Wall clock time and date at job start Tue Mar 31 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00056 * 2 1 4 4 H 1.48496 * 109.46927 * 270.00227 * 3 2 1 5 5 H 1.48498 * 109.46735 * 29.99795 * 3 2 1 6 6 H 1.48493 * 109.46988 * 150.00303 * 3 2 1 7 7 C 1.37881 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99814 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47161 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99935 * 180.02562 * 11 10 9 13 13 O 1.21696 * 119.99763 * 359.97438 * 12 11 10 14 14 C 1.46389 * 119.99784 * 180.02562 * 12 11 10 15 15 C 1.34844 * 119.99772 * 179.97438 * 14 12 11 16 16 C 1.47160 * 120.00049 * 179.97438 * 15 14 12 17 17 C 1.40327 * 120.56787 * 180.02562 * 16 15 14 18 18 C 1.38199 * 118.28083 * 179.97438 * 17 16 15 19 19 C 1.38595 * 119.32368 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.44442 * 179.97438 * 19 18 17 21 21 N 1.32051 * 121.10583 * 0.27620 * 19 18 17 22 22 C 1.31664 * 121.88436 * 359.43025 * 21 19 18 23 23 H 0.97003 * 119.99897 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46999 * 60.00325 * 9 7 2 25 25 H 1.09002 * 109.47803 * 300.00378 * 9 7 2 26 26 H 1.09003 * 109.46347 * 60.00534 * 10 9 7 27 27 H 1.08994 * 109.47067 * 300.00289 * 10 9 7 28 28 H 0.97005 * 120.00057 * 0.02562 * 11 10 9 29 29 H 1.07994 * 119.99865 * 359.97438 * 14 12 11 30 30 H 1.08000 * 119.99919 * 0.02562 * 15 14 12 31 31 H 1.07996 * 120.85810 * 0.02562 * 17 16 15 32 32 H 1.07997 * 120.33611 * 179.97438 * 18 17 16 33 33 H 1.07995 * 119.73224 * 180.29033 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6366 0.0014 11 7 5.4866 -2.6365 0.0014 12 6 6.1605 -3.8037 0.0020 13 8 5.5520 -4.8576 0.0030 14 6 7.6244 -3.8037 0.0027 15 6 8.2986 -4.9714 0.0038 16 6 9.7702 -4.9714 0.0039 17 6 10.4838 -6.1797 0.0045 18 6 11.8647 -6.1246 0.0040 19 6 12.4947 -4.8901 0.0034 20 17 14.2292 -4.8171 0.0034 21 7 11.7978 -3.7685 0.0088 22 6 10.4811 -3.7678 0.0038 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8746 -0.6807 -0.8905 26 1 3.6579 -3.1513 -0.8880 27 1 3.6586 -3.1494 0.8920 28 1 5.9716 -1.7964 0.0010 29 1 8.1643 -2.8684 0.0022 30 1 7.7586 -5.9067 0.0039 31 1 9.9673 -7.1281 0.0046 32 1 12.4469 -7.0341 0.0049 33 1 9.9460 -2.8298 0.0037 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273035895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:20 Heat of formation + Delta-G solvation = -24.964160 kcal Electronic energy + Delta-G solvation = -17529.280531 eV Core-core repulsion = 14386.885248 eV Total energy + Delta-G solvation = -3142.395283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34799 -40.59361 -37.76403 -36.71750 -35.46803 -34.78476 -33.54378 -32.18528 -30.68612 -27.25028 -25.49009 -24.76731 -22.93414 -22.35820 -20.64210 -19.06244 -18.75996 -18.36668 -17.36416 -16.69573 -16.46212 -16.29777 -16.00187 -15.60159 -15.34478 -14.93862 -14.90158 -14.54117 -14.34359 -13.35086 -13.20845 -13.09157 -13.08473 -12.98837 -12.36775 -12.18829 -12.16320 -11.75586 -11.66938 -11.51396 -11.02177 -10.80072 -10.78181 -10.70004 -10.08386 -9.43276 -8.29441 -6.36756 -0.80178 0.09022 0.73871 0.75666 1.40286 1.42857 1.54039 2.24333 2.29057 2.37615 2.67890 3.05723 3.33245 3.49637 3.71054 3.80101 3.92116 4.14891 4.18555 4.38857 4.43848 4.60840 4.75953 4.78691 4.83533 5.13804 5.23796 5.27031 5.41005 5.41759 5.45672 5.65365 6.22717 6.57577 6.62850 6.72287 7.27123 7.28645 8.87258 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.036609 B = 0.002425 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.647359 B =11543.928787 C =12288.129104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.014 4.014 10 C 0.143 3.857 11 N -0.710 5.710 12 C 0.534 3.466 13 O -0.596 6.596 14 C -0.193 4.193 15 C -0.016 4.016 16 C -0.120 4.120 17 C -0.036 4.036 18 C -0.149 4.149 19 C 0.160 3.840 20 Cl -0.032 7.032 21 N -0.505 5.505 22 C 0.130 3.870 23 H 0.268 0.732 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.416 0.584 29 H 0.165 0.835 30 H 0.137 0.863 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.275 -9.585 0.028 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.051 4.051 10 C 0.019 3.981 11 N -0.360 5.360 12 C 0.324 3.676 13 O -0.479 6.479 14 C -0.213 4.213 15 C -0.036 4.036 16 C -0.122 4.122 17 C -0.062 4.062 18 C -0.169 4.169 19 C -0.003 4.003 20 Cl -0.003 7.003 21 N -0.216 5.216 22 C -0.028 4.028 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.253 0.747 29 H 0.182 0.818 30 H 0.155 0.845 31 H 0.197 0.803 32 H 0.193 0.807 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 30.301 -9.391 0.038 31.723 hybrid contribution -0.653 0.300 -0.027 0.719 sum 29.648 -9.091 0.012 31.011 Atomic orbital electron populations 1.70081 1.08604 1.28413 1.51999 1.26109 0.95712 1.03945 0.93714 0.85527 0.79713 0.77249 0.79315 1.19024 1.21406 1.15786 1.21271 0.91694 0.93331 1.51503 0.95326 1.19662 0.94351 0.92955 0.98162 1.21041 0.78594 0.98420 1.00030 1.45978 1.07425 1.09181 1.73432 1.18934 0.89442 0.83238 0.75976 1.90790 1.71743 1.32720 1.52678 1.23005 0.91106 1.01090 1.06139 1.22163 0.90851 0.99172 0.91427 1.20096 0.93713 0.95074 1.03323 1.22227 0.93042 0.99300 0.91607 1.22091 0.95420 0.97923 1.01497 1.22150 0.87797 0.90893 0.99483 1.98416 1.06921 1.98699 1.96306 1.66976 1.09505 1.30947 1.14132 1.23395 0.87587 0.99119 0.92712 0.92362 0.94388 0.94520 0.93710 0.93719 0.74680 0.81788 0.84514 0.80349 0.80711 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.96 41.83 27.47 68.60 1.88 43.71 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.23 -9.01 6.54 99.48 0.65 -8.36 16 7 C -0.54 -30.52 9.66 25.60 0.25 -30.27 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.59 4.16 29.85 0.12 -0.46 16 10 C 0.14 5.69 5.61 86.38 0.48 6.17 16 11 N -0.71 -20.94 5.55 -467.38 -2.59 -23.54 16 12 C 0.53 15.60 7.74 86.36 0.67 16.27 16 13 O -0.60 -22.87 16.23 -4.34 -0.07 -22.94 16 14 C -0.19 -3.52 9.42 23.61 0.22 -3.30 16 15 C -0.02 -0.25 9.48 23.83 0.23 -0.03 16 16 C -0.12 -1.61 5.88 -20.05 -0.12 -1.73 16 17 C -0.04 -0.36 9.94 22.77 0.23 -0.14 16 18 C -0.15 -1.56 9.86 22.35 0.22 -1.34 16 19 C 0.16 2.52 7.27 84.75 0.62 3.13 16 20 Cl -0.03 -0.47 29.10 -2.72 -0.08 -0.55 16 21 N -0.50 -9.23 10.32 -185.34 -1.91 -11.14 16 22 C 0.13 1.89 10.59 85.09 0.90 2.79 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.04 1.55 7.20 -2.38 -0.02 1.53 16 25 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.42 9.15 8.45 -92.70 -0.78 8.36 16 29 H 0.16 1.76 6.10 -2.91 -0.02 1.74 16 30 H 0.14 2.42 7.52 -2.91 -0.02 2.39 16 31 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 33 H 0.19 1.84 6.19 -2.91 -0.02 1.82 16 Total: -1.00 -75.07 310.19 2.12 -72.96 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.31 Total: 8.59 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 4.28 Total: -8.32 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -4.21 Total: -93.45 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.07 Total: -22.94 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.71 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -75.07 2.12 -72.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273035895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.993 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds