Wall clock time and date at job start Tue Mar 31 2020 01:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47172 * 2 1 4 4 H 1.08996 * 109.47357 * 304.99968 * 3 2 1 5 5 C 1.50706 * 109.47214 * 184.99915 * 3 2 1 6 6 H 1.07991 * 119.99968 * 240.00193 * 5 3 2 7 7 C 1.37876 * 119.99663 * 59.99692 * 5 3 2 8 8 N 1.31518 * 120.00318 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99957 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47118 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47535 * 119.99986 * 9 7 5 12 12 H 1.48495 * 109.46985 * 240.00461 * 9 7 5 13 13 N 1.46503 * 109.47223 * 65.00023 * 3 2 1 14 14 C 1.38604 * 119.99838 * 274.99553 * 13 3 2 15 15 N 1.29693 * 124.94983 * 180.27617 * 14 13 3 16 16 C 1.32116 * 116.86525 * 180.22811 * 15 14 13 17 17 C 1.50703 * 122.70891 * 179.75707 * 16 15 14 18 18 F 1.39905 * 109.47157 * 269.71101 * 17 16 15 19 19 F 1.39900 * 109.47159 * 149.71401 * 17 16 15 20 20 F 1.39897 * 109.47274 * 29.71092 * 17 16 15 21 21 C 1.33326 * 114.58430 * 359.48729 * 16 15 14 22 22 S 1.70972 * 124.95220 * 359.97438 * 14 13 3 23 23 H 1.08995 * 109.47042 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46966 * 300.00083 * 1 2 3 25 25 H 1.08998 * 109.46853 * 59.99619 * 1 2 3 26 26 H 1.08999 * 109.46756 * 239.99436 * 2 1 3 27 27 H 1.09002 * 109.46861 * 119.99879 * 2 1 3 28 28 H 0.96993 * 119.99796 * 179.97438 * 8 7 5 29 29 H 0.96997 * 120.00123 * 95.00036 * 13 3 2 30 30 H 1.07994 * 125.95691 * 180.24227 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8798 -1.3811 10 1 6.5989 1.5451 -0.1937 11 1 6.4963 -0.5192 -1.4626 12 1 6.4000 1.6155 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4007 2.6806 1.3702 15 7 -0.0389 3.2882 2.4283 16 6 -1.2624 3.7828 2.3678 17 6 -1.9054 4.5085 3.5214 18 9 -2.5938 3.5919 4.3235 19 9 -2.8019 5.4636 3.0302 20 9 -0.9176 5.1436 4.2817 21 6 -1.8803 3.5931 1.2017 22 16 -0.7864 2.7101 0.1401 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0605 -2.9502 29 1 2.2720 2.1231 1.9978 30 1 -2.8778 3.9229 0.9515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273830285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:15 Heat of formation + Delta-G solvation = -122.363067 kcal Electronic energy + Delta-G solvation = -19759.013763 eV Core-core repulsion = 16072.581913 eV Total energy + Delta-G solvation = -3686.431850 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.17621 -48.69839 -48.64848 -40.79338 -38.30600 -34.77075 -33.02597 -31.16800 -28.77159 -27.79660 -25.32803 -24.21919 -22.41551 -21.48429 -19.95960 -19.56369 -19.12435 -18.77454 -17.72660 -17.14507 -16.92827 -16.31486 -15.76258 -15.51271 -15.45578 -15.09784 -14.83652 -14.81546 -14.70679 -14.51340 -14.36303 -13.83395 -13.67221 -13.24069 -12.90392 -12.76313 -12.65318 -12.13527 -12.13013 -11.70775 -11.38359 -11.05234 -10.70656 -10.54750 -10.08236 -8.63183 -8.23294 -6.38338 -0.15338 0.14591 0.61982 1.42339 1.46135 1.53396 1.53781 1.57559 2.18121 2.42461 2.80365 3.07704 3.11397 3.37547 4.10328 4.29718 4.42940 4.47279 4.57956 4.72678 4.89937 5.17408 5.26425 5.43974 5.56945 5.72125 5.89408 6.09269 6.57167 6.64731 6.90505 7.32959 8.81783 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.032751 B = 0.004615 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.740598 B = 6065.694164 C = 6459.656794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.278 3.722 4 H 0.027 0.973 5 C -0.552 4.552 6 H 0.063 0.937 7 C 0.030 3.970 8 N -0.904 5.904 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.667 5.667 14 C 0.313 3.687 15 N -0.575 5.575 16 C 0.002 3.998 17 C 0.553 3.447 18 F -0.173 7.173 19 F -0.163 7.163 20 F -0.176 7.176 21 C -0.265 4.265 22 S 0.186 5.814 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.269 0.731 29 H 0.406 0.594 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 4.205 4.450 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.176 3.824 4 H 0.045 0.955 5 C -0.590 4.590 6 H 0.081 0.919 7 C -0.172 4.172 8 N -0.542 5.542 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.303 5.303 14 C -0.059 4.059 15 N -0.303 5.303 16 C -0.133 4.133 17 C 0.496 3.504 18 F -0.155 7.155 19 F -0.144 7.144 20 F -0.157 7.157 21 C -0.409 4.409 22 S 0.437 5.563 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.242 0.758 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.134 3.671 3.512 11.336 hybrid contribution 0.941 0.457 1.090 1.511 sum -9.193 4.128 4.602 11.079 Atomic orbital electron populations 1.22108 0.96459 1.01580 1.00652 1.21954 0.94320 0.98633 1.02031 1.18859 0.94809 0.89563 0.79190 0.95527 1.21417 0.91183 1.39557 1.06814 0.91925 1.25522 1.02657 0.94091 0.94922 1.69943 1.36752 1.37793 1.09709 0.85431 0.79828 0.77872 0.78046 1.19535 1.20366 1.20582 1.44908 1.09932 1.57025 1.18419 1.23745 0.93795 0.95255 0.93097 1.65932 1.14510 1.21621 1.28273 1.19533 0.92312 1.06144 0.95276 1.17191 0.75858 0.76647 0.80744 1.93212 1.80289 1.66765 1.75218 1.93202 1.68648 1.64920 1.87657 1.93190 1.62185 1.82782 1.77560 1.26831 1.07647 1.09919 0.96549 1.84451 1.04958 1.51035 1.15894 0.91897 0.93890 0.92332 0.89696 0.94444 0.92149 0.75771 0.77060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 8.16 71.99 0.59 -4.65 16 2 C -0.13 -5.50 5.45 30.60 0.17 -5.33 16 3 C 0.28 12.42 2.23 44.24 0.10 12.52 16 4 H 0.03 1.29 7.25 -2.39 -0.02 1.28 16 5 C -0.55 -27.15 8.73 25.60 0.22 -26.92 16 6 H 0.06 3.06 7.74 -2.92 -0.02 3.04 16 7 C 0.03 1.47 5.29 84.65 0.45 1.92 16 8 N -0.90 -46.12 11.30 21.45 0.24 -45.88 16 9 Si 0.96 39.84 29.54 68.60 2.03 41.86 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 13 N -0.67 -26.79 5.16 -333.97 -1.72 -28.51 16 14 C 0.31 11.69 6.87 179.32 1.23 12.93 16 15 N -0.58 -21.47 10.40 -189.86 -1.97 -23.45 16 16 C 0.00 0.05 6.20 41.41 0.26 0.31 16 17 C 0.55 15.81 3.49 71.24 0.25 16.06 16 18 F -0.17 -4.87 17.30 44.97 0.78 -4.10 16 19 F -0.16 -4.02 16.82 44.97 0.76 -3.27 16 20 F -0.18 -5.50 17.15 44.97 0.77 -4.73 16 21 C -0.27 -7.17 10.66 66.71 0.71 -6.46 16 22 S 0.19 5.76 17.60 -56.49 -0.99 4.77 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.04 1.47 5.28 -3.23 -0.02 1.45 16 25 H 0.06 1.97 6.83 -2.39 -0.02 1.96 16 26 H 0.08 4.03 5.95 -2.39 -0.01 4.02 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 29 H 0.41 15.97 8.66 -92.71 -0.80 15.17 16 30 H 0.21 4.07 7.99 -2.91 -0.02 4.04 16 Total: -1.00 -52.23 277.97 4.25 -47.98 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.40 Total: 14.96 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 3.97 Total: 0.36 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.46 Total: -97.84 kcal Atomic # 9 Polarization: -14.40 SS G_CDS: 2.31 Total: -12.09 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.86 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -0.99 Total: 4.77 kcal Total: -52.23 4.25 -47.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273830285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.387 kcal (2) G-P(sol) polarization free energy of solvation -52.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds