Wall clock time and date at job start Tue Mar 31 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39612 * 119.95880 * 260.27929 * 3 2 1 5 5 C 1.38011 * 120.03445 * 179.76607 * 4 3 2 6 6 F 1.35102 * 120.01680 * 180.25027 * 5 4 3 7 7 C 1.39927 * 119.95930 * 0.51276 * 5 4 3 8 8 C 1.47625 * 120.03276 * 179.72432 * 7 5 4 9 9 O 1.21579 * 119.99827 * 270.01050 * 8 7 5 10 10 N 1.34776 * 120.00146 * 90.01910 * 8 7 5 11 11 C 1.46505 * 119.99974 * 179.97438 * 10 8 7 12 12 C 1.52990 * 109.47084 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.47069 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99858 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99798 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00265 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47020 * 89.99941 * 17 15 13 19 19 H 1.48497 * 109.47523 * 209.99914 * 17 15 13 20 20 H 1.48501 * 109.47067 * 330.00599 * 17 15 13 21 21 C 1.39925 * 119.92966 * 359.73703 * 7 5 4 22 22 F 1.35095 * 120.02093 * 179.97438 * 21 7 5 23 23 C 1.38002 * 119.95925 * 0.02562 * 21 7 5 24 24 H 1.08002 * 119.98852 * 0.02562 * 4 3 2 25 25 H 0.96995 * 119.99952 * 359.97438 * 10 8 7 26 26 H 1.08998 * 109.47230 * 300.00395 * 11 10 8 27 27 H 1.09005 * 109.46744 * 59.99771 * 11 10 8 28 28 H 1.08998 * 109.47521 * 300.00353 * 12 11 10 29 29 H 1.09005 * 109.47406 * 60.00312 * 12 11 10 30 30 H 0.97005 * 120.00001 * 180.02562 * 16 15 13 31 31 H 1.08005 * 119.98329 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2651 0.2052 1.1922 5 6 4.6452 0.2013 1.1948 6 9 5.3194 0.3942 2.3496 7 6 5.3457 0.0029 -0.0001 8 6 6.8219 0.0045 -0.0002 9 8 7.4286 1.0438 -0.1731 10 7 7.4971 -1.1461 0.1913 11 6 8.9621 -1.1446 0.1907 12 6 9.4737 -2.5667 0.4281 13 6 10.9808 -2.5650 0.4281 14 1 11.5197 -1.6418 0.2745 15 6 11.6715 -3.7419 0.6251 16 7 11.0152 -4.8661 0.8126 17 14 13.5395 -3.7397 0.6258 18 1 14.0337 -3.5084 2.0069 19 1 14.0363 -5.0504 0.1354 20 1 14.0335 -2.6585 -0.2642 21 6 4.6454 -0.1967 -1.1950 22 9 5.3198 -0.3880 -2.3498 23 6 3.2654 -0.1971 -1.1932 24 1 2.7241 0.3624 2.1137 25 1 7.0130 -1.9752 0.3295 26 1 9.3247 -0.7835 -0.7717 27 1 9.3251 -0.4910 0.9840 28 1 9.1112 -2.9274 1.3906 29 1 9.1108 -3.2206 -0.3650 30 1 11.5011 -5.6940 0.9516 31 1 2.7245 -0.3508 -2.1153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272980890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:30 Heat of formation + Delta-G solvation = -97.001659 kcal Electronic energy + Delta-G solvation = -20226.584299 eV Core-core repulsion = 16529.268555 eV Total energy + Delta-G solvation = -3697.315743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.27645 -50.25611 -41.16427 -39.92914 -37.54092 -36.70167 -34.88286 -33.14539 -31.79874 -31.37644 -27.41718 -25.95634 -24.22461 -23.06932 -22.12451 -20.82346 -19.22126 -18.78328 -18.48683 -17.70114 -17.49924 -17.04250 -16.78654 -16.54320 -16.52180 -16.28166 -16.14483 -15.24918 -15.06624 -14.76596 -14.66514 -14.58848 -14.31106 -13.57983 -13.52533 -13.25021 -13.16087 -12.97668 -12.93412 -12.54220 -12.27006 -11.76991 -11.51350 -11.17724 -10.60636 -10.37521 -10.19281 -10.07684 -8.23581 -6.33869 -0.96740 -0.31310 1.21239 1.37362 1.40993 1.43365 1.43482 1.54851 1.96264 2.19436 2.40814 2.43093 2.69079 3.11596 3.11999 3.36060 3.52321 3.65872 3.98820 4.35289 4.41166 4.46290 4.49292 4.63311 4.78721 4.82422 5.12368 5.27544 5.44494 5.56917 5.77404 6.14849 6.24109 6.34461 6.78644 6.96003 7.35484 8.88212 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.003337 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.991358 B = 8389.222753 C = 8482.031537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.283 3.717 3 C 0.060 3.940 4 C -0.089 4.089 5 C 0.158 3.842 6 F -0.124 7.124 7 C -0.181 4.181 8 C 0.553 3.447 9 O -0.566 6.566 10 N -0.700 5.700 11 C 0.138 3.862 12 C 0.023 3.977 13 C -0.547 4.547 14 H 0.060 0.940 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.266 1.266 21 C 0.158 3.842 22 F -0.124 7.124 23 C -0.089 4.089 24 H 0.191 0.809 25 H 0.413 0.587 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.266 0.734 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.685 7.900 -1.314 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.033 4.033 3 C 0.057 3.943 4 C -0.110 4.110 5 C 0.137 3.863 6 F -0.103 7.103 7 C -0.187 4.187 8 C 0.338 3.662 9 O -0.446 6.446 10 N -0.350 5.350 11 C 0.015 3.985 12 C -0.015 4.015 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.789 3.211 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.191 1.191 21 C 0.138 3.862 22 F -0.103 7.103 23 C -0.110 4.110 24 H 0.208 0.792 25 H 0.249 0.751 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.907 8.434 -1.407 21.666 hybrid contribution 1.817 -0.613 0.113 1.921 sum -18.090 7.821 -1.295 19.751 Atomic orbital electron populations 1.81379 1.12717 1.08437 1.07585 1.24993 0.91633 0.93349 0.93317 1.15153 0.84206 1.01903 0.93082 1.21275 0.90162 0.99112 1.00481 1.17016 0.89858 0.99668 0.79711 1.91613 1.80559 1.91957 1.46139 1.20142 0.93479 1.10228 0.94844 1.18293 0.87185 0.83924 0.76796 1.90805 1.70263 1.32854 1.50662 1.46172 1.08325 1.10156 1.70301 1.21377 0.77299 0.99401 1.00424 1.19137 0.95502 0.90401 0.96412 1.21453 0.92488 0.94562 1.50010 0.92194 1.25849 1.03718 0.95075 0.94439 1.70054 1.37575 0.99383 1.49498 0.85458 0.79320 0.77670 0.78689 1.19799 1.20580 1.19065 1.17011 0.89856 0.99593 0.79787 1.91611 1.80545 1.91982 1.46128 1.21273 0.90160 0.99144 1.00455 0.79174 0.75059 0.92877 0.92869 0.97108 0.97095 0.92531 0.79173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.28 18.54 19.00 0.35 -6.93 16 2 C 0.28 3.24 15.31 88.33 1.35 4.60 16 3 C 0.06 0.54 5.73 -21.37 -0.12 0.42 16 4 C -0.09 -0.88 9.71 22.55 0.22 -0.66 16 5 C 0.16 2.84 7.28 22.63 0.16 3.01 16 6 F -0.12 -2.82 16.82 44.97 0.76 -2.07 16 7 C -0.18 -4.15 5.64 -19.98 -0.11 -4.26 16 8 C 0.55 18.41 6.51 86.72 0.56 18.98 16 9 O -0.57 -23.44 17.11 -3.96 -0.07 -23.50 16 10 N -0.70 -23.91 5.55 -466.19 -2.59 -26.50 16 11 C 0.14 5.79 5.61 86.38 0.48 6.28 16 12 C 0.02 1.13 5.09 29.85 0.15 1.28 16 13 C -0.55 -30.01 9.11 25.60 0.23 -29.77 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.01 0.45 5.46 84.65 0.46 0.91 16 16 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 17 Si 0.96 43.05 29.54 68.60 2.03 45.07 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.16 2.84 7.28 22.62 0.16 3.01 16 22 F -0.12 -2.82 16.82 44.97 0.76 -2.07 16 23 C -0.09 -0.88 9.71 22.55 0.22 -0.66 16 24 H 0.19 0.79 8.06 -2.91 -0.02 0.76 16 25 H 0.41 12.04 8.46 -92.71 -0.78 11.25 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.19 0.79 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -69.93 304.60 5.72 -64.21 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 0.42 Total: 1.86 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 3.78 Total: 3.12 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.95 Total: -86.63 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.07 Total: -23.50 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 1.51 Total: -4.13 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.93 5.72 -64.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272980890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.790 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds