Wall clock time and date at job start Tue Mar 31 2020 02:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31680 * 119.71852 * 2 1 4 4 C 1.32042 * 121.86582 * 180.02562 * 3 2 1 5 5 Cl 1.73604 * 119.46868 * 180.02562 * 4 3 2 6 6 C 1.38571 * 121.06843 * 359.97438 * 4 3 2 7 7 C 1.38243 * 119.29740 * 0.02562 * 6 4 3 8 8 C 1.39591 * 119.71325 * 180.02562 * 2 1 3 9 9 C 1.47675 * 120.54858 * 0.25228 * 8 2 1 10 10 O 1.21593 * 120.00291 * 314.36577 * 9 8 2 11 11 N 1.34779 * 119.99785 * 134.36833 * 9 8 2 12 12 C 1.36882 * 119.99872 * 184.05861 * 11 9 8 13 13 H 1.08000 * 120.00108 * 134.13035 * 12 11 9 14 14 C 1.39045 * 120.00093 * 314.12593 * 12 11 9 15 15 N 1.31370 * 119.99833 * 338.84731 * 14 12 11 16 16 Si 1.86796 * 119.99949 * 158.84283 * 14 12 11 17 17 H 1.48503 * 109.46880 * 60.00188 * 16 14 12 18 18 H 1.48502 * 109.47288 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47381 * 300.00243 * 16 14 12 20 20 C 1.46500 * 120.00244 * 4.06222 * 11 9 8 21 21 C 1.52999 * 117.50138 * 182.93730 * 20 11 9 22 22 C 1.52997 * 117.50107 * 114.31417 * 20 11 9 23 23 H 1.09003 * 109.46920 * 270.11976 * 1 2 3 24 24 H 1.08998 * 109.46712 * 30.11677 * 1 2 3 25 25 H 1.08991 * 109.47081 * 150.11503 * 1 2 3 26 26 H 1.07992 * 120.35635 * 180.02562 * 6 4 3 27 27 H 1.07998 * 120.85156 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99640 * 185.04636 * 15 14 12 29 29 H 1.09004 * 115.54622 * 328.64633 * 20 11 9 30 30 H 1.08998 * 117.49426 * 359.97438 * 21 20 11 31 31 H 1.09001 * 117.50018 * 145.01753 * 21 20 11 32 32 H 1.08995 * 117.49977 * 214.98185 * 22 20 11 33 33 H 1.09008 * 117.50012 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4793 1.1931 -0.0005 5 17 4.2761 2.7355 0.0002 6 6 4.2384 0.0338 -0.0005 7 6 3.6003 -1.1926 -0.0005 8 6 2.1989 -1.2124 -0.0005 9 6 1.4664 -2.4946 -0.0067 10 8 0.5226 -2.6593 0.7420 11 7 1.8441 -3.4824 -0.8423 12 6 1.1154 -4.6393 -0.9079 13 1 0.8599 -5.0629 -1.8679 14 6 0.7044 -5.2693 0.2615 15 7 1.3286 -5.0279 1.3920 16 14 -0.7354 -6.4588 0.2251 17 1 -0.4272 -7.5809 -0.6976 18 1 -0.9723 -6.9913 1.5910 19 1 -1.9517 -5.7496 -0.2469 20 6 3.0344 -3.3180 -1.6803 21 6 3.3719 -4.4459 -2.6574 22 6 4.2252 -4.2382 -1.4046 23 1 -0.3633 0.0021 1.0277 24 1 -0.3633 0.8889 -0.5156 25 1 -0.3633 -0.8909 -0.5120 26 1 5.3170 0.0876 -0.0005 27 1 4.1672 -2.1118 -0.0010 28 1 1.0902 -5.5211 2.1925 29 1 3.2498 -2.2971 -1.9958 30 1 2.7085 -5.3105 -2.6764 31 1 3.8093 -4.1673 -3.6161 32 1 5.2239 -3.8230 -1.5390 33 1 4.1231 -4.9658 -0.5993 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269731863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:14 Heat of formation + Delta-G solvation = 16.731983 kcal Electronic energy + Delta-G solvation = -19896.546697 eV Core-core repulsion = 16755.959494 eV Total energy + Delta-G solvation = -3140.587202 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74588 -39.96819 -37.90675 -37.61861 -34.87518 -34.22645 -33.36201 -32.60263 -29.01936 -27.11623 -25.25082 -23.61845 -23.12384 -22.72850 -21.40015 -18.87435 -18.12150 -17.93522 -17.48083 -17.00978 -16.22975 -15.79036 -15.52937 -15.29693 -14.86605 -14.52146 -14.40863 -13.92241 -13.87789 -13.52421 -13.20835 -12.88534 -12.78611 -12.73498 -12.44586 -12.34635 -12.19296 -12.05499 -11.60310 -11.32889 -10.94240 -10.85230 -10.67609 -10.18905 -9.82948 -9.01584 -8.26514 -6.02413 -0.36633 0.05184 0.68008 1.37895 1.47054 1.50000 2.08392 2.32685 2.61131 2.92476 3.08157 3.25060 3.31841 3.67792 3.77944 3.92126 4.09418 4.14945 4.26124 4.38222 4.44323 4.61873 4.67047 4.81654 4.91145 5.01527 5.05160 5.10097 5.29130 5.41614 5.45971 5.53402 6.17842 6.57543 6.95814 7.10326 7.58283 8.22403 8.81497 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.005788 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.741445 B = 4836.450587 C = 5549.008671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.170 3.830 3 N -0.495 5.495 4 C 0.172 3.828 5 Cl -0.017 7.017 6 C -0.149 4.149 7 C -0.036 4.036 8 C -0.165 4.165 9 C 0.510 3.490 10 O -0.572 6.572 11 N -0.423 5.423 12 C -0.361 4.361 13 H 0.086 0.914 14 C 0.033 3.967 15 N -0.862 5.862 16 Si 0.967 3.033 17 H -0.256 1.256 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.039 3.961 21 C -0.164 4.164 22 C -0.183 4.183 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.186 0.814 27 H 0.159 0.841 28 H 0.262 0.738 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.643 8.371 -6.056 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.032 3.968 3 N -0.207 5.207 4 C 0.007 3.993 5 Cl 0.011 6.989 6 C -0.169 4.169 7 C -0.063 4.063 8 C -0.171 4.171 9 C 0.298 3.702 10 O -0.453 6.453 11 N -0.142 5.142 12 C -0.488 4.488 13 H 0.103 0.897 14 C -0.175 4.175 15 N -0.496 5.496 16 Si 0.792 3.208 17 H -0.180 1.180 18 H -0.215 1.215 19 H -0.206 1.206 20 C -0.066 4.066 21 C -0.201 4.201 22 C -0.221 4.221 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.203 0.797 27 H 0.176 0.824 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.724 9.173 -5.480 13.185 hybrid contribution -0.316 -1.407 0.530 1.536 sum 7.408 7.767 -4.951 11.820 Atomic orbital electron populations 1.20640 0.87472 1.03200 1.03442 1.21230 0.97442 0.85662 0.92498 1.66801 1.09297 1.29373 1.15233 1.22028 0.89667 0.88567 0.99025 1.98389 1.76393 1.27707 1.96370 1.22026 1.03158 0.89331 1.02386 1.22101 0.92380 0.99537 0.92243 1.21260 0.95849 0.95324 1.04632 1.18038 0.84890 0.82962 0.84266 1.90603 1.31766 1.81616 1.41363 1.42832 1.22011 1.12849 1.36485 1.19125 1.33743 1.02865 0.93091 0.89690 1.26052 0.98674 0.97885 0.94923 1.69906 1.39169 1.39433 1.01110 0.85415 0.79667 0.78433 0.77249 1.17997 1.21477 1.20575 1.22140 0.88637 0.96139 0.99652 1.23176 1.02591 0.99919 0.94423 1.23260 0.95862 1.03384 0.99608 0.90425 0.88803 0.91729 0.79667 0.82399 0.92863 0.85755 0.89743 0.85814 0.85638 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.16 71.24 0.65 -2.63 16 2 C 0.17 6.44 6.82 42.91 0.29 6.73 16 3 N -0.49 -16.97 10.24 -173.71 -1.78 -18.74 16 4 C 0.17 4.97 7.27 84.74 0.62 5.59 16 5 Cl -0.02 -0.40 29.10 -2.72 -0.08 -0.48 16 6 C -0.15 -3.83 9.86 22.35 0.22 -3.61 16 7 C -0.04 -1.17 7.75 22.74 0.18 -0.99 16 8 C -0.16 -6.66 5.13 -19.99 -0.10 -6.76 16 9 C 0.51 25.52 5.86 86.74 0.51 26.03 16 10 O -0.57 -33.39 13.24 -4.01 -0.05 -33.44 16 11 N -0.42 -20.34 2.81 -616.55 -1.73 -22.08 16 12 C -0.36 -18.99 7.99 84.10 0.67 -18.32 16 13 H 0.09 4.30 7.10 -2.91 -0.02 4.28 16 14 C 0.03 1.79 4.28 84.96 0.36 2.15 16 15 N -0.86 -50.40 11.98 21.68 0.26 -50.14 16 16 Si 0.97 44.09 29.61 68.60 2.03 46.12 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 C 0.04 1.42 4.46 44.99 0.20 1.62 16 21 C -0.16 -5.16 9.81 30.59 0.30 -4.86 16 22 C -0.18 -5.86 9.50 30.59 0.29 -5.57 16 23 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 24 H 0.09 2.83 8.14 -2.39 -0.02 2.82 16 25 H 0.06 2.63 6.61 -2.39 -0.02 2.62 16 26 H 0.19 3.17 8.06 -2.91 -0.02 3.14 16 27 H 0.16 4.87 5.99 -2.91 -0.02 4.86 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.13 3.97 6.29 -2.39 -0.01 3.96 16 30 H 0.08 3.07 6.61 -2.39 -0.02 3.06 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -67.94 295.86 3.98 -63.95 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.14 Total: 15.44 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 4.19 Total: -0.62 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -3.25 Total: -90.96 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.05 Total: -33.44 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -67.94 3.98 -63.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269731863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.685 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds