Wall clock time and date at job start Tue Mar 31 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47191 * 269.99765 * 3 2 1 5 5 H 1.48493 * 109.47225 * 30.00289 * 3 2 1 6 6 H 1.48505 * 109.46825 * 149.99982 * 3 2 1 7 7 C 1.37876 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46774 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.46775 * 180.02562 * 10 9 7 12 12 N 1.30978 * 126.43688 * 90.26929 * 11 10 9 13 13 C 1.35231 * 105.57629 * 180.13126 * 12 11 10 14 14 C 1.48392 * 126.41066 * 179.88388 * 13 12 11 15 15 C 1.39360 * 120.08169 * 179.71251 * 14 13 12 16 16 C 1.37975 * 119.95011 * 180.02562 * 15 14 13 17 17 C 1.38516 * 120.11915 * 359.97438 * 16 15 14 18 18 F 1.35099 * 119.91105 * 180.02562 * 17 16 15 19 19 C 1.38749 * 120.16973 * 0.02562 * 17 16 15 20 20 F 1.35106 * 119.97425 * 180.02562 * 19 17 16 21 21 C 1.38166 * 120.05228 * 359.97438 * 19 17 16 22 22 N 1.30777 * 107.17173 * 359.61720 * 13 12 11 23 23 O 1.21294 * 110.09224 * 0.24555 * 22 13 12 24 24 H 0.97003 * 119.99603 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46538 * 60.00699 * 9 7 2 26 26 H 1.08995 * 109.47260 * 299.99888 * 9 7 2 27 27 H 1.08998 * 109.46731 * 60.00273 * 10 9 7 28 28 H 1.08995 * 109.47130 * 299.99961 * 10 9 7 29 29 H 1.07997 * 120.02678 * 0.29802 * 15 14 13 30 30 H 1.08006 * 119.93835 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.06570 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 7 1.1073 -5.6430 -1.0552 13 6 0.4707 -6.7349 -0.5742 14 6 -0.1531 -7.8158 -1.3771 15 6 -0.7730 -8.8896 -0.7408 16 6 -1.3517 -9.8934 -1.4900 17 6 -1.3181 -9.8356 -2.8735 18 9 -1.8865 -10.8205 -3.6029 19 6 -0.7023 -8.7687 -3.5121 20 9 -0.6723 -8.7161 -4.8618 21 6 -0.1206 -7.7597 -2.7689 22 7 0.5129 -6.6627 0.7309 23 8 1.0946 -5.6552 1.0739 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8717 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 -0.8042 -8.9338 0.3378 30 1 -1.8316 -10.7257 -0.9966 31 1 0.3585 -6.9290 -3.2657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236204024.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:16 Heat of formation + Delta-G solvation = -9.070115 kcal Electronic energy + Delta-G solvation = -20044.033002 eV Core-core repulsion = 16350.530257 eV Total energy + Delta-G solvation = -3693.502745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.74951 -48.81539 -45.29247 -39.29881 -35.72935 -34.58121 -32.75241 -31.36154 -30.94864 -29.86831 -25.96203 -24.85452 -23.69735 -22.91780 -21.92601 -20.65094 -18.42303 -17.86454 -17.66335 -17.23467 -16.86921 -16.58392 -16.39329 -15.22248 -15.17910 -14.76751 -14.59871 -14.38697 -14.14917 -13.57989 -13.16631 -12.98940 -12.79793 -12.50059 -12.14448 -11.72921 -11.68359 -11.37895 -11.04219 -10.90010 -10.77698 -10.26718 -10.20765 -9.58066 -9.39434 -9.33616 -8.79507 -8.49888 -6.14193 -4.19324 0.20503 0.63942 1.49070 2.36095 3.11323 3.21568 3.26103 3.30350 3.33204 3.35442 3.53533 3.90277 4.07004 4.34855 4.39505 4.63337 4.75105 4.93090 5.22713 5.35375 5.44795 5.52401 5.59924 5.80097 5.85043 6.01552 6.12821 6.20651 6.33721 6.52578 7.42122 7.48437 7.80745 8.15502 8.32570 8.85846 9.46118 10.96981 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.030047 B = 0.003156 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.653123 B = 8869.851688 C = 9410.301301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.030 4.030 11 C 0.225 3.775 12 N -0.488 5.488 13 C 0.197 3.803 14 C 0.012 3.988 15 C -0.068 4.068 16 C -0.126 4.126 17 C 0.079 3.921 18 F -0.126 7.126 19 C 0.068 3.932 20 F -0.124 7.124 21 C -0.084 4.084 22 N -0.382 5.382 23 O 0.078 5.922 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -18.309 -2.423 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.069 4.069 11 C 0.006 3.994 12 N -0.221 5.221 13 C -0.073 4.073 14 C 0.010 3.990 15 C -0.088 4.088 16 C -0.145 4.145 17 C 0.058 3.942 18 F -0.105 7.105 19 C 0.048 3.952 20 F -0.102 7.102 21 C -0.105 4.105 22 N -0.090 5.090 23 O 0.019 5.981 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.217 -18.899 -2.396 19.089 hybrid contribution 0.269 0.934 -0.381 1.044 sum -0.948 -17.965 -2.777 18.203 Atomic orbital electron populations 1.69963 1.06173 1.27057 1.49699 1.25011 0.94875 0.99485 0.94841 0.86500 0.79769 0.82969 0.78231 1.20523 1.21165 1.19672 1.21051 0.93175 0.90141 1.52175 0.91977 1.19176 0.93558 0.89795 0.98567 1.20843 0.98029 0.83376 1.04692 1.29636 0.93679 0.96850 0.79221 1.72042 1.16422 1.04710 1.28903 1.23577 1.00458 0.95379 0.87913 1.17105 0.98978 0.91978 0.90910 1.21131 0.94826 0.91438 1.01380 1.20973 1.01904 1.01015 0.90610 1.17830 0.99251 0.87089 0.90034 1.91542 1.82322 1.59341 1.77250 1.17422 1.03491 0.96325 0.77950 1.91561 1.94766 1.96287 1.27603 1.21156 0.98236 0.98259 0.92807 1.74801 1.15537 1.04159 1.14495 1.85277 1.51994 1.24634 1.36236 0.92691 0.95465 0.95710 0.88780 0.87946 0.83282 0.82872 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.53 -13.64 9.11 -34.44 -0.31 -13.96 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.64 4.96 -27.88 -0.14 0.50 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 3.97 7.75 -12.99 -0.10 3.87 16 12 N -0.49 -8.65 11.26 -9.88 -0.11 -8.77 16 13 C 0.20 3.17 7.80 -156.11 -1.22 1.95 16 14 C 0.01 0.16 5.88 -104.89 -0.62 -0.46 16 15 C -0.07 -0.70 9.69 -39.26 -0.38 -1.08 16 16 C -0.13 -1.11 10.01 -39.58 -0.40 -1.51 16 17 C 0.08 0.84 7.31 -39.29 -0.29 0.55 16 18 F -0.13 -1.39 17.18 2.25 0.04 -1.35 16 19 C 0.07 0.80 7.30 -39.42 -0.29 0.52 16 20 F -0.12 -1.56 17.18 2.25 0.04 -1.52 16 21 C -0.08 -1.04 9.68 -39.20 -0.38 -1.42 16 22 N -0.38 -6.32 11.85 30.97 0.37 -5.95 16 23 O 0.08 1.35 11.29 18.03 0.20 1.55 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.15 1.38 7.86 -52.49 -0.41 0.97 16 30 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.16 2.03 7.87 -52.49 -0.41 1.61 16 LS Contribution 296.02 15.07 4.46 4.46 Total: -1.00 -28.85 296.02 -6.14 -34.99 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -2.48 Total: -3.81 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -4.38 Total: -10.20 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.99 Total: -39.56 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.55 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.85 -6.14 -34.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236204024.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.922 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds