Wall clock time and date at job start Tue Mar 31 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00059 * 3 2 1 5 5 H 1.48503 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99690 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 N 1.31132 * 126.54884 * 89.71197 * 11 10 9 13 13 C 1.34497 * 105.61320 * 179.97438 * 12 11 10 14 14 C 1.50696 * 126.28407 * 180.12632 * 13 12 11 15 15 O 1.42903 * 109.47330 * 270.23553 * 14 13 12 16 16 C 1.42904 * 113.99971 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46885 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.47120 * 60.00505 * 17 16 15 19 19 F 1.39891 * 109.47032 * 180.02562 * 17 16 15 20 20 F 1.39896 * 109.47557 * 300.00509 * 17 16 15 21 21 N 1.29947 * 107.42482 * 0.35093 * 13 12 11 22 22 O 1.21303 * 110.25028 * 359.77905 * 21 13 12 23 23 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 28 28 H 1.09000 * 109.47387 * 30.24031 * 14 13 12 29 29 H 1.09004 * 109.47020 * 150.24037 * 14 13 12 30 30 H 1.09000 * 109.46979 * 300.00455 * 16 15 14 31 31 H 1.09000 * 109.46753 * 60.00363 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 7 1.0960 -5.6412 -1.0519 13 6 0.4706 -6.7304 -0.5708 14 6 -0.1642 -7.8273 -1.3862 15 8 -1.5310 -7.4991 -1.6441 16 6 -2.2289 -8.4797 -2.4144 17 6 -3.6743 -8.0260 -2.6285 18 9 -3.6834 -6.8044 -3.3104 19 9 -4.3576 -8.9862 -3.3821 20 9 -4.3035 -7.8725 -1.3885 21 7 0.5102 -6.6608 0.7262 22 8 1.0923 -5.6553 1.0751 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8904 26 1 2.8716 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.3687 -7.9325 -2.3312 29 1 -0.1140 -8.7659 -0.8342 30 1 -1.7388 -8.5989 -3.3807 31 1 -2.2214 -9.4316 -1.8833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236130050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:11 Heat of formation + Delta-G solvation = -139.553806 kcal Electronic energy + Delta-G solvation = -21111.613108 eV Core-core repulsion = 16981.682941 eV Total energy + Delta-G solvation = -4129.930168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.31881 -47.89223 -47.74478 -45.28847 -38.67560 -35.66592 -34.52592 -32.65023 -30.78894 -30.08710 -27.54979 -25.88786 -23.59331 -23.37694 -22.11351 -20.61114 -18.92840 -18.84501 -18.20955 -17.79041 -17.21286 -16.63086 -16.45401 -16.09544 -15.01797 -14.70542 -14.64464 -14.55135 -14.23261 -14.13435 -13.92930 -13.92343 -13.42588 -13.03533 -12.69757 -12.43035 -12.09746 -12.02529 -11.61211 -11.25893 -10.98408 -10.83210 -10.72142 -10.39978 -10.14048 -10.10564 -9.38009 -9.25946 -8.44684 -6.08712 -4.14158 1.35403 1.99923 2.48371 3.09291 3.24801 3.30541 3.35735 3.37384 3.47908 3.68905 3.80011 4.13336 4.30881 4.40092 4.53075 4.63427 4.74374 5.00129 5.27634 5.42577 5.88190 6.00570 6.18363 6.24717 6.31849 6.58710 7.48501 7.55391 7.85920 8.20919 8.42086 8.90884 9.50826 11.02413 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.003449 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.311033 B = 8115.348434 C = 9067.929512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.219 3.781 12 N -0.484 5.484 13 C 0.155 3.845 14 C 0.167 3.833 15 O -0.365 6.365 16 C 0.020 3.980 17 C 0.462 3.538 18 F -0.171 7.171 19 F -0.178 7.178 20 F -0.174 7.174 21 N -0.377 5.377 22 O 0.078 5.922 23 H 0.264 0.736 24 H 0.027 0.973 25 H 0.024 0.976 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -19.291 -4.810 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.068 4.068 11 C 0.000 4.000 12 N -0.218 5.218 13 C -0.118 4.118 14 C 0.089 3.911 15 O -0.282 6.282 16 C -0.059 4.059 17 C 0.408 3.592 18 F -0.153 7.153 19 F -0.159 7.159 20 F -0.156 7.156 21 N -0.086 5.086 22 O 0.018 5.982 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.992 -19.711 -4.691 20.481 hybrid contribution 0.207 0.919 -0.099 0.948 sum -2.785 -18.791 -4.790 19.591 Atomic orbital electron populations 1.69958 1.06168 1.27138 1.49538 1.25016 0.94862 0.99445 0.94874 0.86561 0.79495 0.82685 0.78705 1.20092 1.21248 1.20073 1.21016 0.93105 0.90183 1.52341 0.92052 1.19171 0.93568 0.89767 0.98612 1.20812 0.97997 0.83443 1.04543 1.29701 0.93921 0.97074 0.79319 1.71916 1.16176 1.04587 1.29117 1.25044 1.01137 0.97144 0.88459 1.20349 0.80611 0.92071 0.98029 1.88009 1.23467 1.43851 1.72902 1.23524 0.88618 0.93826 0.99938 1.20102 0.89148 0.75569 0.74421 1.93259 1.96936 1.45045 1.80029 1.93204 1.81827 1.64015 1.76877 1.93235 1.84497 1.95479 1.42368 1.74556 1.14443 1.04282 1.15336 1.85295 1.51867 1.24712 1.36320 0.92641 0.95441 0.95735 0.88893 0.88023 0.89134 0.89779 0.88040 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.66 4.95 -27.89 -0.14 0.53 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 4.08 7.77 -13.05 -0.10 3.98 16 12 N -0.48 -9.06 11.55 -9.87 -0.11 -9.18 16 13 C 0.16 2.58 7.85 -156.37 -1.23 1.35 16 14 C 0.17 1.92 6.56 36.00 0.24 2.16 16 15 O -0.36 -4.74 10.21 -35.23 -0.36 -5.10 16 16 C 0.02 0.16 5.90 37.16 0.22 0.38 16 17 C 0.46 4.88 3.32 37.16 0.12 5.00 16 18 F -0.17 -2.25 17.26 2.25 0.04 -2.21 16 19 F -0.18 -1.66 17.32 2.25 0.04 -1.62 16 20 F -0.17 -2.19 17.26 2.25 0.04 -2.15 16 21 N -0.38 -6.69 12.16 30.90 0.38 -6.32 16 22 O 0.08 1.44 11.31 18.11 0.20 1.64 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 27 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -32.14 299.09 -3.94 -36.08 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -2.92 Total: -5.90 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.46 Total: -0.09 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 1.00 Total: -40.99 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.16 Total: -3.45 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.12 Total: -5.99 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.14 -3.94 -36.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236130050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.476 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds