Wall clock time and date at job start Tue Mar 31 2020 01:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47201 * 2 1 4 4 C 1.50700 * 109.46929 * 239.99556 * 2 1 3 5 5 H 1.08000 * 120.00451 * 239.99899 * 4 2 1 6 6 C 1.37877 * 119.99408 * 60.00585 * 4 2 1 7 7 N 1.31512 * 120.00528 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99432 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47424 * 59.99883 * 8 6 4 10 10 H 1.48505 * 109.47069 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47187 * 299.99623 * 8 6 4 12 12 N 1.46500 * 109.47006 * 119.99986 * 2 1 3 13 13 C 1.46497 * 120.00208 * 60.00016 * 12 2 1 14 14 C 1.38611 * 119.99873 * 239.99731 * 12 2 1 15 15 N 1.29694 * 124.94912 * 179.97438 * 14 12 2 16 16 C 1.32115 * 116.86520 * 179.73887 * 15 14 12 17 17 C 1.50698 * 122.70695 * 180.02562 * 16 15 14 18 18 F 1.39904 * 109.47229 * 89.99784 * 17 16 15 19 19 F 1.39905 * 109.47243 * 209.99584 * 17 16 15 20 20 F 1.39898 * 109.47541 * 329.99515 * 17 16 15 21 21 C 1.33320 * 114.58266 * 359.97438 * 16 15 14 22 22 S 1.70961 * 124.95138 * 359.70151 * 14 12 2 23 23 H 1.09001 * 109.47027 * 299.99946 * 1 2 3 24 24 H 1.09000 * 109.47471 * 59.99819 * 1 2 3 25 25 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 26 26 H 0.96999 * 120.00025 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47148 * 269.99907 * 13 12 2 28 28 H 1.08997 * 109.47237 * 29.99920 * 13 12 2 29 29 H 1.09001 * 109.47689 * 150.00032 * 13 12 2 30 30 H 1.07998 * 125.95352 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1192 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.8152 -0.0170 2.1086 15 7 3.2983 -0.5327 3.1961 16 6 4.0449 0.2547 3.9498 17 6 4.6720 -0.2082 5.2395 18 9 5.9403 -0.7377 4.9778 19 9 4.7910 0.8759 6.1157 20 9 3.8670 -1.1927 5.8226 21 6 4.1997 1.4914 3.4766 22 16 3.3101 1.6128 1.9610 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1608 -3.4844 27 1 0.7375 -2.1443 1.9994 28 1 1.5295 -2.5969 0.4709 29 1 2.4628 -2.5819 1.9864 30 1 4.7705 2.2815 3.9418 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269265232.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:18 Heat of formation + Delta-G solvation = -99.444996 kcal Electronic energy + Delta-G solvation = -19800.127234 eV Core-core repulsion = 16114.689186 eV Total energy + Delta-G solvation = -3685.438048 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.97589 -47.53066 -47.41433 -39.42263 -36.81484 -33.18983 -30.59641 -29.02365 -26.73523 -26.39780 -25.46381 -22.98345 -20.67807 -19.65470 -18.67232 -18.35912 -17.88848 -16.62207 -16.43573 -15.77708 -15.05838 -14.73004 -14.33758 -14.23047 -14.00784 -13.90244 -13.61344 -13.60395 -13.10759 -12.97597 -12.72863 -12.50138 -11.85386 -11.48605 -11.26500 -11.12542 -11.01440 -10.89671 -10.50409 -10.34084 -9.90068 -9.32756 -9.23339 -8.93339 -8.68528 -7.03124 -6.30837 -4.42383 1.18543 1.51703 1.96223 2.81106 2.94910 3.16635 3.22006 3.24079 3.50098 3.99873 4.22367 4.32041 4.59287 4.99519 5.29807 5.55284 5.80630 6.01450 6.07752 6.31851 6.45812 6.60067 6.69738 7.01020 7.25752 7.46707 7.66833 7.78885 8.02402 8.21207 8.63005 9.26057 10.72690 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.004750 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.910385 B = 5893.310854 C = 5982.140936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.268 3.732 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.066 0.934 6 C 0.070 3.930 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.546 5.546 13 C 0.104 3.896 14 C 0.340 3.660 15 N -0.558 5.558 16 C 0.033 3.967 17 C 0.546 3.454 18 F -0.175 7.175 19 F -0.175 7.175 20 F -0.168 7.168 21 C -0.287 4.287 22 S 0.148 5.852 23 H 0.016 0.984 24 H 0.099 0.901 25 H 0.038 0.962 26 H 0.268 0.732 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 0.780 9.950 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.168 3.832 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.084 0.916 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.259 5.259 13 C -0.041 4.041 14 C -0.031 4.031 15 N -0.286 5.286 16 C -0.103 4.103 17 C 0.488 3.512 18 F -0.156 7.156 19 F -0.157 7.157 20 F -0.150 7.150 21 C -0.432 4.432 22 S 0.400 5.600 23 H 0.035 0.965 24 H 0.118 0.882 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.210 1.041 8.983 9.596 hybrid contribution 0.778 -0.838 0.149 1.154 sum 3.989 0.203 9.132 9.967 Atomic orbital electron populations 1.22140 0.97002 1.00443 1.01283 1.19187 0.91934 0.92421 0.79611 0.93427 1.21238 1.32757 1.13764 0.89650 0.91623 1.24887 0.94512 0.94878 0.99118 1.69835 1.35588 1.22355 1.24505 0.86454 0.79362 0.79692 0.81408 1.19989 1.20970 1.20008 1.47083 1.47275 1.11428 1.20147 1.21555 0.99601 0.81040 1.01949 1.23596 0.94566 0.93878 0.91084 1.65969 1.20153 1.35641 1.06853 1.19305 1.02484 0.91614 0.96870 1.17397 0.76018 0.74715 0.83029 1.93210 1.41576 1.86782 1.94056 1.93177 1.95993 1.55330 1.71166 1.93201 1.73167 1.62998 1.85602 1.26247 1.12887 1.01219 1.02824 1.84319 1.46510 1.09880 1.19259 0.96535 0.88211 0.94303 0.92190 0.93767 0.90016 0.91660 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.97 37.16 0.33 -2.92 16 2 C 0.27 6.09 2.67 -69.08 -0.18 5.91 16 3 H 0.05 1.15 6.34 -51.93 -0.33 0.82 16 4 C -0.54 -13.24 7.99 -34.44 -0.28 -13.51 16 5 H 0.07 1.64 7.33 -52.49 -0.38 1.25 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -22.72 11.32 55.43 0.63 -22.10 16 8 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 12 N -0.55 -11.28 2.86 -177.60 -0.51 -11.78 16 13 C 0.10 1.89 9.55 59.85 0.57 2.46 16 14 C 0.34 6.78 7.74 -87.67 -0.68 6.10 16 15 N -0.56 -10.91 9.61 -11.37 -0.11 -11.02 16 16 C 0.03 0.57 6.20 -84.19 -0.52 0.05 16 17 C 0.55 8.42 3.49 36.00 0.13 8.55 16 18 F -0.17 -2.68 17.30 2.25 0.04 -2.64 16 19 F -0.18 -2.42 16.82 2.25 0.04 -2.38 16 20 F -0.17 -2.73 17.15 2.25 0.04 -2.69 16 21 C -0.29 -4.45 10.67 29.01 0.31 -4.14 16 22 S 0.15 2.58 21.38 -107.50 -2.30 0.28 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 25 H 0.04 0.80 7.67 -51.93 -0.40 0.40 16 26 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 29 H 0.06 1.16 7.62 -51.93 -0.40 0.76 16 30 H 0.18 2.17 7.99 -52.49 -0.42 1.75 16 LS Contribution 284.51 15.07 4.29 4.29 Total: -1.00 -25.61 284.51 -5.91 -31.52 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -2.59 Total: -2.25 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.41 Total: 4.13 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.01 Total: -44.90 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.12 Total: -7.71 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.30 Total: 0.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -25.61 -5.91 -31.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269265232.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.930 kcal (2) G-P(sol) polarization free energy of solvation -25.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds