Wall clock time and date at job start Tue Mar 31 2020 01:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47314 * 2 1 4 4 C 1.50699 * 109.46689 * 119.99997 * 2 1 3 5 5 H 1.07999 * 119.99683 * 119.99730 * 4 2 1 6 6 C 1.37873 * 120.00339 * 299.99878 * 4 2 1 7 7 N 1.31517 * 119.99808 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46895 * 90.00220 * 8 6 4 10 10 H 1.48499 * 109.46898 * 210.00033 * 8 6 4 11 11 H 1.48493 * 109.47257 * 330.00195 * 8 6 4 12 12 N 1.46506 * 109.47116 * 239.99993 * 2 1 3 13 13 C 1.46503 * 119.99892 * 300.00147 * 12 2 1 14 14 C 1.38601 * 119.99726 * 120.00273 * 12 2 1 15 15 N 1.29692 * 124.94850 * 180.28059 * 14 12 2 16 16 C 1.32113 * 116.86723 * 180.22889 * 15 14 12 17 17 C 1.50703 * 122.70972 * 179.75203 * 16 15 14 18 18 F 1.39905 * 109.47157 * 184.73023 * 17 16 15 19 19 F 1.39900 * 109.47159 * 64.73324 * 17 16 15 20 20 F 1.39897 * 109.47274 * 304.73015 * 17 16 15 21 21 C 1.33321 * 114.58029 * 359.47907 * 16 15 14 22 22 S 1.70968 * 124.95359 * 359.97325 * 14 12 2 23 23 H 1.09010 * 109.46700 * 59.99981 * 1 2 3 24 24 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.08987 * 109.47204 * 300.00402 * 1 2 3 26 26 H 0.96998 * 120.00573 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47263 * 270.00382 * 13 12 2 28 28 H 1.08996 * 109.47172 * 30.00150 * 13 12 2 29 29 H 1.08996 * 109.46798 * 150.00134 * 13 12 2 30 30 H 1.08002 * 125.95862 * 180.24995 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3212 -1.1205 4.0080 9 1 3.6295 -0.5461 4.4124 10 1 1.3429 -0.9493 5.1119 11 1 2.4856 -2.5663 3.7120 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.8153 -0.0170 -2.1085 15 7 3.2945 -0.5313 -3.1984 16 6 4.0413 0.2559 -3.9520 17 6 4.6682 -0.2069 -5.2419 18 9 5.4827 0.8082 -5.7552 19 9 3.6630 -0.5104 -6.1664 20 9 5.4410 -1.3481 -5.0017 21 6 4.1908 1.4946 -3.4821 22 16 3.3037 1.6151 -1.9649 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8898 26 1 0.7081 1.1609 3.4843 27 1 2.4157 -2.7378 -0.9717 28 1 0.6905 -2.3002 -0.9847 29 1 1.6239 -2.2852 -2.5002 30 1 4.7574 2.2862 -3.9498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269265229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:16 Heat of formation + Delta-G solvation = -99.388634 kcal Electronic energy + Delta-G solvation = -19799.710898 eV Core-core repulsion = 16114.275294 eV Total energy + Delta-G solvation = -3685.435604 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.98781 -47.54646 -47.42405 -39.42452 -36.82364 -33.18780 -30.60229 -29.00929 -26.75993 -26.42344 -25.45501 -22.98676 -20.66648 -19.64267 -18.68558 -18.34698 -17.94486 -16.60502 -16.44706 -15.77403 -15.05193 -14.72913 -14.36863 -14.26086 -14.00978 -13.90889 -13.62647 -13.62106 -13.08646 -12.95130 -12.81630 -12.52239 -11.80199 -11.49321 -11.31336 -11.14690 -10.97907 -10.88136 -10.50405 -10.32187 -9.89585 -9.31793 -9.23397 -8.93241 -8.68514 -7.03215 -6.30496 -4.41856 1.18623 1.51665 1.96142 2.80699 2.94981 3.15493 3.22927 3.25509 3.49601 3.99708 4.22689 4.29922 4.59876 4.99785 5.30237 5.55962 5.77529 5.97900 6.11370 6.29379 6.46475 6.58910 6.68491 6.97030 7.26409 7.47479 7.67659 7.78048 8.02920 8.20909 8.64045 9.26755 10.73008 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.004749 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.574625 B = 5894.306656 C = 5984.305557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.268 3.732 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.066 0.934 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.546 5.546 13 C 0.107 3.893 14 C 0.341 3.659 15 N -0.559 5.559 16 C 0.033 3.967 17 C 0.547 3.453 18 F -0.175 7.175 19 F -0.173 7.173 20 F -0.171 7.171 21 C -0.288 4.288 22 S 0.147 5.853 23 H 0.016 0.984 24 H 0.039 0.961 25 H 0.100 0.900 26 H 0.267 0.733 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 0.864 -10.115 10.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.168 3.832 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.260 5.260 13 C -0.038 4.038 14 C -0.031 4.031 15 N -0.287 5.287 16 C -0.102 4.102 17 C 0.490 3.510 18 F -0.156 7.156 19 F -0.155 7.155 20 F -0.153 7.153 21 C -0.433 4.433 22 S 0.399 5.601 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.055 1.120 -9.155 9.716 hybrid contribution 0.811 -0.852 -0.105 1.181 sum 3.866 0.268 -9.259 10.037 Atomic orbital electron populations 1.22157 0.97034 1.00413 1.01378 1.19198 0.91921 0.92425 0.79663 0.93398 1.21275 1.32620 1.13693 0.89625 0.91622 1.24891 0.94528 0.94902 0.99134 1.69844 1.35679 1.22450 1.24389 0.86395 0.78712 0.80031 0.81785 1.20374 1.20914 1.19706 1.47078 1.47151 1.11476 1.20263 1.21508 1.00664 0.80832 1.00811 1.23585 0.94630 0.93866 0.90975 1.65943 1.20180 1.35785 1.06798 1.19315 1.02583 0.91573 0.96753 1.17382 0.75905 0.74674 0.83085 1.93162 1.73903 1.60371 1.88195 1.93202 1.60746 1.93171 1.68345 1.93206 1.76011 1.51647 1.94402 1.26285 1.12879 1.01157 1.02939 1.84325 1.46920 1.09630 1.19176 0.96452 0.94242 0.88154 0.92262 0.93182 0.90793 0.91782 0.80488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 2 C 0.27 6.08 2.67 -69.08 -0.18 5.90 16 3 H 0.05 1.15 6.34 -51.93 -0.33 0.82 16 4 C -0.53 -13.27 8.37 -34.44 -0.29 -13.55 16 5 H 0.07 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -22.78 11.32 55.43 0.63 -22.15 16 8 Si 0.90 19.77 29.54 -169.99 -5.02 14.74 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.55 -11.28 2.86 -177.59 -0.51 -11.79 16 13 C 0.11 1.95 9.80 59.85 0.59 2.54 16 14 C 0.34 6.78 7.74 -87.69 -0.68 6.10 16 15 N -0.56 -10.91 9.80 -11.36 -0.11 -11.02 16 16 C 0.03 0.58 6.17 -84.19 -0.52 0.06 16 17 C 0.55 8.43 3.56 36.01 0.13 8.56 16 18 F -0.17 -2.38 16.41 2.25 0.04 -2.34 16 19 F -0.17 -2.70 17.30 2.25 0.04 -2.66 16 20 F -0.17 -2.75 17.30 2.25 0.04 -2.71 16 21 C -0.29 -4.46 10.61 29.02 0.31 -4.15 16 22 S 0.15 2.56 21.38 -107.50 -2.30 0.26 16 23 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 24 H 0.04 0.81 6.66 -51.93 -0.35 0.46 16 25 H 0.10 2.37 6.07 -51.94 -0.32 2.06 16 26 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 29 H 0.06 1.11 7.61 -51.93 -0.40 0.71 16 30 H 0.18 2.19 7.69 -52.49 -0.40 1.79 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -25.73 283.43 -5.84 -31.57 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -2.50 Total: -2.32 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.41 Total: 4.15 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.01 Total: -44.97 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.11 Total: -7.71 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.30 Total: 0.26 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -25.73 -5.84 -31.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269265229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.823 kcal (2) G-P(sol) polarization free energy of solvation -25.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds