Wall clock time and date at job start Tue Mar 31 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48502 * 109.47211 * 239.99863 * 3 2 1 5 5 H 1.48504 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47393 * 119.99839 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46913 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47277 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47267 * 180.02562 * 11 10 9 13 13 C 1.38435 * 119.99953 * 180.02562 * 12 11 10 14 14 N 1.30227 * 125.58953 * 359.69728 * 13 12 11 15 15 N 1.26260 * 117.65067 * 179.75584 * 14 13 12 16 16 C 1.30384 * 116.38007 * 0.54334 * 15 14 13 17 17 C 1.47841 * 126.14324 * 179.69447 * 16 15 14 18 18 C 1.42474 * 126.96344 * 0.02562 * 17 16 15 19 19 C 1.35158 * 103.93205 * 179.97438 * 18 17 16 20 20 O 1.34093 * 106.73852 * 359.97438 * 19 18 17 21 21 N 1.20902 * 111.89509 * 359.75051 * 20 19 18 22 22 S 1.71280 * 125.58587 * 179.97438 * 13 12 11 23 23 H 0.97005 * 120.00528 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46872 * 60.00566 * 9 7 2 25 25 H 1.08992 * 109.47574 * 299.99976 * 9 7 2 26 26 H 1.09004 * 109.46840 * 59.99974 * 10 9 7 27 27 H 1.09005 * 109.47310 * 300.00364 * 10 9 7 28 28 H 1.09004 * 109.47330 * 60.00123 * 11 10 9 29 29 H 1.09005 * 109.47124 * 300.00327 * 11 10 9 30 30 H 0.96999 * 119.99984 * 359.97438 * 12 11 10 31 31 H 1.07996 * 128.03307 * 0.02562 * 18 17 16 32 32 H 1.08001 * 126.62897 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 -0.0001 12 7 2.4325 -6.1005 0.0005 13 6 1.9711 -7.4057 -0.0005 14 7 0.7200 -7.7672 0.0037 15 7 0.4676 -9.0043 -0.0027 16 6 1.4963 -9.8055 -0.0019 17 6 1.4506 -11.2832 -0.0021 18 6 0.2863 -12.1043 -0.0037 19 6 0.7764 -13.3639 -0.0038 20 8 2.1132 -13.2582 -0.0028 21 7 2.4742 -12.1043 -0.0071 22 16 2.9521 -8.8097 -0.0005 23 1 -0.4851 0.8400 -0.0004 24 1 0.6249 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6042 0.8906 27 1 2.8721 -3.6043 -0.8894 28 1 0.8541 -5.0446 -0.8904 29 1 0.8535 -5.0450 0.8897 30 1 3.3862 -5.9232 0.0008 31 1 -0.7477 -11.7927 -0.0055 32 1 0.2024 -14.2787 -0.0044 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287851542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:21 Heat of formation + Delta-G solvation = 119.161406 kcal Electronic energy + Delta-G solvation = -17690.645712 eV Core-core repulsion = 14588.836641 eV Total energy + Delta-G solvation = -3101.809072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.26486 -41.03307 -37.02100 -34.79669 -33.75103 -32.14601 -31.72274 -29.92418 -27.36120 -25.83111 -23.96021 -23.24292 -22.42211 -20.78399 -20.13774 -19.16989 -18.24530 -17.94391 -16.82485 -16.46436 -15.96541 -15.86852 -14.73511 -14.68497 -14.46077 -13.95049 -13.54156 -13.33748 -12.59947 -12.38049 -11.98274 -11.91905 -11.51798 -10.96521 -10.87655 -10.71501 -10.63276 -10.52737 -10.21367 -10.09295 -9.90988 -9.57332 -9.53056 -9.22425 -8.43025 -8.06399 -6.07546 -4.11322 0.20565 0.49650 1.14832 1.20790 1.91593 2.82406 2.82578 2.99041 3.28401 3.33543 3.35137 3.42445 4.25710 4.39140 4.68149 4.76024 4.86084 5.17020 5.28257 5.31423 5.44495 5.58661 5.60317 5.97405 6.32616 6.42754 6.76407 6.81809 7.12936 7.54862 7.66011 7.80750 7.89845 8.30075 8.60963 8.94714 9.53267 11.03571 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.072011 B = 0.002458 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.734532 B =11386.364577 C =11749.348506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.122 4.122 11 C 0.122 3.878 12 N -0.664 5.664 13 C 0.283 3.717 14 N -0.341 5.341 15 N -0.175 5.175 16 C 0.011 3.989 17 C 0.101 3.899 18 C -0.195 4.195 19 C -0.057 4.057 20 O 0.112 5.888 21 N -0.351 5.351 22 S 0.116 5.884 23 H 0.263 0.737 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.418 0.582 31 H 0.181 0.819 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 -25.675 -0.005 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.002 4.002 12 N -0.301 5.301 13 C -0.089 4.089 14 N -0.193 5.193 15 N -0.016 5.016 16 C -0.270 4.270 17 C -0.059 4.059 18 C -0.219 4.219 19 C -0.138 4.138 20 O 0.041 5.959 21 N -0.054 5.054 22 S 0.356 5.644 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.255 0.745 31 H 0.199 0.801 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.611 -25.034 -0.008 25.455 hybrid contribution -0.181 1.204 -0.002 1.217 sum 4.430 -23.830 -0.009 24.239 Atomic orbital electron populations 1.69947 1.06061 1.26933 1.50197 1.25025 0.94874 0.99341 0.95153 0.86627 0.79564 0.83009 0.78617 1.20221 1.21214 1.20215 1.21131 0.92955 0.90858 1.51432 0.92667 1.19016 0.93732 0.90596 0.97837 1.21942 1.00001 0.92892 1.01196 1.21969 0.91444 0.83924 1.02820 1.44496 1.10371 0.99641 1.75554 1.26089 0.92888 0.93239 0.96701 1.71505 1.13378 1.06634 1.27778 1.71517 1.25912 0.95515 1.08649 1.25500 0.90317 0.94903 1.16302 1.20357 0.90239 0.90495 1.04808 1.22802 1.01020 0.91050 1.07000 1.25970 0.83387 1.00966 1.03517 1.84817 1.22901 1.21591 1.66542 1.74293 1.22570 0.89533 1.19007 1.84817 1.09457 0.97055 1.73108 0.92774 0.96120 0.96107 0.92445 0.92453 0.90937 0.90935 0.74462 0.80132 0.76030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.12 1.99 5.98 -4.05 -0.02 1.96 16 12 N -0.66 -9.05 5.71 -62.14 -0.35 -9.41 16 13 C 0.28 4.11 8.21 -87.41 -0.72 3.39 16 14 N -0.34 -5.72 11.20 29.89 0.33 -5.39 16 15 N -0.17 -2.76 11.70 33.01 0.39 -2.37 16 16 C 0.01 0.16 7.64 -14.24 -0.11 0.05 16 17 C 0.10 1.20 7.27 -82.57 -0.60 0.60 16 18 C -0.19 -1.66 11.15 -39.05 -0.44 -2.09 16 19 C -0.06 -0.33 12.27 29.64 0.36 0.04 16 20 O 0.11 0.98 11.18 17.04 0.19 1.17 16 21 N -0.35 -4.06 12.13 33.28 0.40 -3.65 16 22 S 0.12 1.44 23.30 -107.50 -2.50 -1.07 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.42 4.59 8.60 -40.82 -0.35 4.24 16 31 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.22 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -32.45 306.28 -6.70 -39.15 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -3.27 Total: -2.52 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.21 Total: -11.07 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 1.51 Total: -46.46 kcal Atomic # 8 Polarization: 0.98 SS G_CDS: 0.19 Total: 1.17 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.50 Total: -1.07 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.45 -6.70 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287851542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.311 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds