Wall clock time and date at job start Tue Mar 31 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47504 * 339.78286 * 3 2 1 5 5 C 1.36892 * 120.00124 * 95.05183 * 4 3 2 6 6 H 1.07997 * 119.99932 * 231.43898 * 5 4 3 7 7 C 1.39009 * 119.99649 * 51.16803 * 5 4 3 8 8 N 1.31393 * 119.99792 * 200.23007 * 7 5 4 9 9 Si 1.86800 * 120.00306 * 20.22901 * 7 5 4 10 10 H 1.48502 * 109.47275 * 89.66540 * 9 7 5 11 11 H 1.48501 * 109.47119 * 209.67075 * 9 7 5 12 12 H 1.48502 * 109.47117 * 329.66732 * 9 7 5 13 13 C 1.34773 * 119.99849 * 275.05309 * 4 3 2 14 14 O 1.21731 * 120.00265 * 355.23500 * 13 4 3 15 15 C 1.46561 * 120.00114 * 175.23900 * 13 4 3 16 16 S 1.76213 * 126.17977 * 4.32525 * 15 13 4 17 17 C 1.70925 * 90.37559 * 179.97438 * 16 15 13 18 18 N 1.29373 * 110.59306 * 0.32330 * 17 16 15 19 19 C 1.30939 * 117.46995 * 359.74509 * 18 17 16 20 20 C 1.50699 * 123.03952 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47144 * 269.99891 * 20 19 18 22 22 C 1.42898 * 114.00210 * 180.02562 * 21 20 19 23 23 H 4.40638 * 5.51530 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.47144 * 219.77893 * 3 2 1 25 25 H 1.09007 * 109.47033 * 99.78788 * 3 2 1 26 26 H 0.97006 * 120.00464 * 180.02562 * 8 7 5 27 27 H 1.08002 * 124.69616 * 180.02562 * 17 16 15 28 28 H 1.08996 * 109.47389 * 30.00355 * 20 19 18 29 29 H 1.09001 * 109.47175 * 149.99912 * 20 19 18 30 30 H 1.09000 * 109.46976 * 59.99517 * 22 21 20 31 31 H 1.08992 * 109.47343 * 180.02562 * 22 21 20 32 32 H 1.09009 * 109.46757 * 300.00351 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2952 0.4773 5 6 3.4620 -2.2760 -0.4199 6 1 3.0486 -3.2677 -0.3103 7 6 4.3218 -1.9940 -1.4751 8 7 4.3339 -2.7674 -2.5373 9 14 5.4600 -0.5157 -1.3832 10 1 6.7461 -0.9190 -0.7599 11 1 5.7136 -0.0004 -2.7526 12 1 4.8249 0.5477 -0.5640 13 6 3.2628 -1.5216 1.7997 14 8 3.0554 -0.6228 2.5940 15 6 3.6516 -2.8501 2.2815 16 16 4.0928 -4.2316 1.2806 17 6 4.3452 -5.1794 2.6804 18 7 4.1038 -4.4887 3.7473 19 6 3.7313 -3.2434 3.5891 20 6 3.4192 -2.3262 4.7434 21 8 2.0317 -2.4266 5.0700 22 6 1.6286 -1.5919 6.1576 23 1 -1.0498 -0.0004 0.0004 24 1 3.0090 0.7907 0.6576 25 1 3.0092 0.1755 -1.0128 26 1 4.9342 -2.5709 -3.2736 27 1 4.6578 -6.2132 2.6747 28 1 4.0177 -2.6135 5.6079 29 1 3.6535 -1.2988 4.4648 30 1 1.8256 -0.5494 5.9078 31 1 0.5630 -1.7264 6.3432 32 1 2.1900 -1.8637 7.0516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285073598.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:11 Heat of formation + Delta-G solvation = 18.794052 kcal Electronic energy + Delta-G solvation = -19725.302976 eV Core-core repulsion = 16586.848898 eV Total energy + Delta-G solvation = -3138.454078 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23511 -40.13429 -38.43542 -37.09165 -34.63798 -33.59164 -32.12005 -29.70173 -28.15380 -27.24033 -26.36633 -25.32118 -22.39561 -20.81495 -19.67923 -19.42333 -18.33817 -17.73081 -17.44041 -17.10673 -16.59312 -16.34242 -16.02461 -15.83585 -15.38655 -15.11061 -14.77525 -14.43774 -14.28544 -13.76039 -13.72045 -13.24917 -12.97755 -12.81783 -12.37504 -12.05880 -11.99050 -11.51504 -11.39085 -11.05995 -10.85424 -10.51527 -10.32563 -10.23509 -9.91141 -9.57123 -8.63375 -6.44148 -0.56630 0.59579 1.03897 1.27470 1.35800 1.42389 1.50852 1.65736 1.93184 2.15577 2.18925 2.71490 2.86137 3.04469 3.51610 3.60008 4.02619 4.11147 4.23455 4.42958 4.46855 4.50848 4.55596 4.58785 4.76469 4.80349 5.06115 5.20864 5.32544 5.91217 6.01873 6.20658 6.70279 6.76281 6.80213 7.15151 7.55245 8.44103 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.008379 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.333113 B = 3340.987499 C = 4349.853343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.230 4.230 3 C 0.214 3.786 4 N -0.463 5.463 5 C -0.366 4.366 6 H 0.096 0.904 7 C 0.065 3.935 8 N -0.856 5.856 9 Si 0.903 3.097 10 H -0.271 1.271 11 H -0.264 1.264 12 H -0.243 1.243 13 C 0.556 3.444 14 O -0.589 6.589 15 C -0.286 4.286 16 S 0.305 5.695 17 C -0.055 4.055 18 N -0.494 5.494 19 C 0.095 3.905 20 C 0.140 3.860 21 O -0.410 6.410 22 C 0.031 3.969 23 H 0.254 0.746 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.290 0.710 27 H 0.229 0.771 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 0.453 5.931 5.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.231 4.231 3 C 0.092 3.908 4 N -0.183 5.183 5 C -0.497 4.497 6 H 0.112 0.888 7 C -0.147 4.147 8 N -0.488 5.488 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.188 1.188 12 H -0.166 1.166 13 C 0.347 3.653 14 O -0.475 6.475 15 C -0.412 4.412 16 S 0.568 5.432 17 C -0.346 4.346 18 N -0.209 5.209 19 C -0.047 4.047 20 C 0.062 3.938 21 O -0.330 6.330 22 C -0.065 4.065 23 H 0.270 0.730 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.245 0.755 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.378 0.115 5.405 5.420 hybrid contribution 0.349 1.058 0.488 1.217 sum -0.030 1.174 5.894 6.009 Atomic orbital electron populations 1.25684 0.96593 0.98327 1.00083 1.24016 0.95680 1.02140 1.01272 1.18747 0.84348 0.87143 1.00550 1.43476 1.57202 1.13557 1.04095 1.18825 1.30287 0.92492 1.08145 0.88764 1.25907 0.96007 0.99359 0.93434 1.69773 1.34712 1.39646 1.04670 0.86482 0.80410 0.81332 0.79292 1.19615 1.18814 1.16620 1.17403 0.78922 0.86150 0.82852 1.90604 1.56156 1.45278 1.55422 1.25781 1.16542 1.01046 0.97809 1.85418 1.54926 0.97793 1.05052 1.30021 1.01815 1.07067 0.95736 1.66096 1.15803 1.05043 1.33957 1.20610 0.99867 0.91629 0.92554 1.20874 0.83049 0.96975 0.92900 1.87850 1.24861 1.66249 1.54002 1.22899 1.01636 0.93716 0.88284 0.72957 0.89013 0.88376 0.89989 0.75497 0.90899 0.90564 0.94050 0.88279 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.59 19.25 74.32 1.43 -5.16 16 2 C -0.23 -9.55 13.63 31.13 0.42 -9.13 16 3 C 0.21 9.24 3.89 84.57 0.33 9.57 16 4 N -0.46 -21.90 1.85 -650.07 -1.21 -23.11 16 5 C -0.37 -17.69 7.29 84.09 0.61 -17.08 16 6 H 0.10 4.80 5.53 -15.84 -0.09 4.71 16 7 C 0.06 3.05 5.21 84.94 0.44 3.49 16 8 N -0.86 -41.75 13.96 21.67 0.30 -41.44 16 9 Si 0.90 36.74 26.62 68.60 1.83 38.57 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 12 H -0.24 -9.56 5.32 99.48 0.53 -9.03 16 13 C 0.56 26.92 7.54 86.41 0.65 27.58 16 14 O -0.59 -29.56 13.95 -4.45 -0.06 -29.62 16 15 C -0.29 -12.82 6.35 24.10 0.15 -12.67 16 16 S 0.31 11.72 18.57 -56.49 -1.05 10.67 16 17 C -0.05 -1.80 12.21 130.60 1.59 -0.20 16 18 N -0.49 -19.12 10.49 -189.64 -1.99 -21.10 16 19 C 0.09 4.00 6.46 42.35 0.27 4.28 16 20 C 0.14 5.44 5.83 71.24 0.42 5.85 16 21 O -0.41 -15.98 10.69 -148.98 -1.59 -17.57 16 22 C 0.03 0.85 11.01 113.37 1.25 2.10 16 23 H 0.25 6.07 7.80 -4.43 -0.03 6.04 16 24 H 0.09 3.87 7.40 -2.38 -0.02 3.85 16 25 H 0.10 4.04 5.27 -2.38 -0.01 4.03 16 26 H 0.29 13.02 8.31 -92.70 -0.77 12.25 16 27 H 0.23 5.26 8.06 -2.91 -0.02 5.23 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.08 3.13 5.96 -2.39 -0.01 3.12 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -62.24 295.22 4.71 -57.53 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.91 Total: 17.46 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 7.58 Total: 8.62 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.89 Total: -85.66 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.65 Total: -47.19 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 1.83 Total: 38.57 kcal Atomic # 16 Polarization: 11.72 SS G_CDS: -1.05 Total: 10.67 kcal Total: -62.24 4.71 -57.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285073598.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.325 kcal (2) G-P(sol) polarization free energy of solvation -62.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds