Wall clock time and date at job start Tue Mar 31 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47681 * 24.74997 * 3 2 1 5 5 C 1.37098 * 119.99771 * 263.92818 * 4 3 2 6 6 H 1.07999 * 119.99732 * 199.74726 * 5 4 3 7 7 C 1.38944 * 120.00205 * 19.74775 * 5 4 3 8 8 N 1.31408 * 120.00151 * 21.74718 * 7 5 4 9 9 Si 1.86806 * 120.00018 * 201.74871 * 7 5 4 10 10 H 1.48504 * 109.47095 * 89.99767 * 9 7 5 11 11 H 1.48500 * 109.47092 * 209.99826 * 9 7 5 12 12 H 1.48494 * 109.47087 * 330.00024 * 9 7 5 13 13 C 1.34783 * 119.99984 * 83.92285 * 4 3 2 14 14 O 1.21285 * 119.99811 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99632 * 0.02562 * 13 4 3 16 16 S 1.81004 * 109.46771 * 180.02562 * 15 13 4 17 17 C 1.76189 * 100.00084 * 180.02562 * 16 15 13 18 18 N 1.31654 * 126.08736 * 0.02562 * 17 16 15 19 19 C 1.33347 * 109.69172 * 179.97438 * 18 17 16 20 20 C 1.50698 * 125.42865 * 179.97438 * 19 18 17 21 21 N 1.30590 * 109.13845 * 0.02562 * 19 18 17 22 22 N 1.35073 * 126.08896 * 180.02562 * 17 16 15 23 23 H 0.97005 * 126.83396 * 0.03444 * 22 17 16 24 24 H 4.40647 * 5.51398 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47173 * 264.74631 * 3 2 1 26 26 H 1.09007 * 109.46866 * 144.74686 * 3 2 1 27 27 H 0.96997 * 120.00268 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47205 * 60.00297 * 15 13 4 29 29 H 1.08999 * 109.47210 * 299.99750 * 15 13 4 30 30 H 1.09004 * 109.46711 * 90.00289 * 20 19 18 31 31 H 1.08998 * 109.46808 * 209.99988 * 20 19 18 32 32 H 1.08993 * 109.47055 * 330.00062 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2534 -0.5782 5 6 3.4824 -2.2964 0.2410 6 1 4.1260 -3.0814 -0.1278 7 6 3.0065 -2.3435 1.5455 8 7 1.9253 -1.6734 1.8751 9 14 3.9039 -3.3594 2.8310 10 1 4.9295 -2.5184 3.4990 11 1 2.9320 -3.8504 3.8407 12 1 4.5635 -4.5168 2.1751 13 6 3.2432 -1.3818 -1.9156 14 8 3.6477 -2.4202 -2.3943 15 6 2.8618 -0.2351 -2.8159 16 16 3.1160 -0.7137 -4.5429 17 6 2.6077 0.7681 -5.3491 18 7 2.1785 1.8640 -4.7589 19 6 1.8827 2.7832 -5.6786 20 6 1.3607 4.1678 -5.3934 21 7 2.1163 2.2918 -6.8657 22 7 2.5889 0.9822 -6.6826 23 1 2.8497 0.3558 -7.3759 24 1 -1.0498 -0.0003 -0.0003 25 1 3.0093 0.0949 1.0233 26 1 3.0089 0.8401 -0.5932 27 1 1.5928 -1.7066 2.7858 28 1 3.4814 0.6309 -2.5835 29 1 1.8127 0.0161 -2.6595 30 1 2.1986 4.8558 -5.2807 31 1 0.7300 4.4956 -6.2197 32 1 0.7761 4.1534 -4.4736 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282090788.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:47 Heat of formation + Delta-G solvation = 100.965271 kcal Electronic energy + Delta-G solvation = -18806.117376 eV Core-core repulsion = 15703.519261 eV Total energy + Delta-G solvation = -3102.598115 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.02310 -40.54547 -37.15644 -34.33213 -34.13054 -33.07291 -32.88162 -30.94985 -29.27522 -28.17970 -26.36455 -24.34798 -21.69744 -21.23009 -19.84054 -19.66526 -18.44364 -18.04532 -17.57020 -16.93567 -16.51473 -16.35300 -15.98871 -15.09810 -14.77775 -14.63572 -14.46479 -13.98977 -13.90761 -13.61832 -13.50233 -13.30119 -13.16988 -12.77686 -12.47514 -12.15057 -11.82716 -11.41929 -11.25451 -11.18841 -11.09194 -11.04742 -10.70813 -10.47748 -9.87554 -8.90837 -8.33606 -5.96739 -0.17320 0.32449 0.84305 1.36810 1.46354 1.56783 1.68159 1.79364 1.85299 2.11370 2.33673 2.39471 3.01493 3.05117 3.43732 3.57528 3.81591 3.93151 4.05656 4.35227 4.66427 4.75543 4.77555 4.85656 4.92181 5.05731 5.41872 5.44371 5.47611 5.86961 5.98780 6.36386 6.85908 7.07184 7.15504 7.32552 7.84998 8.64471 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028184 B = 0.004505 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.238412 B = 6213.926059 C = 6946.763501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.156 4.156 3 C 0.232 3.768 4 N -0.436 5.436 5 C -0.354 4.354 6 H 0.081 0.919 7 C 0.008 3.992 8 N -0.866 5.866 9 Si 0.985 3.015 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.452 3.548 14 O -0.611 6.611 15 C -0.111 4.111 16 S 0.084 5.916 17 C 0.246 3.754 18 N -0.561 5.561 19 C 0.222 3.778 20 C -0.057 4.057 21 N -0.330 5.330 22 N -0.458 5.458 23 H 0.456 0.544 24 H 0.231 0.769 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.274 0.726 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 10.336 -8.963 13.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.157 4.157 3 C 0.109 3.891 4 N -0.153 5.153 5 C -0.481 4.481 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.502 5.502 9 Si 0.809 3.191 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.201 1.201 13 C 0.240 3.760 14 O -0.499 6.499 15 C -0.263 4.263 16 S 0.310 5.690 17 C -0.140 4.140 18 N -0.296 5.296 19 C -0.062 4.062 20 C -0.116 4.116 21 N -0.162 5.162 22 N -0.180 5.180 23 H 0.305 0.695 24 H 0.247 0.753 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.757 9.354 -9.734 13.521 hybrid contribution -0.218 -0.205 0.950 0.996 sum -0.976 9.149 -8.784 12.721 Atomic orbital electron populations 1.25108 0.96346 1.01332 1.03061 1.23321 0.94896 0.99158 0.98363 1.18358 0.84728 0.85420 1.00565 1.43760 1.54951 1.12971 1.03629 1.19604 1.29802 1.05146 0.93551 0.90159 1.25998 0.95124 0.98805 0.99731 1.70175 1.17822 1.41897 1.20263 0.85064 0.78202 0.78399 0.77451 1.18861 1.20485 1.20125 1.19797 0.84643 0.88409 0.83110 1.90529 1.53022 1.31747 1.74582 1.23533 1.07768 1.01672 0.93321 1.86343 1.79540 1.03467 0.99602 1.26874 0.99487 1.01011 0.86593 1.71012 1.24151 1.00172 1.34250 1.25158 0.96516 0.98961 0.85539 1.20302 1.02230 0.84711 1.04386 1.77797 1.23679 0.91786 1.22917 1.47761 1.51782 1.12519 1.05960 0.69526 0.75259 0.88714 0.88249 0.91623 0.85267 0.86684 0.88187 0.88393 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.30 19.25 74.32 1.43 -7.87 16 2 C -0.16 -6.63 10.76 31.12 0.33 -6.29 16 3 C 0.23 9.73 4.91 84.57 0.42 10.14 16 4 N -0.44 -21.31 2.60 -645.42 -1.68 -22.98 16 5 C -0.35 -19.06 9.28 84.04 0.78 -18.28 16 6 H 0.08 4.65 7.42 -2.91 -0.02 4.63 16 7 C 0.01 0.41 4.83 84.93 0.41 0.82 16 8 N -0.87 -43.50 9.59 21.66 0.21 -43.29 16 9 Si 0.98 40.41 29.61 68.60 2.03 42.44 16 10 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.45 21.22 7.58 87.66 0.66 21.89 16 14 O -0.61 -32.80 15.53 -3.04 -0.05 -32.84 16 15 C -0.11 -4.02 4.30 71.24 0.31 -3.71 16 16 S 0.08 2.71 21.45 -56.49 -1.21 1.50 16 17 C 0.25 7.24 8.31 179.91 1.50 8.74 16 18 N -0.56 -17.17 10.58 -188.26 -1.99 -19.16 16 19 C 0.22 5.91 8.13 138.63 1.13 7.04 16 20 C -0.06 -0.97 10.51 71.24 0.75 -0.22 16 21 N -0.33 -8.94 12.78 -51.34 -0.66 -9.60 16 22 N -0.46 -11.56 7.47 -57.58 -0.43 -11.99 16 23 H 0.46 8.41 8.96 -213.11 -1.91 6.50 16 24 H 0.23 6.98 7.80 -4.43 -0.03 6.94 16 25 H 0.09 4.20 6.60 -2.39 -0.02 4.18 16 26 H 0.10 3.39 6.70 -2.38 -0.02 3.38 16 27 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 28 H 0.13 4.15 7.42 -2.40 -0.02 4.13 16 29 H 0.11 4.18 7.49 -2.40 -0.02 4.16 16 30 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.49 303.90 3.20 -64.29 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -0.74 Total: 19.38 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 7.71 Total: 12.26 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -4.55 Total: -107.03 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.05 Total: -32.84 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.21 Total: 1.50 kcal Total: -67.49 3.20 -64.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282090788.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.259 kcal (2) G-P(sol) polarization free energy of solvation -67.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds