Wall clock time and date at job start Tue Mar 31 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48499 * 109.47132 * 269.99889 * 3 2 1 5 5 H 1.48504 * 109.47180 * 29.99504 * 3 2 1 6 6 H 1.48500 * 109.47694 * 149.99773 * 3 2 1 7 7 C 1.37874 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99791 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00570 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47674 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47288 * 179.97438 * 10 9 7 12 12 N 1.30977 * 126.43351 * 90.00507 * 11 10 9 13 13 C 1.35214 * 105.57643 * 179.97438 * 12 11 10 14 14 C 1.48428 * 126.41584 * 179.97438 * 13 12 11 15 15 C 1.39305 * 120.09264 * 359.69565 * 14 13 12 16 16 C 1.38260 * 119.90087 * 179.71913 * 15 14 13 17 17 F 1.35103 * 119.95230 * 180.27491 * 16 15 14 18 18 C 1.38494 * 120.09889 * 0.55898 * 16 15 14 19 19 C 1.38502 * 120.19130 * 359.72010 * 18 16 15 20 20 F 1.35103 * 119.95664 * 180.02562 * 19 18 16 21 21 C 1.38265 * 120.09416 * 359.97438 * 19 18 16 22 22 N 1.30764 * 107.17581 * 359.97438 * 13 12 11 23 23 O 1.21295 * 110.09191 * 0.02562 * 22 13 12 24 24 H 0.97000 * 120.00198 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47234 * 59.99365 * 9 7 2 26 26 H 1.09000 * 109.46928 * 300.00203 * 9 7 2 27 27 H 1.09000 * 109.46723 * 59.99655 * 10 9 7 28 28 H 1.09000 * 109.47255 * 300.00181 * 10 9 7 29 29 H 1.07998 * 120.04457 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.91197 * 179.74013 * 18 16 15 31 31 H 1.07995 * 120.05155 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 7 6.3065 -2.6356 1.0560 13 6 7.5701 -2.6365 0.5745 14 6 8.8188 -2.6356 1.3769 15 6 8.7548 -2.6272 2.7685 16 6 9.9204 -2.6322 3.5121 17 9 9.8595 -2.6297 4.8617 18 6 11.1503 -2.6339 2.8754 19 6 11.2186 -2.6364 1.4921 20 9 12.4210 -2.6385 0.8760 21 6 10.0580 -2.6377 0.7407 22 7 7.4861 -2.6383 -0.7304 23 8 6.3225 -2.6381 -1.0731 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 3.6586 -3.1509 -0.8875 28 1 3.6580 -3.1498 0.8924 29 1 7.7961 -2.6218 3.2657 30 1 12.0590 -2.6336 3.4593 31 1 10.1120 -2.6393 -0.3379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236162146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:35 Heat of formation + Delta-G solvation = -22.139450 kcal Electronic energy + Delta-G solvation = -20107.266233 eV Core-core repulsion = 16413.196759 eV Total energy + Delta-G solvation = -3694.069474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.17182 -50.14551 -46.68947 -40.15954 -37.15914 -36.23775 -34.52048 -32.79198 -31.81543 -31.45977 -28.05387 -26.28327 -24.80026 -23.73564 -23.25951 -22.03029 -19.66378 -19.22959 -18.91981 -18.40475 -17.94313 -17.58576 -17.14440 -16.76445 -16.45234 -16.36355 -16.09849 -15.71669 -15.39291 -15.00866 -14.71109 -14.07956 -13.95875 -13.73886 -13.64325 -13.20509 -12.92356 -12.89245 -12.79252 -12.39053 -12.24286 -11.96185 -11.77302 -11.44480 -11.19862 -10.76153 -10.07179 -10.02298 -8.28502 -6.32888 -0.77354 -0.28211 0.14107 1.13278 1.36676 1.39712 1.48555 1.69836 2.08553 2.20556 2.35695 2.63807 2.75250 3.07500 3.24930 3.55836 3.58048 3.76537 3.86201 4.13913 4.36622 4.39438 4.46655 4.52499 4.70106 4.73061 4.81687 4.87799 4.95313 5.25704 5.36497 5.46846 5.58896 6.24075 6.75294 6.93768 7.31843 8.87178 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.003552 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.552755 B = 7881.312653 C = 8261.145713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.526 4.526 8 H 0.054 0.946 9 C -0.005 4.005 10 C -0.010 4.010 11 C 0.219 3.781 12 N -0.495 5.495 13 C 0.198 3.802 14 C 0.028 3.972 15 C -0.122 4.122 16 C 0.132 3.868 17 F -0.125 7.125 18 C -0.156 4.156 19 C 0.133 3.867 20 F -0.125 7.125 21 C -0.129 4.129 22 N -0.386 5.386 23 O 0.078 5.922 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.025 0.975 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.153 0.847 30 H 0.183 0.817 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.456 -5.888 4.303 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.044 4.044 10 C -0.049 4.049 11 C -0.001 4.001 12 N -0.229 5.229 13 C -0.072 4.072 14 C 0.026 3.974 15 C -0.143 4.143 16 C 0.113 3.887 17 F -0.104 7.104 18 C -0.176 4.176 19 C 0.114 3.886 20 F -0.103 7.103 21 C -0.149 4.149 22 N -0.094 5.094 23 O 0.019 5.981 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.171 0.829 30 H 0.200 0.800 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 24.119 -5.788 4.215 25.159 hybrid contribution -0.310 0.834 -0.029 0.891 sum 23.808 -4.954 4.186 24.676 Atomic orbital electron populations 1.70019 1.07999 1.28150 1.52209 1.25792 0.95422 1.02863 0.94263 0.85859 0.79388 0.79458 0.79174 1.19102 1.21065 1.17903 1.21256 0.90688 0.93923 1.50578 0.92807 1.19500 0.95040 0.92469 0.97388 1.20394 0.76993 1.00562 1.06964 1.29421 0.99212 0.91915 0.79506 1.72043 0.99653 1.22005 1.29151 1.23977 0.93328 1.02037 0.87867 1.16699 0.87208 1.02315 0.91131 1.21254 0.99722 1.00904 0.92440 1.16942 0.92947 1.01511 0.77339 1.91574 1.97127 1.93634 1.28047 1.21390 0.99272 1.03597 0.93368 1.16877 0.80249 1.01580 0.89921 1.91572 1.42161 1.93660 1.82905 1.21190 0.89754 1.01851 1.02140 1.74823 0.98093 1.21617 1.14884 1.85279 1.11123 1.65586 1.36068 0.92383 0.96072 0.95623 0.86329 0.86622 0.82938 0.79983 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.94 42.51 27.47 68.60 1.88 44.40 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.01 6.54 99.48 0.65 -10.36 16 7 C -0.53 -27.59 9.66 25.60 0.25 -27.35 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C -0.01 -0.23 4.02 29.85 0.12 -0.11 16 10 C -0.01 -0.34 5.78 29.85 0.17 -0.17 16 11 C 0.22 7.01 7.75 88.36 0.68 7.70 16 12 N -0.50 -16.14 11.26 -302.52 -3.41 -19.55 16 13 C 0.20 5.93 7.80 137.30 1.07 7.00 16 14 C 0.03 0.68 5.87 -20.05 -0.12 0.57 16 15 C -0.12 -2.64 9.68 22.53 0.22 -2.42 16 16 C 0.13 2.35 7.29 22.34 0.16 2.51 16 17 F -0.13 -2.32 17.26 44.97 0.78 -1.54 16 18 C -0.16 -2.25 10.00 22.39 0.22 -2.03 16 19 C 0.13 2.25 7.29 22.34 0.16 2.41 16 20 F -0.12 -2.12 17.26 44.97 0.78 -1.34 16 21 C -0.13 -2.60 9.67 22.53 0.22 -2.38 16 22 N -0.39 -11.95 11.86 -59.14 -0.70 -12.65 16 23 O 0.08 2.47 11.29 74.69 0.84 3.31 16 24 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 25 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 26 H 0.03 1.06 7.57 -2.39 -0.02 1.04 16 27 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.15 3.43 7.87 -2.91 -0.02 3.41 16 30 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.15 3.00 7.87 -2.91 -0.02 2.98 16 Total: -1.00 -60.88 292.55 5.23 -55.66 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: 1.13 Total: 0.72 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 3.63 Total: -12.99 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -3.81 Total: -88.21 kcal Atomic # 8 Polarization: 2.47 SS G_CDS: 0.84 Total: 3.31 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 1.55 Total: -2.88 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.40 kcal Total: -60.88 5.23 -55.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236162146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.516 kcal (2) G-P(sol) polarization free energy of solvation -60.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds