Wall clock time and date at job start Tue Mar 31 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47504 * 339.78286 * 3 2 1 5 5 C 1.36892 * 120.00124 * 95.05183 * 4 3 2 6 6 H 1.07997 * 119.99932 * 231.43898 * 5 4 3 7 7 C 1.39009 * 119.99649 * 51.16803 * 5 4 3 8 8 N 1.31393 * 119.99792 * 200.23007 * 7 5 4 9 9 Si 1.86800 * 120.00306 * 20.22901 * 7 5 4 10 10 H 1.48502 * 109.47275 * 89.66540 * 9 7 5 11 11 H 1.48501 * 109.47119 * 209.67075 * 9 7 5 12 12 H 1.48502 * 109.47117 * 329.66732 * 9 7 5 13 13 C 1.34773 * 119.99849 * 275.05309 * 4 3 2 14 14 O 1.21731 * 120.00265 * 355.23500 * 13 4 3 15 15 C 1.46561 * 120.00114 * 175.23900 * 13 4 3 16 16 S 1.76213 * 126.17977 * 4.32525 * 15 13 4 17 17 C 1.70925 * 90.37559 * 179.97438 * 16 15 13 18 18 N 1.29373 * 110.59306 * 0.32330 * 17 16 15 19 19 C 1.30939 * 117.46995 * 359.74509 * 18 17 16 20 20 C 1.50699 * 123.03952 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47144 * 269.99891 * 20 19 18 22 22 C 1.42898 * 114.00210 * 180.02562 * 21 20 19 23 23 H 4.40638 * 5.51530 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.47144 * 219.77893 * 3 2 1 25 25 H 1.09007 * 109.47033 * 99.78788 * 3 2 1 26 26 H 0.97006 * 120.00464 * 180.02562 * 8 7 5 27 27 H 1.08002 * 124.69616 * 180.02562 * 17 16 15 28 28 H 1.08996 * 109.47389 * 30.00355 * 20 19 18 29 29 H 1.09001 * 109.47175 * 149.99912 * 20 19 18 30 30 H 1.09000 * 109.46976 * 59.99517 * 22 21 20 31 31 H 1.08992 * 109.47343 * 180.02562 * 22 21 20 32 32 H 1.09009 * 109.46757 * 300.00351 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2952 0.4773 5 6 3.4620 -2.2760 -0.4199 6 1 3.0486 -3.2677 -0.3103 7 6 4.3218 -1.9940 -1.4751 8 7 4.3339 -2.7674 -2.5373 9 14 5.4600 -0.5157 -1.3832 10 1 6.7461 -0.9190 -0.7599 11 1 5.7136 -0.0004 -2.7526 12 1 4.8249 0.5477 -0.5640 13 6 3.2628 -1.5216 1.7997 14 8 3.0554 -0.6228 2.5940 15 6 3.6516 -2.8501 2.2815 16 16 4.0928 -4.2316 1.2806 17 6 4.3452 -5.1794 2.6804 18 7 4.1038 -4.4887 3.7473 19 6 3.7313 -3.2434 3.5891 20 6 3.4192 -2.3262 4.7434 21 8 2.0317 -2.4266 5.0700 22 6 1.6286 -1.5919 6.1576 23 1 -1.0498 -0.0004 0.0004 24 1 3.0090 0.7907 0.6576 25 1 3.0092 0.1755 -1.0128 26 1 4.9342 -2.5709 -3.2736 27 1 4.6578 -6.2132 2.6747 28 1 4.0177 -2.6135 5.6079 29 1 3.6535 -1.2988 4.4648 30 1 1.8256 -0.5494 5.9078 31 1 0.5630 -1.7264 6.3432 32 1 2.1900 -1.8637 7.0516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285073598.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:12 Heat of formation + Delta-G solvation = 38.127193 kcal Electronic energy + Delta-G solvation = -19724.464628 eV Core-core repulsion = 16586.848898 eV Total energy + Delta-G solvation = -3137.615730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.58055 -38.47716 -37.00579 -35.33027 -32.96416 -31.90417 -30.56901 -28.16564 -26.59791 -25.75959 -24.71963 -23.83081 -20.71590 -19.08240 -18.10486 -17.86560 -16.73442 -16.13161 -15.92165 -15.42209 -15.09837 -14.76803 -14.47961 -14.25827 -13.86373 -13.54593 -13.08434 -12.82266 -12.57395 -12.31547 -12.05963 -11.86231 -11.27292 -11.14154 -11.08015 -10.51150 -10.38315 -9.90788 -9.68565 -9.50839 -9.30227 -8.89837 -8.69414 -8.62429 -8.27326 -7.88444 -6.84944 -4.61336 1.01701 2.16590 2.59573 2.92582 3.02929 3.07899 3.09052 3.22509 3.46649 3.86085 3.90247 4.36383 4.48264 4.62123 4.94737 5.05452 5.50567 5.55851 5.65198 5.74328 5.83755 5.90168 5.97951 6.07352 6.18162 6.31480 6.48233 6.74189 7.05523 7.55322 7.72174 7.81132 8.21013 8.36212 8.56835 8.93630 9.32597 10.19835 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.008379 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.333113 B = 3340.987499 C = 4349.853343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.169 4.169 3 C 0.216 3.784 4 N -0.459 5.459 5 C -0.358 4.358 6 H 0.111 0.889 7 C 0.088 3.912 8 N -0.826 5.826 9 Si 0.866 3.134 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.249 1.249 13 C 0.564 3.436 14 O -0.570 6.570 15 C -0.247 4.247 16 S 0.305 5.695 17 C -0.085 4.085 18 N -0.478 5.478 19 C 0.096 3.904 20 C 0.138 3.862 21 O -0.381 6.381 22 C 0.037 3.963 23 H 0.212 0.788 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.284 0.716 27 H 0.183 0.817 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 0.917 5.159 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.170 4.170 3 C 0.094 3.906 4 N -0.179 5.179 5 C -0.490 4.490 6 H 0.127 0.873 7 C -0.126 4.126 8 N -0.457 5.457 9 Si 0.689 3.311 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.172 1.172 13 C 0.354 3.646 14 O -0.454 6.454 15 C -0.372 4.372 16 S 0.568 5.432 17 C -0.377 4.377 18 N -0.193 5.193 19 C -0.045 4.045 20 C 0.060 3.940 21 O -0.300 6.300 22 C -0.060 4.060 23 H 0.228 0.772 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.094 0.906 27 H 0.200 0.800 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.080 0.553 4.661 4.694 hybrid contribution 0.352 1.024 0.621 1.249 sum 0.272 1.578 5.282 5.519 Atomic orbital electron populations 1.24673 0.95671 1.01146 1.02817 1.23794 0.94985 0.99526 0.98694 1.18757 0.83328 0.87979 1.00533 1.43388 1.57140 1.13113 1.04277 1.18890 1.29827 0.92465 1.07865 0.87251 1.25540 0.95499 0.97692 0.93907 1.69749 1.33716 1.38201 1.04016 0.87066 0.82114 0.83112 0.78771 1.19115 1.20002 1.17247 1.17129 0.79135 0.85577 0.82760 1.90641 1.55216 1.44479 1.55071 1.25762 1.14124 1.00565 0.96782 1.85527 1.54769 0.98326 1.04577 1.29416 1.05021 1.05774 0.97513 1.65991 1.14546 1.05321 1.33395 1.20210 1.00991 0.91028 0.92282 1.20917 0.82488 0.98001 0.92638 1.87907 1.24949 1.65030 1.52072 1.22643 1.00129 0.94418 0.88804 0.77159 0.88883 0.88696 0.90555 0.80023 0.92991 0.89197 0.93894 0.90167 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.13 19.25 29.55 0.57 -3.56 16 2 C -0.17 -3.53 13.63 -37.12 -0.51 -4.03 16 3 C 0.22 4.61 3.89 -6.83 -0.03 4.59 16 4 N -0.46 -10.70 1.85 -119.46 -0.22 -10.92 16 5 C -0.36 -8.54 7.29 -15.01 -0.11 -8.65 16 6 H 0.11 2.73 5.53 -32.16 -0.18 2.55 16 7 C 0.09 2.06 5.21 -17.45 -0.09 1.97 16 8 N -0.83 -20.05 13.96 55.50 0.77 -19.28 16 9 Si 0.87 17.97 26.62 -169.99 -4.53 13.44 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.25 -4.97 5.32 56.52 0.30 -4.67 16 13 C 0.56 13.43 7.54 -12.91 -0.10 13.34 16 14 O -0.57 -14.02 13.95 5.16 0.07 -13.95 16 15 C -0.25 -5.51 6.35 -36.75 -0.23 -5.74 16 16 S 0.30 5.95 18.57 -107.50 -2.00 3.95 16 17 C -0.09 -1.52 12.21 51.73 0.63 -0.89 16 18 N -0.48 -9.70 10.49 -11.29 -0.12 -9.82 16 19 C 0.10 2.05 6.46 -83.50 -0.54 1.51 16 20 C 0.14 2.71 5.83 36.01 0.21 2.92 16 21 O -0.38 -7.57 10.69 -35.23 -0.38 -7.95 16 22 C 0.04 0.54 11.01 101.05 1.11 1.65 16 23 H 0.21 2.92 7.80 -54.10 -0.42 2.50 16 24 H 0.09 1.92 7.40 -51.92 -0.38 1.53 16 25 H 0.10 1.93 5.27 -51.93 -0.27 1.66 16 26 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 27 H 0.18 2.50 8.06 -52.49 -0.42 2.08 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.83 5.96 -51.93 -0.31 1.52 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -28.89 295.22 -3.94 -32.83 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.92 Total: 4.12 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 0.92 Total: 3.11 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.43 Total: -40.01 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.30 Total: -21.90 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.53 Total: 13.44 kcal Atomic # 16 Polarization: 5.95 SS G_CDS: -2.00 Total: 3.95 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.89 -3.94 -32.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285073598.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.956 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds