Wall clock time and date at job start Tue Mar 31 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47294 * 51.28971 * 3 2 1 5 5 C 1.36888 * 119.99905 * 262.35794 * 4 3 2 6 6 H 1.07999 * 120.00328 * 200.27581 * 5 4 3 7 7 C 1.39013 * 120.00057 * 20.28723 * 5 4 3 8 8 N 1.31394 * 119.99600 * 17.40774 * 7 5 4 9 9 Si 1.86798 * 119.99804 * 197.41061 * 7 5 4 10 10 H 1.48491 * 109.47358 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46691 * 119.99840 * 9 7 5 12 12 H 1.48505 * 109.47037 * 239.99408 * 9 7 5 13 13 C 1.34776 * 119.99905 * 82.36563 * 4 3 2 14 14 O 1.21727 * 120.00071 * 181.97993 * 13 4 3 15 15 C 1.46564 * 120.00019 * 1.97836 * 13 4 3 16 16 C 1.36786 * 126.17832 * 172.64511 * 15 13 4 17 17 N 1.30943 * 113.91957 * 179.97438 * 16 15 13 18 18 C 1.29374 * 117.46833 * 359.97438 * 17 16 15 19 19 C 1.50703 * 124.70182 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.46839 * 90.02765 * 19 18 17 21 21 C 1.42897 * 114.00138 * 179.97438 * 20 19 18 22 22 S 1.70927 * 110.59788 * 0.02562 * 18 17 16 23 23 H 4.40640 * 5.51336 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47398 * 291.28930 * 3 2 1 25 25 H 1.09000 * 109.47076 * 171.28860 * 3 2 1 26 26 H 0.97004 * 119.99961 * 180.02562 * 8 7 5 27 27 H 1.08001 * 123.03664 * 0.26578 * 16 15 13 28 28 H 1.08999 * 109.47097 * 210.02594 * 19 18 17 29 29 H 1.08997 * 109.46981 * 330.02522 * 19 18 17 30 30 H 1.08990 * 109.47516 * 179.97438 * 21 20 19 31 31 H 1.09004 * 109.46799 * 300.00194 * 21 20 19 32 32 H 1.09010 * 109.46966 * 59.99809 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8629 -1.0778 5 6 3.5121 -2.1503 -0.8055 6 1 4.1622 -2.6782 -1.4875 7 6 3.0585 -2.7782 0.3488 8 7 2.0222 -2.2945 0.9958 9 14 3.9222 -4.3096 0.9799 10 1 5.0519 -4.6481 0.0777 11 1 4.4397 -4.0572 2.3488 12 1 2.9610 -5.4410 1.0150 13 6 3.2130 -0.3898 -2.3374 14 8 3.5848 -1.1181 -3.2391 15 6 2.8503 1.0015 -2.6214 16 6 3.0140 1.6513 -3.8139 17 7 2.6054 2.8953 -3.8012 18 6 2.1094 3.3492 -2.6958 19 6 1.5921 4.7510 -2.4994 20 8 0.2011 4.7951 -2.8236 21 6 -0.3909 6.0866 -2.6698 22 16 2.1235 2.1391 -1.4887 23 1 -1.0498 0.0000 -0.0003 24 1 3.0095 -0.3723 0.9575 25 1 3.0089 1.0166 -0.1556 26 1 1.7058 -2.7324 1.8014 27 1 3.4375 1.1795 -4.6882 28 1 1.7325 5.0477 -1.4600 29 1 2.1386 5.4343 -3.1493 30 1 -1.4467 6.0363 -2.9356 31 1 -0.2916 6.4106 -1.6337 32 1 0.1144 6.7981 -3.3230 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285868474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:14 Heat of formation + Delta-G solvation = 47.186283 kcal Electronic energy + Delta-G solvation = -19236.648508 eV Core-core repulsion = 16099.425610 eV Total energy + Delta-G solvation = -3137.222898 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.38689 -38.58188 -37.62410 -35.32459 -32.52449 -31.44195 -30.94017 -28.24609 -26.77803 -26.22173 -24.91692 -23.41319 -21.17505 -18.52832 -18.11548 -18.03987 -16.87025 -16.56761 -16.11306 -15.56367 -15.38435 -14.80270 -14.48773 -14.33750 -13.91920 -13.50471 -13.11922 -12.70450 -12.53931 -12.49864 -12.07255 -11.78749 -11.51113 -11.18801 -10.96484 -10.70548 -10.48117 -9.86677 -9.73902 -9.55292 -9.30924 -9.07804 -8.77107 -8.58100 -8.35742 -8.01596 -6.58823 -4.07153 0.72929 1.74548 2.17077 2.90796 3.08456 3.14221 3.20689 3.56008 3.80426 3.89542 4.01844 4.12541 4.54157 4.74600 4.88105 4.96535 5.17802 5.22098 5.23030 5.37478 5.51542 5.56830 5.65069 5.90350 6.02104 6.48932 6.63622 6.84148 6.98513 7.31327 7.78095 8.13608 8.18637 8.64237 8.87492 9.04277 9.64528 10.40663 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.005282 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.268445 B = 5299.919243 C = 5972.546926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.128 4.128 3 C 0.221 3.779 4 N -0.419 5.419 5 C -0.301 4.301 6 H 0.112 0.888 7 C 0.031 3.969 8 N -0.851 5.851 9 Si 0.931 3.069 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.507 3.493 14 O -0.571 6.571 15 C -0.240 4.240 16 C 0.069 3.931 17 N -0.460 5.460 18 C -0.036 4.036 19 C 0.147 3.853 20 O -0.382 6.382 21 C 0.032 3.968 22 S 0.222 5.778 23 H 0.204 0.796 24 H 0.127 0.873 25 H 0.066 0.934 26 H 0.274 0.726 27 H 0.181 0.819 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 12.895 1.862 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.131 4.131 3 C 0.096 3.904 4 N -0.135 5.135 5 C -0.429 4.429 6 H 0.130 0.870 7 C -0.175 4.175 8 N -0.487 5.487 9 Si 0.757 3.243 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.296 3.704 14 O -0.456 6.456 15 C -0.365 4.365 16 C -0.088 4.088 17 N -0.175 5.175 18 C -0.309 4.309 19 C 0.068 3.932 20 O -0.301 6.301 21 C -0.065 4.065 22 S 0.481 5.519 23 H 0.221 0.779 24 H 0.145 0.855 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.198 0.802 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.557 12.732 2.146 13.162 hybrid contribution 0.345 -0.892 -0.255 0.990 sum -2.212 11.840 1.890 12.192 Atomic orbital electron populations 1.24300 0.95326 1.03699 1.01577 1.22665 0.94004 0.97210 0.99185 1.18550 0.85282 0.91370 0.95159 1.43672 1.53510 1.11961 1.04375 1.19887 1.27076 0.88617 1.07364 0.87029 1.25492 0.95083 0.99687 0.97279 1.70032 1.19859 1.40757 1.18099 0.85771 0.79517 0.80283 0.78721 1.18847 1.20264 1.20482 1.16587 0.86001 0.84570 0.83274 1.90679 1.53274 1.57725 1.43922 1.26589 1.10704 1.00641 0.98554 1.22155 1.00873 0.88022 0.97798 1.66006 1.11748 1.13893 1.25872 1.27150 1.05565 1.02356 0.95836 1.20672 0.82585 0.90122 0.99839 1.88000 1.22284 1.30553 1.89217 1.22762 0.98888 0.84787 1.00040 1.84635 1.53442 1.00906 1.12954 0.77934 0.85547 0.91779 0.91494 0.80162 0.91420 0.90931 0.89436 0.93894 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.59 19.25 29.55 0.57 -4.02 16 2 C -0.13 -2.76 9.05 -37.12 -0.34 -3.09 16 3 C 0.22 4.79 4.73 -6.83 -0.03 4.76 16 4 N -0.42 -10.50 2.60 -119.46 -0.31 -10.81 16 5 C -0.30 -7.94 9.29 -15.01 -0.14 -8.08 16 6 H 0.11 3.07 7.41 -52.49 -0.39 2.68 16 7 C 0.03 0.76 4.94 -17.45 -0.09 0.67 16 8 N -0.85 -20.98 9.42 55.50 0.52 -20.45 16 9 Si 0.93 19.25 29.59 -169.99 -5.03 14.22 16 10 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.51 12.83 7.51 -12.90 -0.10 12.73 16 14 O -0.57 -16.10 16.56 5.16 0.09 -16.01 16 15 C -0.24 -5.16 6.26 -36.75 -0.23 -5.39 16 16 C 0.07 1.40 11.17 -18.46 -0.21 1.19 16 17 N -0.46 -8.76 10.50 -11.25 -0.12 -8.88 16 18 C -0.04 -0.62 7.00 -13.31 -0.09 -0.72 16 19 C 0.15 1.95 6.51 36.01 0.23 2.18 16 20 O -0.38 -5.39 10.69 -35.23 -0.38 -5.77 16 21 C 0.03 0.29 11.01 101.05 1.11 1.41 16 22 S 0.22 3.94 16.44 -107.50 -1.77 2.17 16 23 H 0.20 3.28 7.80 -54.10 -0.42 2.86 16 24 H 0.13 2.80 6.39 -51.93 -0.33 2.46 16 25 H 0.07 1.23 4.50 -22.81 -0.10 1.13 16 26 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 27 H 0.18 3.45 8.06 -52.49 -0.42 3.03 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 LS Contribution 297.04 15.07 4.48 4.48 Total: -1.00 -31.33 297.04 -4.74 -36.06 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.92 Total: 3.35 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 0.70 Total: 1.66 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.09 Total: -40.15 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.29 Total: -21.78 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.77 Total: 2.17 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.33 -4.74 -36.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285868474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.251 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds