Wall clock time and date at job start Tue Mar 31 2020 02:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31680 * 119.71852 * 2 1 4 4 C 1.32042 * 121.86582 * 180.02562 * 3 2 1 5 5 Cl 1.73604 * 119.46868 * 180.02562 * 4 3 2 6 6 C 1.38571 * 121.06843 * 359.97438 * 4 3 2 7 7 C 1.38243 * 119.29740 * 0.02562 * 6 4 3 8 8 C 1.39591 * 119.71325 * 180.02562 * 2 1 3 9 9 C 1.47675 * 120.54858 * 0.25228 * 8 2 1 10 10 O 1.21593 * 120.00291 * 314.36577 * 9 8 2 11 11 N 1.34779 * 119.99785 * 134.36833 * 9 8 2 12 12 C 1.36882 * 119.99872 * 184.05861 * 11 9 8 13 13 H 1.08000 * 120.00108 * 134.13035 * 12 11 9 14 14 C 1.39045 * 120.00093 * 314.12593 * 12 11 9 15 15 N 1.31370 * 119.99833 * 338.84731 * 14 12 11 16 16 Si 1.86796 * 119.99949 * 158.84283 * 14 12 11 17 17 H 1.48503 * 109.46880 * 60.00188 * 16 14 12 18 18 H 1.48502 * 109.47288 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47381 * 300.00243 * 16 14 12 20 20 C 1.46500 * 120.00244 * 4.06222 * 11 9 8 21 21 C 1.52999 * 117.50138 * 182.93730 * 20 11 9 22 22 C 1.52997 * 117.50107 * 114.31417 * 20 11 9 23 23 H 1.09003 * 109.46920 * 270.11976 * 1 2 3 24 24 H 1.08998 * 109.46712 * 30.11677 * 1 2 3 25 25 H 1.08991 * 109.47081 * 150.11503 * 1 2 3 26 26 H 1.07992 * 120.35635 * 180.02562 * 6 4 3 27 27 H 1.07998 * 120.85156 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99640 * 185.04636 * 15 14 12 29 29 H 1.09004 * 115.54622 * 328.64633 * 20 11 9 30 30 H 1.08998 * 117.49426 * 359.97438 * 21 20 11 31 31 H 1.09001 * 117.50018 * 145.01753 * 21 20 11 32 32 H 1.08995 * 117.49977 * 214.98185 * 22 20 11 33 33 H 1.09008 * 117.50012 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4793 1.1931 -0.0005 5 17 4.2761 2.7355 0.0002 6 6 4.2384 0.0338 -0.0005 7 6 3.6003 -1.1926 -0.0005 8 6 2.1989 -1.2124 -0.0005 9 6 1.4664 -2.4946 -0.0067 10 8 0.5226 -2.6593 0.7420 11 7 1.8441 -3.4824 -0.8423 12 6 1.1154 -4.6393 -0.9079 13 1 0.8599 -5.0629 -1.8679 14 6 0.7044 -5.2693 0.2615 15 7 1.3286 -5.0279 1.3920 16 14 -0.7354 -6.4588 0.2251 17 1 -0.4272 -7.5809 -0.6976 18 1 -0.9723 -6.9913 1.5910 19 1 -1.9517 -5.7496 -0.2469 20 6 3.0344 -3.3180 -1.6803 21 6 3.3719 -4.4459 -2.6574 22 6 4.2252 -4.2382 -1.4046 23 1 -0.3633 0.0021 1.0277 24 1 -0.3633 0.8889 -0.5156 25 1 -0.3633 -0.8909 -0.5120 26 1 5.3170 0.0876 -0.0005 27 1 4.1672 -2.1118 -0.0010 28 1 1.0902 -5.5211 2.1925 29 1 3.2498 -2.2971 -1.9958 30 1 2.7085 -5.3105 -2.6764 31 1 3.8093 -4.1673 -3.6161 32 1 5.2239 -3.8230 -1.5390 33 1 4.1231 -4.9658 -0.5993 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269731863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:15 Heat of formation + Delta-G solvation = 34.576813 kcal Electronic energy + Delta-G solvation = -19895.772887 eV Core-core repulsion = 16755.959494 eV Total energy + Delta-G solvation = -3139.813392 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28949 -38.35316 -36.56266 -36.12676 -33.05684 -32.84878 -31.81443 -30.86274 -27.57251 -25.32247 -23.75512 -22.18005 -21.70714 -21.23431 -19.71996 -17.18629 -16.78428 -16.29529 -16.05754 -15.22616 -14.58039 -14.40787 -13.98019 -13.69383 -13.25164 -13.05028 -12.94170 -12.55109 -12.28889 -11.88466 -11.76057 -11.23446 -11.20192 -11.15907 -11.04488 -10.90086 -10.54158 -10.41064 -10.03847 -9.91606 -9.49167 -9.47992 -8.82487 -8.55711 -8.25242 -7.18554 -6.29350 -4.02860 1.01908 1.39693 1.92089 3.22596 3.30820 3.34231 3.62621 4.12535 4.16925 4.55462 4.63316 4.67864 5.03184 5.06766 5.18945 5.24532 5.49927 5.58007 5.65285 5.76205 5.81455 6.00826 6.10434 6.17606 6.19802 6.35141 6.41881 6.50024 6.72834 6.81970 6.89832 7.48137 7.94401 8.12344 8.85032 8.95110 9.44328 10.05898 10.78479 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.005788 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.741445 B = 4836.450587 C = 5549.008671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.179 3.821 3 N -0.485 5.485 4 C 0.174 3.826 5 Cl -0.047 7.047 6 C -0.168 4.168 7 C -0.043 4.043 8 C -0.138 4.138 9 C 0.516 3.484 10 O -0.521 6.521 11 N -0.408 5.408 12 C -0.352 4.352 13 H 0.084 0.916 14 C 0.078 3.922 15 N -0.823 5.823 16 Si 0.915 3.085 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.061 3.939 21 C -0.176 4.176 22 C -0.198 4.198 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.142 0.858 27 H 0.153 0.847 28 H 0.268 0.732 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.345 6.994 -4.609 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.040 3.960 3 N -0.197 5.197 4 C 0.009 3.991 5 Cl -0.019 7.019 6 C -0.189 4.189 7 C -0.070 4.070 8 C -0.144 4.144 9 C 0.303 3.697 10 O -0.399 6.399 11 N -0.128 5.128 12 C -0.478 4.478 13 H 0.102 0.898 14 C -0.134 4.134 15 N -0.455 5.455 16 Si 0.741 3.259 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.045 4.045 21 C -0.214 4.214 22 C -0.236 4.236 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.160 0.840 27 H 0.170 0.830 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.396 7.807 -3.989 10.294 hybrid contribution 0.275 -1.165 0.145 1.206 sum 5.671 6.642 -3.843 9.542 Atomic orbital electron populations 1.20745 0.87483 1.03292 1.03893 1.21215 0.97085 0.85548 0.92126 1.66744 1.08078 1.30160 1.14694 1.21578 0.90022 0.86777 1.00718 1.98371 1.77263 1.29590 1.96654 1.21674 1.01264 0.91070 1.04892 1.22030 0.93812 0.98123 0.93010 1.21545 0.94452 0.97040 1.01392 1.17458 0.85241 0.81696 0.85268 1.90657 1.29542 1.80311 1.39413 1.42652 1.20512 1.13473 1.36130 1.18911 1.33334 1.02395 0.93188 0.89849 1.25322 0.96881 0.96145 0.95078 1.69802 1.37370 1.37629 1.00667 0.86238 0.82772 0.79619 0.77235 1.20247 1.21104 1.19643 1.21917 0.89410 0.94335 0.98843 1.23104 1.03485 1.01890 0.92892 1.23303 0.94482 1.05166 1.00690 0.89724 0.91222 0.89336 0.83974 0.82994 0.92149 0.87818 0.87476 0.89788 0.89919 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.16 36.01 0.33 -1.39 16 2 C 0.18 3.42 6.82 -82.15 -0.56 2.86 16 3 N -0.48 -8.76 10.24 -6.26 -0.06 -8.82 16 4 C 0.17 2.79 7.27 -17.34 -0.13 2.66 16 5 Cl -0.05 -0.63 29.10 -51.86 -1.51 -2.14 16 6 C -0.17 -2.49 9.86 -39.46 -0.39 -2.88 16 7 C -0.04 -0.75 7.75 -38.86 -0.30 -1.05 16 8 C -0.14 -2.81 5.13 -104.82 -0.54 -3.34 16 9 C 0.52 12.53 5.86 -12.41 -0.07 12.46 16 10 O -0.52 -14.47 13.24 5.28 0.07 -14.40 16 11 N -0.41 -9.64 2.81 -108.85 -0.31 -9.94 16 12 C -0.35 -8.99 7.99 -15.00 -0.12 -9.11 16 13 H 0.08 2.06 7.10 -52.49 -0.37 1.68 16 14 C 0.08 2.07 4.28 -17.45 -0.07 2.00 16 15 N -0.82 -23.04 11.98 55.50 0.67 -22.37 16 16 Si 0.91 20.83 29.61 -169.99 -5.03 15.80 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.06 1.15 4.46 -67.93 -0.30 0.84 16 21 C -0.18 -2.96 9.81 -26.73 -0.26 -3.22 16 22 C -0.20 -3.37 9.50 -26.73 -0.25 -3.62 16 23 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.09 1.71 6.61 -51.93 -0.34 1.37 16 26 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.15 2.52 5.99 -52.49 -0.31 2.21 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.10 1.78 6.29 -51.93 -0.33 1.46 16 30 H 0.11 1.98 6.61 -51.93 -0.34 1.64 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.10 2.05 8.14 -51.92 -0.42 1.62 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -29.79 295.86 -7.76 -37.55 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.37 Total: 3.67 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.67 Total: -3.80 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.30 Total: -41.14 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.51 Total: -2.14 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.79 -7.76 -37.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269731863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.129 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds