Wall clock time and date at job start Tue Mar 31 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00059 * 3 2 1 5 5 H 1.48503 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99690 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 N 1.31132 * 126.54884 * 89.71197 * 11 10 9 13 13 C 1.34497 * 105.61320 * 179.97438 * 12 11 10 14 14 C 1.50696 * 126.28407 * 180.12632 * 13 12 11 15 15 O 1.42903 * 109.47330 * 270.23553 * 14 13 12 16 16 C 1.42904 * 113.99971 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46885 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.47120 * 60.00505 * 17 16 15 19 19 F 1.39891 * 109.47032 * 180.02562 * 17 16 15 20 20 F 1.39896 * 109.47557 * 300.00509 * 17 16 15 21 21 N 1.29947 * 107.42482 * 0.35093 * 13 12 11 22 22 O 1.21303 * 110.25028 * 359.77905 * 21 13 12 23 23 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 28 28 H 1.09000 * 109.47387 * 30.24031 * 14 13 12 29 29 H 1.09004 * 109.47020 * 150.24037 * 14 13 12 30 30 H 1.09000 * 109.46979 * 300.00455 * 16 15 14 31 31 H 1.09000 * 109.46753 * 60.00363 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 7 1.0960 -5.6412 -1.0519 13 6 0.4706 -6.7304 -0.5708 14 6 -0.1642 -7.8273 -1.3862 15 8 -1.5310 -7.4991 -1.6441 16 6 -2.2289 -8.4797 -2.4144 17 6 -3.6743 -8.0260 -2.6285 18 9 -3.6834 -6.8044 -3.3104 19 9 -4.3576 -8.9862 -3.3821 20 9 -4.3035 -7.8725 -1.3885 21 7 0.5102 -6.6608 0.7262 22 8 1.0923 -5.6553 1.0751 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8904 26 1 2.8716 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.3687 -7.9325 -2.3312 29 1 -0.1140 -8.7659 -0.8342 30 1 -1.7388 -8.5989 -3.3807 31 1 -2.2214 -9.4316 -1.8833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236130050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:11 Heat of formation + Delta-G solvation = -162.439989 kcal Electronic energy + Delta-G solvation = -21112.605528 eV Core-core repulsion = 16981.682941 eV Total energy + Delta-G solvation = -4130.922587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.16926 -48.71341 -48.67151 -46.65605 -39.51846 -37.07206 -36.19341 -34.42334 -32.19614 -31.19141 -28.52875 -27.75232 -24.85723 -24.35203 -23.75602 -22.10353 -19.77722 -19.69634 -19.30418 -18.97355 -18.62803 -18.24847 -17.47498 -16.97610 -16.49356 -16.11045 -15.71936 -15.54718 -15.48441 -15.10163 -14.98710 -14.84004 -14.81493 -14.33919 -13.90918 -13.65876 -13.46365 -13.33974 -12.99648 -12.76720 -12.68190 -12.44477 -12.18065 -11.92654 -11.87300 -11.35942 -11.13696 -10.88336 -10.55066 -8.19109 -6.31788 0.00354 0.86403 1.47041 1.50173 1.53279 1.57772 1.79434 2.20260 2.44856 2.63746 2.83224 2.94491 2.96060 3.16335 3.48981 3.82230 4.00832 4.07358 4.09730 4.28745 4.48601 4.53158 4.62432 4.85868 4.95640 5.44287 5.53117 5.55345 5.78307 6.13500 6.84382 7.03150 7.38762 8.93178 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.003449 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.311033 B = 8115.348434 C = 9067.929512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.032 3.968 10 C -0.014 4.014 11 C 0.211 3.789 12 N -0.501 5.501 13 C 0.157 3.843 14 C 0.164 3.836 15 O -0.404 6.404 16 C 0.021 3.979 17 C 0.455 3.545 18 F -0.192 7.192 19 F -0.170 7.170 20 F -0.191 7.191 21 N -0.389 5.389 22 O 0.068 5.932 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.004 1.004 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 -20.442 -5.335 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.099 0.901 9 C -0.006 4.006 10 C -0.053 4.053 11 C -0.008 4.008 12 N -0.236 5.236 13 C -0.117 4.117 14 C 0.088 3.912 15 O -0.323 6.323 16 C -0.056 4.056 17 C 0.401 3.599 18 F -0.174 7.174 19 F -0.152 7.152 20 F -0.173 7.173 21 N -0.101 5.101 22 O 0.011 5.989 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.014 0.986 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.152 0.848 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.350 -20.874 -5.204 21.556 hybrid contribution -0.388 1.182 0.026 1.244 sum -1.737 -19.693 -5.177 20.436 Atomic orbital electron populations 1.70123 1.08204 1.28002 1.51325 1.26036 0.95638 1.03728 0.94523 0.85405 0.78064 0.77518 0.79490 1.18850 1.21663 1.18617 1.21553 0.94247 0.90886 1.51018 0.90082 1.18958 0.94050 0.92150 0.95480 1.20555 0.96660 0.81390 1.06668 1.29585 0.94199 0.97294 0.79716 1.71931 1.16669 1.05523 1.29451 1.26015 0.99889 0.97293 0.88461 1.20735 0.80153 0.91161 0.99165 1.87916 1.24197 1.46172 1.74050 1.23826 0.86296 0.93810 1.01666 1.20594 0.90640 0.75008 0.73663 1.93215 1.97100 1.46620 1.80435 1.93213 1.81925 1.63433 1.76612 1.93199 1.85053 1.95570 1.43450 1.74543 1.15009 1.04329 1.16212 1.85274 1.52192 1.25105 1.36374 0.92813 0.99068 0.98589 0.86259 0.86437 0.86339 0.86296 0.84815 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.29 21.45 0.28 -56.38 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.54 -28.59 9.11 25.60 0.23 -28.36 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 9 C 0.03 1.61 4.95 29.85 0.15 1.76 16 10 C -0.01 -0.52 5.78 29.85 0.17 -0.34 16 11 C 0.21 7.83 7.77 88.38 0.69 8.52 16 12 N -0.50 -18.44 11.55 -303.19 -3.50 -21.94 16 13 C 0.16 5.01 7.85 138.46 1.09 6.10 16 14 C 0.16 3.32 6.56 71.23 0.47 3.79 16 15 O -0.40 -9.71 10.21 -148.98 -1.52 -11.24 16 16 C 0.02 0.29 5.90 71.98 0.42 0.71 16 17 C 0.46 9.11 3.32 71.98 0.24 9.34 16 18 F -0.19 -5.03 17.26 44.97 0.78 -4.25 16 19 F -0.17 -2.93 17.32 44.97 0.78 -2.16 16 20 F -0.19 -4.76 17.26 44.97 0.78 -3.98 16 21 N -0.39 -13.56 12.16 -60.31 -0.73 -14.29 16 22 O 0.07 2.47 11.31 74.86 0.85 3.32 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 26 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 27 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 28 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.13 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.76 299.09 4.82 -66.93 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: 1.17 Total: -2.47 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 3.92 Total: 1.91 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -3.95 Total: -92.61 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.68 Total: -7.92 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 2.33 Total: -10.39 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.76 4.82 -66.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236130050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.507 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds