Wall clock time and date at job start Tue Mar 31 2020 01:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47314 * 2 1 4 4 C 1.50699 * 109.46689 * 119.99997 * 2 1 3 5 5 H 1.07999 * 119.99683 * 119.99730 * 4 2 1 6 6 C 1.37873 * 120.00339 * 299.99878 * 4 2 1 7 7 N 1.31517 * 119.99808 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46895 * 90.00220 * 8 6 4 10 10 H 1.48499 * 109.46898 * 210.00033 * 8 6 4 11 11 H 1.48493 * 109.47257 * 330.00195 * 8 6 4 12 12 N 1.46506 * 109.47116 * 239.99993 * 2 1 3 13 13 C 1.46503 * 119.99892 * 300.00147 * 12 2 1 14 14 C 1.38601 * 119.99726 * 120.00273 * 12 2 1 15 15 N 1.29692 * 124.94850 * 180.28059 * 14 12 2 16 16 C 1.32113 * 116.86723 * 180.22889 * 15 14 12 17 17 C 1.50703 * 122.70972 * 179.75203 * 16 15 14 18 18 F 1.39905 * 109.47157 * 184.73023 * 17 16 15 19 19 F 1.39900 * 109.47159 * 64.73324 * 17 16 15 20 20 F 1.39897 * 109.47274 * 304.73015 * 17 16 15 21 21 C 1.33321 * 114.58029 * 359.47907 * 16 15 14 22 22 S 1.70968 * 124.95359 * 359.97325 * 14 12 2 23 23 H 1.09010 * 109.46700 * 59.99981 * 1 2 3 24 24 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.08987 * 109.47204 * 300.00402 * 1 2 3 26 26 H 0.96998 * 120.00573 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47263 * 270.00382 * 13 12 2 28 28 H 1.08996 * 109.47172 * 30.00150 * 13 12 2 29 29 H 1.08996 * 109.46798 * 150.00134 * 13 12 2 30 30 H 1.08002 * 125.95862 * 180.24995 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3212 -1.1205 4.0080 9 1 3.6295 -0.5461 4.4124 10 1 1.3429 -0.9493 5.1119 11 1 2.4856 -2.5663 3.7120 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.8153 -0.0170 -2.1085 15 7 3.2945 -0.5313 -3.1984 16 6 4.0413 0.2559 -3.9520 17 6 4.6682 -0.2069 -5.2419 18 9 5.4827 0.8082 -5.7552 19 9 3.6630 -0.5104 -6.1664 20 9 5.4410 -1.3481 -5.0017 21 6 4.1908 1.4946 -3.4821 22 16 3.3037 1.6151 -1.9649 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8898 26 1 0.7081 1.1609 3.4843 27 1 2.4157 -2.7378 -0.9717 28 1 0.6905 -2.3002 -0.9847 29 1 1.6239 -2.2852 -2.5002 30 1 4.7574 2.2862 -3.9498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269265229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:16 Heat of formation + Delta-G solvation = -112.096736 kcal Electronic energy + Delta-G solvation = -19800.261963 eV Core-core repulsion = 16114.275294 eV Total energy + Delta-G solvation = -3685.986669 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.19253 -48.71829 -48.66055 -40.84996 -38.40549 -34.97418 -32.16688 -30.58208 -28.20432 -27.73208 -27.32345 -24.47142 -22.25096 -21.02888 -20.04306 -19.56653 -19.24419 -18.41614 -17.86087 -17.24293 -16.77298 -16.19088 -15.72087 -15.51006 -15.44841 -15.10581 -14.84805 -14.83376 -14.71755 -14.41923 -14.23530 -13.89582 -13.53872 -13.06649 -12.99831 -12.82049 -12.56606 -12.46687 -12.22453 -12.09250 -11.47211 -10.94937 -10.72268 -10.56865 -10.34994 -8.56826 -8.16061 -6.36338 -0.17879 0.12151 0.60521 1.41965 1.44465 1.49981 1.53906 1.54887 2.06062 2.41143 2.68276 3.07738 3.08742 3.36630 3.97148 4.26389 4.34554 4.61134 4.63606 4.72574 4.87474 4.92211 4.98002 5.26359 5.57909 5.67868 5.93045 6.04921 6.36825 6.63171 6.83148 7.35257 8.82921 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.004749 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.574625 B = 5894.306656 C = 5984.305557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.034 0.966 4 C -0.545 4.545 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.907 5.907 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.272 1.272 12 N -0.561 5.561 13 C 0.112 3.888 14 C 0.316 3.684 15 N -0.571 5.571 16 C 0.006 3.994 17 C 0.556 3.444 18 F -0.161 7.161 19 F -0.174 7.174 20 F -0.176 7.176 21 C -0.256 4.256 22 S 0.154 5.846 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.269 0.731 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 1.210 -10.780 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.172 3.828 3 H 0.051 0.949 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.545 5.545 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.196 1.196 12 N -0.276 5.276 13 C -0.033 4.033 14 C -0.055 4.055 15 N -0.299 5.299 16 C -0.128 4.128 17 C 0.499 3.501 18 F -0.142 7.142 19 F -0.156 7.156 20 F -0.157 7.157 21 C -0.400 4.400 22 S 0.406 5.594 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.805 1.466 -9.859 10.669 hybrid contribution 0.654 -0.883 0.007 1.099 sum 4.460 0.583 -9.852 10.830 Atomic orbital electron populations 1.21988 0.96477 1.00570 1.00872 1.18931 0.92275 0.91616 0.79936 0.94886 1.21470 1.32518 1.13502 0.90869 0.92657 1.25513 0.94739 0.95497 1.01345 1.69933 1.36379 1.23315 1.24882 0.85566 0.78107 0.79005 0.79047 1.20415 1.20473 1.19623 1.46884 1.48348 1.12114 1.20248 1.21503 1.00660 0.79905 1.01204 1.23758 0.95422 0.94977 0.91371 1.65904 1.20258 1.36849 1.06869 1.19610 1.03389 0.92172 0.97642 1.17118 0.75836 0.74752 0.82433 1.93191 1.73420 1.59681 1.87907 1.93202 1.60916 1.93209 1.68249 1.93200 1.76079 1.52016 1.94434 1.26691 1.10791 1.01319 1.01243 1.84331 1.46724 1.08276 1.20106 0.95182 0.93725 0.90255 0.92187 0.93786 0.90291 0.91060 0.76898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.05 8.95 71.98 0.64 -5.40 16 2 C 0.27 12.43 2.67 44.25 0.12 12.55 16 3 H 0.03 1.61 6.34 -2.39 -0.02 1.59 16 4 C -0.54 -27.17 8.37 25.60 0.21 -26.95 16 5 H 0.06 2.81 7.65 -2.91 -0.02 2.79 16 6 C 0.03 1.52 5.30 84.65 0.45 1.97 16 7 N -0.91 -46.69 11.32 21.45 0.24 -46.45 16 8 Si 0.96 40.30 29.54 68.60 2.03 42.33 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.56 -23.04 2.86 -715.78 -2.05 -25.09 16 13 C 0.11 4.06 9.80 127.77 1.25 5.31 16 14 C 0.32 12.32 7.74 179.32 1.39 13.71 16 15 N -0.57 -21.62 9.80 -189.87 -1.86 -23.48 16 16 C 0.01 0.19 6.17 41.41 0.26 0.45 16 17 C 0.56 15.92 3.56 71.24 0.25 16.18 16 18 F -0.16 -3.88 16.41 44.97 0.74 -3.15 16 19 F -0.17 -5.11 17.30 44.97 0.78 -4.33 16 20 F -0.18 -5.35 17.30 44.97 0.78 -4.58 16 21 C -0.26 -7.22 10.61 66.71 0.71 -6.51 16 22 S 0.15 5.13 21.38 -56.49 -1.21 3.92 16 23 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.04 1.82 6.66 -2.39 -0.02 1.80 16 25 H 0.08 3.77 6.07 -2.39 -0.01 3.76 16 26 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 2.71 6.43 -2.39 -0.02 2.70 16 29 H 0.07 2.43 7.61 -2.39 -0.02 2.41 16 30 H 0.21 4.34 7.69 -2.91 -0.02 4.32 16 Total: -1.00 -53.26 283.43 5.92 -47.34 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 1.19 Total: 2.18 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.28 Total: 11.30 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -3.66 Total: -95.01 kcal Atomic # 9 Polarization: -14.35 SS G_CDS: 2.29 Total: -12.05 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.21 Total: 3.92 kcal Total: -53.26 5.92 -47.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269265229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.758 kcal (2) G-P(sol) polarization free energy of solvation -53.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds