731 * 19 17 15 21 21 H 1.48498 * 109.47329 * 209.99819 * 19 17 15 22 22 H 1.48503 * 109.47001 * 329.99969 * 19 17 15 23 23 H 1.09008 * 109.47052 * 264.77534 * 1 2 3 24 24 H 1.08995 * 109.47768 * 24.77855 * 1 2 3 25 25 H 1.09002 * 109.47184 * 144.78136 * 1 2 3 26 26 H 1.07999 * 120.08467 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.07739 * 180.29936 * 7 4 3 28 28 H 1.08003 * 119.92470 * 180.02562 * 8 7 4 29 29 H 0.96998 * 120.00063 * 243.47762 * 13 10 9 30 30 H 1.09001 * 109.47315 * 283.82147 * 14 13 10 31 31 H 1.09001 * 109.47075 * 43.82287 * 14 13 10 32 32 H 0.97000 * 119.99547 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1951 1.1958 0.0000 4 6 3.5913 1.1940 -0.0049 5 6 4.3121 2.4313 -0.0105 6 7 4.8840 3.4128 -0.0149 7 6 4.2816 -0.0200 0.0013 8 6 3.5809 -1.2080 0.0066 9 6 2.1971 -1.1989 0.0057 10 16 1.3101 -2.7214 0.0122 11 8 2.2856 -3.7541 -0.0201 12 8 0.3296 -2.6101 1.0346 13 7 0.4840 -2.8135 -1.4200 14 6 1.2178 -2.8710 -2.6866 15 6 0.2953 -3.3427 -3.7808 16 1 -0.7350 -3.5759 -3.5554 17 6 0.7660 -3.4756 -5.0699 18 7 -0.0391 -3.8878 -6.0247 19 14 2.5475 -3.0717 -5.4600 20 1 3.3791 -4.2910 -5.2953 21 1 2.6503 -2.5878 -6.8601 22 1 3.0296 -2.0151 -4.5345 23 1 -0.3633 -0.0936 1.0235 24 1 -0.3634 0.9330 -0.4307 25 1 -0.3633 -0.8396 -0.5927 26 1 1.6552 2.1312 -0.0004 27 1 5.3616 -0.0286 0.0024 28 1 4.1135 -2.1476 0.0118 29 1 -0.4859 -2.8293 -1.4203 30 1 1.5961 -1.8788 -2.9328 31 1 2.0530 -3.5649 -2.5914 32 1 0.2920 -3.9809 -6.9317 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235774759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:35 Heat of formation + Delta-G solvation = -19.414705 kcal Electronic energy + Delta-G solvation = -19303.513798 eV Core-core repulsion = 16163.402864 eV Total energy + Delta-G solvation = -3140.110934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.85753 -37.04429 -36.81536 -35.58703 -34.97008 -33.21056 -32.26618 -31.78536 -27.59013 -27.19546 -24.70671 -22.35167 -22.10746 -19.48446 -18.64373 -17.96297 -17.34140 -16.49025 -16.19656 -15.36654 -14.78551 -14.62124 -14.50990 -14.21838 -13.76140 -13.59956 -13.46862 -13.23868 -13.02420 -12.78057 -12.55856 -12.33761 -12.16704 -12.07535 -11.81583 -11.67290 -11.50629 -10.98684 -10.83550 -10.64767 -10.06098 -9.60955 -9.55456 -9.10979 -8.98508 -8.60437 -6.25325 -4.27329 0.07103 0.71076 0.99747 2.30042 2.43638 3.19173 3.25201 3.26711 3.33211 3.43031 3.51583 3.97259 4.25614 4.34246 4.46868 4.69651 4.83400 5.06844 5.10322 5.20419 5.32334 5.54039 5.55930 5.70081 5.85561 5.93811 5.98520 6.08208 6.44406 6.74581 6.82174 7.09318 7.29913 7.69271 8.29498 8.75994 9.32417 10.86927 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.006515 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.995527 B = 4296.991035 C = 5219.097002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.025 3.975 3 C -0.096 4.096 4 C 0.023 3.977 5 C 0.254 3.746 6 N -0.408 5.408 7 C -0.101 4.101 8 C -0.017 4.017 9 C -0.651 4.651 10 S 2.689 3.311 11 O -0.959 6.959 12 O -0.966 6.966 13 N -1.094 6.094 14 C 0.217 3.783 15 C -0.532 4.532 16 H 0.084 0.916 17 C 0.077 3.923 18 N -0.890 5.890 19 Si 0.870 3.130 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.262 1.262 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.156 0.844 29 H 0.417 0.583 30 H 0.021 0.979 31 H 0.033 0.967 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 7.871 11.875 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.117 4.117 4 C 0.019 3.981 5 C -0.062 4.062 6 N -0.083 5.083 7 C -0.123 4.123 8 C -0.036 4.036 9 C -0.736 4.736 10 S 2.776 3.224 11 O -0.949 6.949 12 O -0.956 6.956 13 N -0.857 5.857 14 C 0.092 3.908 15 C -0.571 4.571 16 H 0.102 0.898 17 C -0.128 4.128 18 N -0.528 5.528 19 Si 0.696 3.304 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.187 1.187 23 H 0.118 0.882 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.173 0.827 29 H 0.253 0.747 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.429 8.767 12.322 16.068 hybrid contribution 0.637 0.546 -0.799 1.158 sum 6.066 9.312 11.524 16.010 Atomic orbital electron populations 1.21344 0.89315 1.05037 1.04880 1.19479 0.96493 0.91075 0.90619 1.21155 0.91820 0.98755 1.00008 1.16206 0.92413 0.87117 1.02334 1.25678 0.93544 0.92914 0.94068 1.81261 1.08399 1.10705 1.07891 1.21256 1.00597 0.90574 0.99831 1.20971 0.91946 0.99408 0.91306 1.31384 1.06644 1.20956 1.14631 1.02070 0.73609 0.73701 0.73067 1.93565 1.62240 1.52520 1.86569 1.93577 1.59124 1.87075 1.55803 1.55277 1.18513 1.90002 1.21919 1.19488 0.93298 0.96578 0.81421 1.21017 0.98479 1.46374 0.91263 0.89842 1.24841 0.97692 0.94228 0.95997 1.69872 1.35645 1.45663 1.01594 0.86943 0.85439 0.79724 0.78306 1.19532 1.20807 1.18677 0.88172 0.89666 0.89970 0.84077 0.84073 0.82689 0.74673 0.96133 0.94964 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.59 36.00 0.31 -1.28 16 2 C 0.02 0.29 5.87 -104.69 -0.61 -0.32 16 3 C -0.10 -0.99 9.38 -39.17 -0.37 -1.36 16 4 C 0.02 0.24 5.73 -106.93 -0.61 -0.37 16 5 C 0.25 2.88 15.33 -22.48 -0.34 2.53 16 6 N -0.41 -5.38 18.54 41.84 0.78 -4.61 16 7 C -0.10 -1.04 9.76 -39.17 -0.38 -1.43 16 8 C -0.02 -0.21 9.53 -39.64 -0.38 -0.59 16 9 C -0.65 -8.82 5.86 -39.49 -0.23 -9.05 16 10 S 2.69 42.79 4.94 -107.50 -0.53 42.26 16 11 O -0.96 -17.69 16.46 -57.17 -0.94 -18.63 16 12 O -0.97 -15.91 16.45 -57.17 -0.94 -16.85 16 13 N -1.09 -19.08 4.77 -11.66 -0.06 -19.13 16 14 C 0.22 4.60 5.03 -5.20 -0.03 4.57 16 15 C -0.53 -13.65 9.83 -34.44 -0.34 -13.98 16 16 H 0.08 2.27 7.91 -52.48 -0.41 1.85 16 17 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.89 -25.47 13.96 55.43 0.77 -24.69 16 19 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 23 H 0.10 0.99 8.00 -51.92 -0.42 0.57 16 24 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 25 H 0.08 0.96 5.42 -51.93 -0.28 0.68 16 26 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.16 1.70 7.32 -52.48 -0.38 1.32 16 29 H 0.42 6.65 8.20 -34.47 -0.28 6.37 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 31 H 0.03 0.70 7.19 -51.93 -0.37 0.33 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 297.42 15.07 4.48 4.48 Total: -1.00 -31.51 297.42 -7.14 -38.66 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -2.96 Total: 2.72 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -3.08 Total: -19.32 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 1.49 Total: -48.43 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.88 Total: -35.48 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Atomic # 16 Polarization: 42.79 SS G_CDS: -0.53 Total: 42.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.51 -7.14 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235774759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.245 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds